LOC110531239 (LOC106572674)


Basic Information

Item Value
gene id LOC110531239
gene name LOC106572674
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 65640625 ~ 65646547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988718.1
CCAGGCTGTGCGCACTCACAGCCACAGCAcatctccacacacagacacacacatctcagTGTTTTGACTTAATTCAGGAAGACTGGATGTGGAAGACAGAGCATGATCCTGTGGGAAAATACTACAAGCATTAATAGCCATCATTTCTAAAGAATCGTTGGATTGTTTGATTACCGTGAGATTCCGTTAGTAATGTGTGTAATTTACACTGGTGGATTGCCTTGGCTATTTTTTATTTTCCTTTCTCCTCCTTTCTGTCcgtttttgttttctttattcaTTGTGCCCTATGAAGGCAATTAACTATCCCTCCTACCAATCCTATTGAAAAGAGGGCAGAAAAAAAGGGACATAAGAGCAGCAAATCCCTTTTGATTCCTCTTGTAGCGCTCAATAATTAAAGAATGTGTTGCCTATCACTCATGGAGGGGATCAAGTCTTCCGGACTGTCCCACGCGCTCAATGTGCTGCTGCTGTCCAGAGCATCactacagagatagacagagaacgTGAAGAGAACAGCCGCAGCATCCTGCAGCCGAGCCTGGAAAGACACTTCAGCTGCACTAGACAAGGACTCATTTAGCAACCTGTCTCCTCCGTCTGACTGTCTCCTCACCAGATTCATTATTATAGGAAAGGCTCCTCGTTGCTTTTTCCTCTCTAAAGTCCCGTTCTTTGGAATGTGGTGTGACATAATGAAGATCCTCGCACTGCTTCTGGGGATGAAAGCCGCGTGCATCCTGCTGGTTTCCTCGCTTTCAGGCACGGGGGCAgtcaacaacagcggccggtggTGGGGCATTGTGAACGTGGCCTCCTCTGCAaacctcctcaccaactctaagAATGTCCAGCTGGTACTGGATCCCAGCTTGGGCCAGCTGAACCGTCGCCAGCGTCGCCTCATCCGCCAGAACCCTGGGATCCTCCACGCCATCTCAGCCGGCCTGCACACCGCCATCAAGGAGTGCAAGTGGCAGTTCAGAAACCGCCGCTGGAACTGCCCGACCACCCACAGCCCGGCAATATTTGGCAAAATTGTCAACCGTGGTTGCCGAGAGACAGCGTTTGTGTTTGCGATCACAAGTGCAGGAGTGACCCATGCGGTGGCCCGCTCCTGCTCTGAGGGTGCCATCGAGTCATGCACCTGTGACTACCGTCGCCGGGGGCCTGGGGGCCCTGACTGGCACTGGGGCGGCTGCAGCGACAACGTGGACTTTGGCCGGATGTTCAGTCGGGAGTTTGTGGACTCcagtgagagaggaagggatcTCCGATACCTCATTAACCTACACAACAACGAGGCAGGGAGAATGACAGTGTCATCAGAGATGCGTCAGGAGTGTAAGTGCCATGGCATGTCAGGGTCATGCACCATCCGTACCTGCTGGATGCGTCTACCCAGCTTCCGCGCTGTGGGGGACTTCCTGAAGGACCGCTTCGACGGAGCTTCCCGGGTCGTCTATGCCAACAAGGGTTCCAACCGCGCCTCTCACCGTGCCGATCCAAGCAATCTCGAACCCGAGAACCCCTCCCACAAACCCCCGTCATCCAGAGACCTGGTCTACTTTGAGAAGTCACCCAACTTCTGCACCTACCACGGCAAGACGGGTACCCACGGAACCTCGGGGAGGACCTGTAACAGCTCGTCTCCGGCGCTGGACGGGTGTGAGCTGCTGTGTTGTGGTAGAGGGTTCCAAACTCAGACTGAGAAGGTCACTGAGAGGTGTCACTGTACGTTCCACTGGTGCTGCCATGTTAGCTGCCTCAACTGCACCAGCACACAGACGTTACACCAGTGCCTCTGATCACAGGAGAACCAGGACAGGGGCTCAGAGATGGAAACGGACAGGCTCTTTGGGCAGGTGGTGTGTAGATAGAGGAATGGTGTGGTAGAGAAGGGAAGGACTAACTCCTTAAAGGGTTAATTGGGGGGTTGAAAAGTGAATACAGGGAGTACTAGAGCTTAATCAATGTTTTGTTTTGtgaggaaagaaaagagaaaagcACAACAATGATTACAGGGTGTAGAAGGagggtttgtgtatgtgtgcttgctCCTGATGCTCTGCTGTAACAGAATATGTTAGTGTGCTTACTGGGAATTTCAATGCTGTAGCTATCCAACCATGtagaatggaatggaaaccaATCCTCACTATGGCTTCCCAACACCAGTAACAAGACCAGAGGCAGATTGAGTTAAAGGAAGTAGTTACAAAGGAAATAGATTTGTGGCTAGAGATAAACAACCAAAATTAGTCTGAGAGAGATGCTGGGATTTGTGTCTTTCACCCACTCTGACCTTACAAGATACAACTagtgtctctgtcccctctccatctctcccttccacGACAGAGAGATGTgatggcagaggaggagaggggagggaggagagtaacGGTTGCTGAACACAATGTCAGACAGATGTCTCTGTGGCGGGAGAACCACAAGCATGGGCTCTCATAAACCGGTGAAGAACTGTGACAAGAGGGTGGTTATTTTAAACATCACTGTTTTGTTTTCTTTTGCTGCAGTTCTACTTTTCTCACGTAAAATTGTGTGAAGTACATCTCCCAGGATGTGCTgtcttctcccccaattgctatGTACTTTGGTCCTGGACGTGGACCAAGCCGTTATGATTTCCTCTCTAACTCACCACACATGCCCTCTTTGTTTAGATTGCTCTGGAATCCGCTACACCTCAACCCGGAGTTACCGCGGTGATTTACTGCACCATGGTTACTGACGTTAAAGGACTGGACGCTGTAGCCGCATCCAAGGATAACACAAAAATATTCTACAGTTTTATAACAAACTGGAATTCACTATGGGAATCATATGTATGAATAGTTTGACTGTAGTATCAATACACTGAATATTGGAGAGAATAActagatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttc
>TU946212
CATGGGCTCTCATAAACCGGTGAAGAACTGTGACAAGAGGGTGGTTATTTTAAACATCACTGTTTTGTTTTCTTTTGCTGCAGTTCTACTTTTCTCACGTAAAATTGTGTGAAGTACATCTCCCAGGATGTGCTgtcttctcccccaattgctatGTACTTTGGTCCTGGACGTGGACCAAGCCGTTATGATTTCCTCTCTAACTCACCACACATGCCCTCTTTGTTTAGATTGCTCTGGAATCCGCTACACCTCAACCCGGAGTTACCGCGGTGATTTACTGCACCATGGTTACTGACGTTAAAGGACTGGACGCTGTAGCCGCATCCAAGGATAA

Function

GO:

id name namespace
GO:0035284 brain segmentation biological_process
GO:0021587 cerebellum morphogenesis biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988718.1 False 2976 mRNA 0.50 5 65640625 65646547
TU946212 True 337 lncRNA 0.46 1 65646032 65646368

Neighbor

gene id symbol gene type direction distance location
LOC110531237 LOC106567057 coding upstream 239378 65186569 ~ 65405501 (+)
LOC118966190 NA coding upstream 472195 65166655 ~ 65168430 (+)
LOC110532682 LOC106572650 coding upstream 546480 65077445 ~ 65135899 (+)
LOC110532681 LOC106572651 coding upstream 567219 65064473 ~ 65073406 (+)
LOC110532679 LOC106572652 coding upstream 578751 65052604 ~ 65061874 (+)
LOC110532705 LOC106567051 coding downstream 22806 65669353 ~ 65671483 (+)
LOC118966094 LOC106568803 coding downstream 44769 65691316 ~ 65692849 (+)
LOC110532703 LOC106572667 coding downstream 59881 65706428 ~ 65733828 (+)
LOC110532702 LOC106572671 coding downstream 96621 65743168 ~ 65751861 (+)
LOC110532701 LOC106572669 coding downstream 107950 65754497 ~ 65801814 (+)
G832108 LOC106572675 non-coding upstream 7928 65631407 ~ 65632697 (+)
G832107 NA non-coding upstream 9233 65628895 ~ 65631392 (+)
G831854 NA non-coding upstream 43390 65597012 ~ 65597235 (+)
G831853 NA non-coding upstream 43814 65596272 ~ 65596811 (+)
G831850 NA non-coding upstream 49217 65591149 ~ 65591408 (+)
G832129 NA non-coding downstream 1546 65648093 ~ 65648636 (+)
G832147 NA non-coding downstream 26359 65672906 ~ 65673191 (+)
G832152 NA non-coding downstream 31902 65678449 ~ 65678655 (+)
G832178 NA non-coding downstream 98318 65744865 ~ 65745115 (+)
G832182 NA non-coding downstream 101448 65747995 ~ 65748298 (+)
G831865 NA other upstream 17309 65622938 ~ 65623316 (+)
G831810 NA other upstream 125640 65514393 ~ 65514985 (+)
G831299 LOC100653477 other upstream 757082 64879707 ~ 64883543 (+)
G830923 NA other upstream 974314 64665748 ~ 64666311 (+)
G833100 LOC106613929 other downstream 1112731 66759278 ~ 66759673 (+)
G833139 LOC100380641 other downstream 1167917 66814464 ~ 66821639 (+)
G833241 LOC106572720 other downstream 1285141 66931688 ~ 66934487 (+)

Expression

LOC110531239(LOC106572674) Expression in all Baseline Samples

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LOC110531239(LOC106572674) Expression in each Bioproject

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LOC110531239(LOC106572674) Expression in each Sample
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Co-expression Network