XLOC_026765 (cldnk)


Basic Information

Item Value
gene id XLOC_026765
gene name cldnk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50123507 ~ 50127668 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052088
aatattattattatttatattagttaCACTAATCAAATATGGTGATCTATGTCTTAAATAAACCATATACGGTTTGAActtatctttaaaaaatgtgtaagcttttgtaatcatttatttaaatatttattttatttatagtttcaCACATATTCCATTATCCTACAGACATGAAAGAAGGACGTTAAAATTCTTGTATCCGGTCTCACTGTGAACATTTATGAAAGTGCAATCAATAAAAGGTAGTAAGAAAAGATGGAGTTCACTTGAAAGAGCGAGAAGTTGAAGGATGAAAAAGAGGACTGGATGGCTGGGTTGGGCTGGGGATGGAGGAACGCGAGGGCGAGAGAACAGCGAGTCATTGTGCTGGTACACCAGGCACTGGGAGACACACTCAAGACACATTCACGCATTCacacactgacacaaacacacacataagcttGTGCTTCTGCCCACTGCTGCACAGACCCAAACTGGCATCCCAGAGGGCAGCACTTTACTCCTGTCCTCGCCTTCCAAACGTGACATTCAACCCTAGCTGAGCATCTCCATCTACAGGTTACCCCTCCATCATATTTCTATGGCATTTCGGCTCAAGCTCTGGATCCAGGAGCACAAAACAAGAACCTAGAGGATTAGCAGATGAGAGACTGAGGTCGGAGATAATCTTCAAAGTCTTCACTGTCACTCATCAGGTCCATTGCCCAGTCTGTACCATTCCTTTATCGGAAAATAACTTACAAAGGAAAAAGCTTGGCTTCGGTGATTCTTGCTGACATTGTGTACCGAAGGTTCTGTCTGTGCTCTCCATTGGACTCATCCAAGTGATCATTCTTGGGAAAGATTCACTATGGCAACCACTGGCATGCAGCTCCTCGGCCTGGTCCTGTCCATCATTGGCCTTGTGGGGGGATTCCTGGTGTGCACCCTGCCCATGTGGAGGGTCACCGCCTTCATCGGGAACAACATTGTAACGGCACAGATCACGTGGGAAGGTCTCTGGATGAATTGCATCTGGCAAAGCACAGGAGAGATTCAGTGCAAGGGGTATGACAGCTTGCTTGCTCTACCCAGTGACATGAAGGCCGCCCGGGGTCTTACGGTTCTCGCTATACTAATCTGCAGTCTTTCGCTCACATTAGGTATTCTGGGTATCAAGTGCACTGAGTGCGTGGGGCTCCCAAGCCTCAAGGCTCGCTTGGCACGTGTGTCAGGTGTGCTCTTTGTCATTGCGGGGTTCCTCATCCTTGTGCCTGTTTGCTGGACGGCCCATTCCATCATCAGGGATTTCTATGACCCCTATGTGGCGGCCCCACACAAACGTGAGCTTGGACCCGCTCTCTACTTGGGCTGGGGGGCTTCGGCTTTACTGTTGATTGGTGGATCGCTTCTCTATGCAGGGTCCAATCCACCCGGGATTCCCTCTTCTCCTACATTTAGCAGTGATGAGAGCAGCCCACGCCGAGCGGGTGGTTCTTCCCAGGTCAAGGGTTATGTTTAATGACCACCACAGGCACACCAGTTCCCGAAAGCCTTCCCTGTTAGAGTTTCCCATTGTGATAGATTCAAGTTAATTTTAATCGATTTTGTATCAACAGAATATTTGGAGAGGTAGTGAATAGAAATGTGAAATCAAGTTACCTTGCCACCTCTAATGTCCACTTATAAGTCTGTCTTTCTCTGTATTTGTCTATTATGTTATTCAATAATAAAACCTTAAATCATT
>TCONS_00052089
TCCAAGTGATCATTCTTGGGAAAGATTCACTATGGCAACCACTGGCATGCAGCTCCTCGGCCTGGTCCTGTCCATCATTGGCCTTGTGGGGGGATTCCTGGTGTGCACCCTGCCCATGTGGAGGGTCACCGCCTTCATCGGGAACAACATTGTAACGGCACAGATCACGTGGGAAGGTCTCTGGATGAATTGCATCTGGCAAAGCACAGGAGAGATTCAGTGCAAGGGGTATGACAGCTTGCTTGCTCTACCCAGTGACATGAAGGCCGCCCGGGGTCTTACGGTTCTCGCTATACTAATCTGCAGTCTTTCGCTCACATTAGGTATTCTGGGTATCAAGTGCACTGAGTGCGTGGGGCTCCCAAGCCTCAAGGCTCGCTTGGCACGTGTGTCAGGTGTGCTCTTTGTCATTGCGGGGTTCCTCATCCTTGTGCCTGTTTGCTGGACGGCCCATTCCATCATCAGGGATTTCTATGACCCCTATGTGGCGGCCCCACACAAACGTGAGCTTGGACCCGCTCTCTACTTGGGCTGGGGGGCTTCGGCTTTACTGTTGATTGGTGGATCGCTTCTCTATGCAGGGTCCAATCCACCCGGGATTCCCTCTTCTCCTACATTTAGCAGTGATGAGAGCAGCCCACGCCGAGCGGGTGGTTCTTCCCAGGTCAAGGGTTATGTTTAA

Function

symbol description
cldnk Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in integument and nervous system. Orthologous to human CLDN17 (claudin 17).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-201 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in integument and nervous system. Orthologous to human CLDN17 (claudin 17).

Ensembl:

ensembl_id ENSDARG00000042357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052088 False 1729 mRNA 0.46 2 50123507 50127668
TCONS_00052089 True 682 mRNA 0.55 1 50123732 50124413

Neighbor

gene id symbol gene type direction distance location
XLOC_026764 hgs coding downstream 5367 50076793 ~ 50118140 (-)
XLOC_026763 mrpl12 coding downstream 56979 50054187 ~ 50066528 (-)
XLOC_026762 si:ch1073-100f3.2 coding downstream 77503 50032394 ~ 50046004 (-)
XLOC_026761 NA coding downstream 185772 49934636 ~ 49937735 (-)
XLOC_026760 gcgra coding downstream 198194 49757578 ~ 49925313 (-)
XLOC_026766 btr02 coding upstream 58 50127726 ~ 50147160 (-)
XLOC_026767 rasd2 coding upstream 47498 50175166 ~ 50177658 (-)
XLOC_026768 arl16 coding upstream 144294 50271962 ~ 50277959 (-)
XLOC_026769 NA coding upstream 211112 50338780 ~ 50341046 (-)
XLOC_026770 NA coding upstream 305883 50433551 ~ 50438278 (-)
XLOC_026754 NA non-coding downstream 705162 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 750831 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 1045628 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 1086725 49023900 ~ 49036782 (-)
XLOC_026771 NA non-coding upstream 306125 50433793 ~ 50434423 (-)
XLOC_026773 CR812464.1 non-coding upstream 601191 50728859 ~ 50749116 (-)
XLOC_026777 NA non-coding upstream 1132163 51259831 ~ 51273723 (-)

Expression


Co-expression Network