XLOC_026764 (hgs)


Basic Information

Item Value
gene id XLOC_026764
gene name hgs
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50076793 ~ 50118140 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052086
GCGACATGTACGCGCATGCGCGTGTCACCGGCAGTGAAACTCGCTTATTCACACAAGTGaacaacagaaaaacacagaGCGTCCTGATATCAGAGATCAGACATGGGCAAAGGCGGTGGAACATTTGAGCGACTATTGGAGAAAGCCACCAGTCAGCTGCTACTGGAGACTGACTGGGAGTCTATTTTGCAGATCTGTGACCTCATTCGCCAAGGCGATACACAGGCAAAATATGCAATTGGTGCCATCAAGAAAAAACTCAATGACAAAAATCCACATGTGGCACTCTATGCTCTCGAGGTCCTGGAGTCAGTGGTGAAGAACTGTGGCCAGACCATTCATGATGAAGTGGCCAGTAAGCAGACGATGGAGGAGCTGAAAGAGCTGTTCAAGAAACAACCCGAACCTAACGTGAAGAACAAGATCCTTTATCTGATCCAGGCCTGGGCTCACGCCTTCCGAAACGAACCCAAGTACAAAGTTGTTCAGGACACCTATCAAATCATGAAGGTGGAAGGTCACGTCTTCCCAGAATTCAAGGAGAGCGATGCCATGTTTGCAGCAGAGAGGgcCCCTGATTGGGTGGATGCAGAGGAGTGTCACAGATGTAGGGTCCAGTTTGGTGTTATGACCCGAAAGCACCACTGCAGGGCATGTGGGCAGATTTTCTGTGGGAAGTGCTCTTCGAAGTACTCAACCATTCCCAAGTTCGGCATTGAGAAGGAGGTGCGAGTGTGTGAGCCCTGCTTCGAGATTCTCAACAAGAAAGCGGAAGGGAAGGCGCCCAGCACTGGGCCATCGGAACTTCCCCCTGAGTACCTGACCAGCCCTCTGTCCCAGCAGTCTCAGATGCCTCCTAAAAGAGACGAGGCGGCGCTGCAAGAGGAAGAGGAGCTTCAACTGGCCATTGCTCTGTCCCAGAGTGAGGCCGAGGAGAAGGAGAGGATGAGACAGAAGAACCCTTATTCTGCTTATCCCAAAGCAGATCCCACTCCTGTGACCTCCTCTGCTCCTCCTGTCAGCACTCTCTACTCCTCACCCGTGAATTCATCAGCTCCATCGGCTGAAGAAGTGGATCCAGAGCTGGCCCGTTACCTGAACAGAACTtactgggaaaaaaaacaagaagagGTTCGCAAGAGCCCCACCCCCTCTGCTCCTGCTCCTGTTTCATTGGCTGAGCCTGTACCGGTCAGCCAACCAGTGGAAAGCCACGTTCCAGTCCAGCCAATTAACATTGTTGAGCAGTATCAGAACGGAGAGTCTGAGGAGAACCATGAACAGTTCCTGAAAGCCTTGCAAAACTCAGTCACCACCTTCCTGAACCGCATGAAGAGCAACCACATGCGAGGCCGCAGCATCACCAATGACAGCGCAGTTCTCTCTCTCTTCCAGTCCATCAACAACATGCACCCACAACTGTTGGAGATACTCAACCAGCTGGATGAAAAGAGACTGTACTATGAAGGATTGCAGGATAAACTGGCACAGGTGCGTGACGCTCGAGCCGCACTGAACGCTCTGAGAGAGGAGCACAGGGAGAAACTGAGACGAGCAGCTGAGGAGGCAGAGAGACAGCGACAGATCCAGCTGGCACAAAAACTCGAGATCATGAGGCAGAAGAAACAGGAATACCTGGAGATGCAGAGGCAGCTGGCCATCCAGCGCCTTCAGGAGCAGGAGAAGGAGAGACAGATGCGGCTGGAACAACAAAAACACACCATTCAGATGAGAGCACAGATGCCGGCCTTCTCTCTGCCTTACGCACAGATGCAGTCACTGCCTCCTAATGTGGCAGGGGGAGTGGTGTACCCCCCTGCTGGCCCTCCAAGTTATCCAGGCACATTCAGTCCTTCGGGTTCGGTTGAAGGGTCGCCCATGCATGGAGTCTACATGAACCAGGCCGGTCAGACTGCTGCCGGTGGCCCGTATCAGGCCATGCCACCAGATCCCAACATGGTGAATGCTTACATGTATCAGACTGCGGGCAATAGTGGGCAGCCGGCAGCCCCAGGACAAGCCCCACCAACAACCACTCCTGCTTACACTAATTACCAGCCCACACCCACACAGGGCTACCAGAACGTGGTGTCTCAGGCTCAGAGTTTGCCACCAATGTCACAGGCTGCCCCGACCAATGGTATAGcttacatgggctaccagcagtacAACATGCAGAATATGATGAGCGCTCTTCCCGGACAAGACCCCAACATGCCTCCCCAACAGCCCTACATGCCTGGGCAACAGCCCATGTACCAGCAGATGGCTCCTCCTGGTGGTCCTCAGCAGCAgtcacagcagcagcagcagccgcCTCCTCCTCCTCAAGCACCTCCGGGCAGTGCAGAGGCTCAGCTCATTTCATTTGACTGATCGCTCCTCATATGCCTTTACACAGCAGGTCCAGCACACTACATTCAGCTCTCTCTAACACTGATGCTTCACACTGCTCCACAAATACTGAAActgtacaaaaattaaaaaaaagcatttggcTGTTTACCTTCCCTTCACTGTGTCTGTAAATGAAGGAGGAGATGATACTGATGGAGCTGGGGAAGGGAACCTTTGAAACCTGGATGAAACTCAATGTCTGGATCATATTTGACCCTcaaaacgaaaagaaaatgaagcctATTTTGGACctctttatgttttttgtttatatttcataTGGGGATCATATTACGGatgataaaaaatatttcagCTGTAATGTAGTTAGAACAATGGTAATATGCTTATAATGGTATAATAATGTTCAGGCTTTATTCTTTGTCATTTTAGTAGTAAATGTAACGTTAATGAGATTCACTTTTGACAATTATTGGTCATATAAGTTTgacaatatataatatacttttgacattacattttaaaaatggggaaatgttattgttgt
>TCONS_00052087
GACAGACCGACACGTCGCTTACGATTAGATGACAGATCTGCTAATGCTAACGCTAGCACAACGAGAAAGCCACCAGTCAGCTGCTACTGGAGACTGACTGGGAGTCTATTTTGCAGATCTGTGACCTCATTCGCCAAGGCGATACACAGGCAAAATATGCAATTGGTGCCATCAAGAAAAAACTCAATGACAAAAATCCACATGTGGCACTCTATGCTCTCGAGGTCCTGGAGTCAGTGGTGA

Function

symbol description
hgs Predicted to enable kinase activity and metal ion binding activity. Predicted to act upstream of or within intracellular protein transport and phosphorylation. Predicted to be located in early endosome membrane. Orthologous to human HGS (hepatocyte growth factor-regulated tyrosine kinase substrate).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04145 Phagosome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-6107 Predicted to enable kinase activity and metal ion binding activity. Predicted to act upstream of or within intracellular protein transport and phosphorylation. Predicted to be located in early endosome membrane. Orthologous to human HGS (hepatocyte growth factor-regulated tyrosine kinase substrate).

Ensembl:

ensembl_id ENSDARG00000020960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052086 False 2905 mRNA 0.50 21 50076793 50118140
TCONS_00052087 True 243 processed_transcript 0.48 4 50104071 50117962

Neighbor

gene id symbol gene type direction distance location
XLOC_026763 mrpl12 coding downstream 10265 50054187 ~ 50066528 (-)
XLOC_026762 si:ch1073-100f3.2 coding downstream 30789 50032394 ~ 50046004 (-)
XLOC_026761 NA coding downstream 139058 49934636 ~ 49937735 (-)
XLOC_026760 gcgra coding downstream 151480 49757578 ~ 49925313 (-)
XLOC_026759 zgc:153426 coding downstream 510429 49559261 ~ 49566364 (-)
XLOC_026765 cldnk coding upstream 5367 50123507 ~ 50127668 (-)
XLOC_026766 btr02 coding upstream 9586 50127726 ~ 50147160 (-)
XLOC_026767 rasd2 coding upstream 57026 50175166 ~ 50177658 (-)
XLOC_026768 arl16 coding upstream 153822 50271962 ~ 50277959 (-)
XLOC_026769 NA coding upstream 220640 50338780 ~ 50341046 (-)
XLOC_026754 NA non-coding downstream 658448 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 704117 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 998914 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 1040011 49023900 ~ 49036782 (-)
XLOC_026770 NA non-coding upstream 315411 50433551 ~ 50438278 (-)
XLOC_026771 NA non-coding upstream 315653 50433793 ~ 50434423 (-)
XLOC_026773 CR812464.1 non-coding upstream 610719 50728859 ~ 50749116 (-)
XLOC_026777 NA non-coding upstream 1141691 51259831 ~ 51273723 (-)

Expression


Co-expression Network