LOC110532689 (LOC102781726)


Basic Information

Item Value
gene id LOC110532689
gene name LOC102781726
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 65611213 ~ 65619959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616782.2
CCCGAATCCAGCTGGTACGGCTAAAAGAGAAATGAAACAACTATGTGTTGGTAGTGATTCTAGTGAATTAACGTCGTCCATTCAGGCCACCTAAGCATTGCGTCGTGTCGTGACTGGAGAAGCTCTGTAGCAGTGAGTTGAGGTctgaccagccagccagtcaccagccagtcaaccagccagccaaccaccaGCCAGTCAGTTACCATGGGGAACATCTTTGGCAACCTGCTGAAGAGCCTGTTAGGGAAGAAAGAGATGAGGATCCTGATGGTGGGGCTGGACGCTGCAGGGAAGACCACCATCCTATACAAACTGAAGCTGGGAGAGATTGTCACCACCATCCCCACTATCGGGTTTAACGTGGAGACGGTTGAGTATAAGAACATCAGTTTCACAGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCGCTGTGGAGACACTACTTCCAGAACACACAGGGTCTGATCTTCGTGGTGGACAGTAATGATCGTGAGCGGGTGAATGAGGCTCGAGAGGAGCTGATGAGGATGCTGGCTGAGGATGAGCTACGAGACGCCGTGCTTCTTATCTTCGCTAACAAACAGGACCTGCCCAATGCCATGAACGCAGCAGAGATCACAGACAAGCTGGGTCTCCACTCCCTACGTCACCGTAACTGGTACATCCAGGCCACCTGCGCCACCAGCGGAGACGGCCTGTACGAGGGCCTCGACTGGCTGGCCAATCAGCTGAAGAACAAGAAGTGAGTGGACCAAtcagaggagagtgaggagaaacCTTAGTGTCAGCTCTTGAATCAAAAAGTGGTAGTTGGTTTTATTTGATCCATTAAGTGAAAAATCCTGACATGGTGGGAGTGAAATGTGATTGGTGTGTAGGAAGGGGACTTAGAGAGAATATCCCTATTGCTTGAGGATCCATATCCCCATTCCTTGAGGACATTTTCAGCCTGTTGTCAACTATTACAAATGGTTAGCGCTGTCCAGCTGCGGGCCATCAATGTCAATACATTAACCTTAATAATAACATTGAAAAAGTATTTAGCAacaccatttatttatttattatttatttcagaatGGACAATGGCAATGTTAGTTTGGTTTGGAACACAGTATTATGCATGGCCATACAGTAAACGATCTCTTGGAAATGAAA
>XM_021616783.2
GCGAGACCTCTGCCATTCTTGGCGTCTTCTCGCGAGAGTCAAACGCCACTGCCCGAATCCAGCTGGTACGGCTAAAAGAGCTCTGTAGCAGTGAGTTGAGGTctgaccagccagccagtcaccagccagtcaaccagccagccaaccaccaGCCAGTCAGTTACCATGGGGAACATCTTTGGCAACCTGCTGAAGAGCCTGTTAGGGAAGAAAGAGATGAGGATCCTGATGGTGGGGCTGGACGCTGCAGGGAAGACCACCATCCTATACAAACTGAAGCTGGGAGAGATTGTCACCACCATCCCCACTATCGGGTTTAACGTGGAGACGGTTGAGTATAAGAACATCAGTTTCACAGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCGCTGTGGAGACACTACTTCCAGAACACACAGGGTCTGATCTTCGTGGTGGACAGTAATGATCGTGAGCGGGTGAATGAGGCTCGAGAGGAGCTGATGAGGATGCTGGCTGAGGATGAGCTACGAGACGCCGTGCTTCTTATCTTCGCTAACAAACAGGACCTGCCCAATGCCATGAACGCAGCAGAGATCACAGACAAGCTGGGTCTCCACTCCCTACGTCACCGTAACTGGTACATCCAGGCCACCTGCGCCACCAGCGGAGACGGCCTGTACGAGGGCCTCGACTGGCTGGCCAATCAGCTGAAGAACAAGAAGTGAGTGGACCAAtcagaggagagtgaggagaaacCTTAGTGTCAGCTCTTGAATCAAAAAGTGGTAGTTGGTTTTATTTGATCCATTAAGTGAAAAATCCTGACATGGTGGGAGTGAAATGTGATTGGTGTGTAGGAAGGGGACTTAGAGAGAATATCCCTATTGCTTGAGGATCCATATCCCCATTCCTTGAGGACATTTTCAGCCTGTTGTCAACTATTACAAATGGTTAGCGCTGTCCAGCTGCGGGCCATCAATGTCAATACATTAACCTTAATAATAACATTGAAAAAGTATTTAGCAacaccatttatttatttattatttatttcagaatGGACAATGGCAATGTTAGTTTGGTTTGGAACACAGTATTATGCATGGCCATACAGTAAACGATCTCTTGGAAATGAAA

Function

NR:

description
ADP-ribosylation factor 3

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616782.2 False 1165 mRNA 0.48 6 65611213 65619908
XM_021616783.2 True 1123 mRNA 0.49 5 65611213 65619959

Neighbor

gene id symbol gene type direction distance location
LOC110532688 LOC106572678 coding downstream 5870 65559624 ~ 65605343 (-)
LOC110532687 LOC106572679 coding downstream 51533 65551960 ~ 65559680 (-)
LOC118966093 NA coding downstream 62397 65546704 ~ 65548816 (-)
LOC110531238 LOC106572666 coding downstream 72468 65499480 ~ 65538745 (-)
LOC110532685 NA coding downstream 112349 65406913 ~ 65498864 (-)
LOC110532706 LOC106572675 coding upstream 10105 65630064 ~ 65635839 (-)
LOC110532704 LOC106592425 coding upstream 53826 65673785 ~ 65682112 (-)
LOC110532699 acv1b coding upstream 182818 65802777 ~ 65827900 (-)
LOC110532700 LOC106567044 coding upstream 209243 65829202 ~ 65875211 (-)
LOC110532698 LOC106572673 coding upstream 263646 65883605 ~ 65893796 (-)
G832095 NA non-coding downstream 4497 65606111 ~ 65606716 (-)
G832096 NA non-coding downstream 5328 65605633 ~ 65605885 (-)
G832090 NA non-coding downstream 14402 65596367 ~ 65596811 (-)
G832086 NA non-coding downstream 27601 65583374 ~ 65583612 (-)
G832085 NA non-coding downstream 31663 65579235 ~ 65579550 (-)
G832111 NA non-coding upstream 14264 65634223 ~ 65634498 (-)
G832125 LOC106572674 non-coding upstream 24949 65644908 ~ 65645151 (-)
G832126 NA non-coding upstream 25697 65645656 ~ 65645928 (-)
G832130 NA non-coding upstream 28590 65648549 ~ 65648783 (-)
G832138 NA non-coding upstream 34714 65654673 ~ 65654878 (-)
G832008 NA other downstream 193117 65414495 ~ 65418096 (-)
G831986 NA other downstream 198142 65370853 ~ 65413071 (-)
LOC110532670 hoxc8ab other downstream 897543 64710256 ~ 64713744 (-)
G830543 LOC108255233 other downstream 1570002 64027907 ~ 64041211 (-)
LOC110532632 LOC106572615 other downstream 1711909 63862848 ~ 63899379 (-)
G832392 LOC106572669 other upstream 156624 65776583 ~ 65781798 (-)
G832401 kmt2d other upstream 173898 65793857 ~ 65795190 (-)
G832461 NA other upstream 326223 65946182 ~ 65946593 (-)
G832480 LOC106572660 other upstream 381260 66001219 ~ 66001734 (-)
G832503 NA other upstream 415913 66035872 ~ 66036180 (-)

Expression


Co-expression Network