LOC110532695 (LOC106572686)


Basic Information

Item Value
gene id LOC110532695
gene name LOC106572686
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66044660 ~ 66047730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616789.2
CTAATTTATTATCAATGTAACCCCCTCCCCAAATAATAATcctcacatccccctctctctcttcgttCACTGGTTCTCGTGGAGACCCCGTTGAGAGGACCCTCTCGCCCTATAAAGACGAGATGCAGCCCAACTGCCTTTGACATTAAACACAGCATTCATATTGCAATAGTTAATTCCTCACTCGCACTTCAAAAGACACGCTCTGCTCTGTGGTTGAATGCGACTGCTTGTGACCGAAAAGGATTCAAATAAAGTGGAATGAGTTTGGGTTTTTCATTCATTCAGACCATTTTATGAGTTGTAACGAGACGGACTGAGGGCAGTACAATTGTCTTGAATGACATTGGATTACTTTGTTTCGGAATAGGACTGTTTTTATTTTCAGGGTCGCTTACTGACCCGAGCGCTTGCTTTTGCGCTTCCCTGCACCGCCATCGCCGCTGGTCTGCGCAGCTCGTGTTGCAGGAGCGAGACAGAGCCCGTGAACAGATGGCAGCTCTGACGATACAACGGACTGACAACTTTCTGCACACCTTTTTACAGGACCGGACCCCCAGCTCATCCCCAGAGGGAGCCCCCAACGCCCTGTCCTTCTTGGCCACCACCTGTAGCCAGGCCTGGCAGGTGGGGGGGACGGTTGTGGGAGGCACTTTGGGCTCCATGGTGGGCTCCGATGGTTCCCAGTTTCCCTATGAGGAGTCCATGAGGGTAGGCGCAGCCTCCGGGATGTTCCAAATATGGAGCAACGAGGTGGCAGTGGCCCCTAGTTCTAGTCTCAGTGCCTCCAGCTTCACTGCAGCCGCGGCCGCCCACCAGGCCATGACGTTAACGGTGCCCAAGGTCCAGTTCCCTGTTGGATGTGGACACAGTCTGCAGTCTGGCCTGGGccctcacccccacccccacgcgctccaccatcaccaccaccatcaccaccaccaccacgagcTGCCCCTGACTCCGCCGGCCGAGCCTCCATCCGCCTACTCCTTCGAGCTCTCTCCAGTCAAGGTCCTCTCGTCCCAGAGCCAGGGCCCCAATGGGCCGCCCTACTACCCTCAACACAACGCAGTCTCTGTGGGACAGAACTTCCCCAGCTTCCTCCAGAACTCTGTCTCTTCTGCCAGGCACCATCTATCCGGAGGACACCACCACGTGGGGGAGGAGGGCCAGCAGGGGTGGTGGAGCCTCCCCCAGACCACTGGCCACAGCAGCTCCTCCAACCACCCCCACGCCTTCTCCCTGGGCCGGCAGCTGGTCCTGGGTCAACAGCCCCAAATCACAGCCCTCCTCCAGGGCACCTCCAAGGGCCTGTTATCCTCCACACGCCGCTGCCGTCGCTGCAAGTGCCCCAACTGCCAGGCCAACGGCGGGGGACTCGAGTTTGGCAAGAAGAGACTGCACATCTGCCACATCCCAGAGTGCGGCAAGGTGTACAAGAAGACGTCTCACCTGAAGGCTCACCTGCGCTGGCATGCCGGGGAGAGGCCGTTCATCTGCAACTGGCTGTTCTGCGGGAAGAGCTTCACGCGCTCCGACGAGCTACAGCGCCACCTCAGAACACACACCGGGGAGAAAAGGTTTGGATGCCAGCAGTGCGGGAAGAGGTTCATGAGGAGCGACCACCTCTCCAAACACGTCAAGACTCACCAGAGTAGGAAGAGCCGGTCCTGTGGGAACACGTCAGACTCTCTGTTGGCCAATATCAAGAGAGAGTAAAGCAGACTATGAGGGCCGCATTATAGAGTCAAGAGATTGCAATGTGTGACTGTACTGTAACTAACTGCCACAGACCCTCTGAGATGGAGTGGAGCGAACCACGAGGACAGACTATATACTCTAGCATATTCTGTTGTCGTGAGAGGTATTTCATAACAAGGGAAGCCAAGTGTGTGGCGAGGTTTAGGATTTATATATGGATACAGAGCATTCACTGTGATGGGCATTTCTAGTTATCACACAAAATGATTAGCAAGATCAAAGGAACTCTTTCCTCTTAATGATGACATACTTCCAACAGTGATCATCTATCAAAGTCCAAGGCATTCATTGGATTTAGATTTGATTTGTAatattaaaatgtaaataattcaGCAAATGTGTGTAATATGCAAATAATCAACTTTCTGCATGTTTCACCTTTTAGAATCTGGAAATCTTTTTGTTAATGAACTGTTAATTACCTGAGGAGGAAAATGTATCTGAAATAAGTATACCACACATTGGTTGATTTTAGAAATGTCCTGTTTGGCCAAATGTATACATTGATCTGACGGTTGATTGGCGGGATCAGTGTgataatgttttattaattattGTTGAAATGGATTCATGTTATTTCATTATTATGTGAATTGCCAttactatactgtagatacaaaCAAACATTTGTAAGACTTTGTAaataatgtatatatttatttcacGCACAACCTTATTCAAGTTAAGACCGCATGTACATTTTAATAAATGTAAATTCCTTGCTAA
>TU946662
ACCTTTTAGAATCTGGAAATCTTTTTGTTAATGAACTGTTAATTACCTGAGGAGGAAAATGTATCTGAAATAAGTATACCACACATTGGTTGATTTTAGAAATGTCCTGTTTGGCCAAATGTATACATTGATCTGACGGTTGATTGGCGGGATCAGTGTgataatgttttattaattattGTTGAAATGGATTCATGTTATTTCATTATTATGTGAATTGCCAttactatactgtagatacaaaCAAACATTTGTAAGACTTTGTAaataatgtatatatttatttcacGCACAACCTTATTCAAGTTAAGACCGCATGTACATTTTAATAAATGTAAATTCCTTGCTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616789.2 False 2490 mRNA 0.50 2 66044662 66047730
TU946662 True 352 lncRNA 0.30 1 66044660 66045011

Neighbor

gene id symbol gene type direction distance location
LOC110532698 LOC106572673 coding downstream 150866 65883605 ~ 65893796 (-)
LOC110532700 LOC106567044 coding downstream 169451 65829202 ~ 65875211 (-)
LOC110532699 acv1b coding downstream 216762 65802777 ~ 65827900 (-)
LOC110532704 LOC106592425 coding downstream 362550 65673785 ~ 65682112 (-)
LOC110532706 LOC106572675 coding downstream 408823 65630064 ~ 65635839 (-)
LOC110532694 LOC106572659 coding upstream 34033 66081763 ~ 66104051 (-)
LOC110532692 LOC106572690 coding upstream 80186 66127916 ~ 66147685 (-)
LOC110531240 LOC106567037 coding upstream 180727 66228457 ~ 66430917 (-)
LOC118966098 LOC106567034 coding upstream 474932 66522662 ~ 66543277 (-)
LOC110532712 NA coding upstream 538879 66586609 ~ 66589365 (-)
G832506 NA non-coding downstream 730 66043669 ~ 66043932 (-)
G832504 NA non-coding downstream 3535 66040106 ~ 66041127 (-)
G832501 NA non-coding downstream 9651 66034797 ~ 66035011 (-)
G832500 NA non-coding downstream 10005 66034360 ~ 66034657 (-)
G832497 NA non-coding downstream 11896 66032380 ~ 66032766 (-)
G832511 NA non-coding upstream 1064 66048794 ~ 66049019 (-)
G832514 NA non-coding upstream 3526 66051256 ~ 66051931 (-)
G832517 NA non-coding upstream 7667 66055397 ~ 66055694 (-)
G832523 NA non-coding upstream 14238 66061968 ~ 66062243 (-)
G832521 NA non-coding upstream 28593 66076323 ~ 66077203 (-)
G832503 NA other downstream 8482 66035872 ~ 66036180 (-)
G832480 LOC106572660 other downstream 42928 66001219 ~ 66001734 (-)
G832461 NA other downstream 98069 65946182 ~ 65946593 (-)
G832401 kmt2d other downstream 249472 65793857 ~ 65795190 (-)
G832392 LOC106572669 other downstream 262864 65776583 ~ 65781798 (-)
G832991 myl6b other upstream 460988 66506278 ~ 66515999 (-)
G833029 NA other upstream 539682 66587412 ~ 66588680 (-)
G833521 NA other upstream 1131519 67179249 ~ 67185243 (-)

Expression


Co-expression Network