LOC110532692 (LOC106572690)


Basic Information

Item Value
gene id LOC110532692
gene name LOC106572690
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66127916 ~ 66147685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616785.2
TCACTTTCGTCGTGGATCTCGTCGCTGCACTGCAGGAGCTATTCACGCCTTTCCTCACTCCAGAACGCACCTGGGCACACGCGCGGTGTAACAGAATATTACCACTTCGATCGGAAAACAGGTAGTGGTAAAAAGATGAGAAGCGGCATTTTGCTGGTGGCTTTGTTTGTCGCCATGAAACTCCACTCAAGCCAGTCCAGCTGCGAGGAACCTGCGGCTGGGGCACACAGATCAACCGACTCAGAGGAGGGTCCAGGTTTGGGAAACATCCAGCGGACCATTCTGAAGAGATATAACGGTCTGGATTATGACAGCTTTGTCGGGCTGATGGGGAGAAGGAGCGCTGATATAAATGATCTACCACCATCTCCCCATAAAAGGGAGATGGACGACGTCTTTGTTGGGCTAATGGGCAGAAGAAACTCTGAACTTGGTTTCGGCACTGGTATTGATATTGGTCACACTGCTGACATTGGTAACATGCGTCCTTTGAGGAAGGAGGTGTACCCAGAAACAAGAAAAGGAGGTCTATTCTTTAACAAGTGCAGACtgagGTTTCGTCGTGGGTTATAGACAAGACATTCATCTGGACCCATCTCTACCATCCAGCTAAGGCAACACCCCTTTTCAGAAGATTGGAGATATTATTATACAATACAGAAGATCAACGATATATTTTACAAAAACAAAGTATTCTGAAAACGTCAATGGAATTTAAACTGACCAAACCAACATATTACTGTAACATTCCAGATGGGTTGTCATAGTAACTAATAACTATACAGTTTGTATATAACATGTAttgtcacaaaaaaaaaacagtcacaTCTGATATGATCTATTTCCTTAACATAGTTGGTTCTTTTTCCCCAAAAGTTCAAGATAAAACACTTTTTCGTTGTTGTAAATTAAAATATTAATTTAA
>XM_021616786.2
TCACTTTCGTCGTGGATCTCGTCGCTGCACTGCAGGAGCTATTCACGCCTTTCCTCACTCCAGAACGCACCTGGGCACACGCGCGGTGTAACAGAATATTACCACTTCGATCGGAAAACAGGTAGTGGTAAAAAGATGAGAAGCGGCATTTTGCTGGTGGCTTTGTTTGTCGCCATGAAACTCCACTCAAGCCAGTCCAGCTGCGAGGAACCTGCGGCTGGGGCACACAGATCAACCGACTCAGAGGAGGGTCCAGGTTTGGGAAACATCCAGCGGACCATTCTGAAGAGATATAACGGTCTGGATTATGACAGCTTTGTCGGGCTGATGGGGAGAAGGAGCGCTGATATAAATGATCTACCACCATCTCCCCATAAAAGGGAGATGGACGACGTCTTTGTTGGGCTAATGGGCAGAAGAAACTCTGAACTTGGTAACATGCGTCCTTTGAGGAAGGAGGTGTACCCAGAAACAAGAAAAGGAGGTCTATTCTTTAACAAGTGCAGACtgagGTTTCGTCGTGGGTTATAGACAAGACATTCATCTGGACCCATCTCTACCATCCAGCTAAGGCAACACCCCTTTTCAGAAGATTGGAGATATTATTATACAATACAGAAGATCAACGATATATTTTACAAAAACAAAGTATTCTGAAAACGTCAATGGAATTTAAACTGACCAAACCAACATATTACTGTAACATTCCAGATGGGTTGTCATAGTAACTAATAACTATACAGTTTGTATATAACATGTAttgtcacaaaaaaaaaacagtcacaTCTGATATGATCTATTTCCTTAACATAGTTGGTTCTTTTTCCCCAAAAGTTCAAGATAAAACACTTTTTCGTTGTTGTAAATTAAAATATTAATTTAA
>TU946673
TGGATCTCGTCGCTGCACTGCAGGAGCTATTCACGCCTTTCCTCACTCCAGAACGCACCTGGGCACACGCGCGGTGTAACAGAATATTACCACTTCGATCGGAAAACAGGTAGTGGTAAAAAGATGAGAAGCGGCATTTTGCTGGTGGCTTTGTTTGTCGCCATGAAACTCCACTCAAGCCAGTCCAGCTGCGAGGAACCTGCGGCTGGGGCACACAGATCAACCGACTCAGAGGAGGGTCCAGGTTTGGGAAACATCCAGCGGACCATTCTGAAGAGATATAACGGTCTGGATTATGACAGCTTTGTCGGGCTGATGGGGAGAAGGAGCGCTGATATAAATGATCTACCACCATCTCCCCATAAAAGGGAGATGGACGACGTCTTTGTTGGGCTAATGGGCAGAAGAAACTCTGAACTTGGTAACATGCGTCCTTTGAGGAAGGAGGTGTACCCAGAAACAAGAAAAGGAGGTCTATTCTTTAACAAGTGCAGACtgagGTTTCGTCGTGGGTTATAGACAAGACATTCATCTGGACCCATCTCTACCATCCAGCTAAGGCAACACCCCTTTTCAGAAGATTGGAGATATTATTATACAATACAGAAGATCAACGATATATTTTACAAAAACAAAGTATTCTGAAAACGTCAATGGAATTTAAACTGACCAAACCAACATATTACTGTAACATTCCAGATGGGTTGTCATAGTAACTAATAACTATACAGTTTGTATATAACATGTAttgtcacaaaaaaaaaacagtcacaTCTGATATGATCTATTTCCTTAACATAGTTGGTTCTTTTTCCCCAAAAGTTCAAGATAAAACACTTTTTCGTTGTTGTAAATTAAAATATTAATTTAA
>TU946674
TTCTGCATCCGATTGGACTCGCGCAGATACCCAGCTATCATTTAATAAACAGAGGTGGACTGGACCTCTCACTTTCGTCGTGGATCTCGTCGCTGCACTGCAGGAGCTATTCACGCCTTTCCTCACTCCAGAACGCACCTGGGCACACGCGCGGTGTAACAGAATATTACCACTTCGATCGGAAAACAGGTAGTGGTAAAAAGATGAGAAGCGGCATTTTGCTGGTGGCTTTGTTTGTCGCCATGAAACTCCACTCAAGCCAGTCCAGCTGCGAGGAACCTGCGGCTGGGGCACACAGATCAACCGACTCAGAGGAGGGTCCAGGTTTGGGAAACATCCAGCGGACCATTCTGAAGAGATATAACGGTCTGGATTATGACAGCTTTGTCGGGCTGATGGGGAGAAGGAGCGCTGATATAAATGATCTACCACCATCTCCCCATAAAAGGGAGATGGACGACGTCTTTGTTGGGCTAATGGGCAGAAGAAACTCTGAACTTGGTAACATGCGTCCTTTGAGGAAGGAGGTGTACCCAGAAACAAGAAAAGGAGGTCTATTCTTTAACAAGTGCAGACtgagGTTTCGTCGTGGGTTATAGACAAGACATTCATCTGGACCCATCTCTACCATCCAGCTAAGGCAACACCCCTTTTCAGAAGATTGGAGATATTATTATACAATACAGAAGATCAACGATATATTTTACAAAAACAAAGTATTCTGAAAACGTCAATGGAATTTAAACTGACCAAACCAACATATTACTGTAACATTCCAGATGGGTTGTCATAGTAACTAATAACTATACAGTTTGTATATAACATGTAttgtcacaaaaaaaaaacagtcacaTCTGATATGATCTATTTCCTTAACATAGTTGGTTCTTTTTCCCCAAAAGTTCAAGATAAAACACTTTTTCGTTGTTGTAAATTAAAATATTAATTTAA

Function

NR:

description
uncharacterized protein LOC110532692 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616785.2 False 925 mRNA 0.42 8 66127916 66147617
XM_021616786.2 False 883 mRNA 0.42 7 66127916 66147617
TU946673 False 871 TUCP 0.42 7 66127916 66147605
TU946674 True 951 TUCP 0.43 7 66127916 66147685

Neighbor

gene id symbol gene type direction distance location
LOC110532694 LOC106572659 coding downstream 23865 66081763 ~ 66104051 (-)
LOC110532695 LOC106572686 coding downstream 80186 66044660 ~ 66047730 (-)
LOC110532698 LOC106572673 coding downstream 234120 65883605 ~ 65893796 (-)
LOC110532700 LOC106567044 coding downstream 252705 65829202 ~ 65875211 (-)
LOC110532699 acv1b coding downstream 300016 65802777 ~ 65827900 (-)
LOC110531240 LOC106567037 coding upstream 80840 66228457 ~ 66430917 (-)
LOC118966098 LOC106567034 coding upstream 375045 66522662 ~ 66543277 (-)
LOC110532712 NA coding upstream 438992 66586609 ~ 66589365 (-)
LOC110531241 LOC106572714 coding upstream 449583 66597200 ~ 66619536 (-)
l1cama LOC106572712 coding upstream 480303 66627920 ~ 66751125 (-)
G832532 NA non-coding downstream 18896 66108795 ~ 66109020 (-)
G832520 NA non-coding downstream 46526 66077952 ~ 66081390 (-)
G832521 NA non-coding downstream 50713 66076323 ~ 66077203 (-)
G832523 NA non-coding downstream 65673 66061968 ~ 66062243 (-)
G832517 NA non-coding downstream 72222 66055397 ~ 66055694 (-)
G832549 NA non-coding upstream 206 66147823 ~ 66148026 (-)
G832562 NA non-coding upstream 12764 66160381 ~ 66160602 (-)
G832565 NA non-coding upstream 14979 66162596 ~ 66162939 (-)
G832570 NA non-coding upstream 24050 66171667 ~ 66171877 (-)
G832580 NA non-coding upstream 43341 66190958 ~ 66191394 (-)
G832503 NA other downstream 91736 66035872 ~ 66036180 (-)
G832480 LOC106572660 other downstream 126182 66001219 ~ 66001734 (-)
G832461 NA other downstream 181323 65946182 ~ 65946593 (-)
G832401 kmt2d other downstream 332726 65793857 ~ 65795190 (-)
G832392 LOC106572669 other downstream 346118 65776583 ~ 65781798 (-)
G832991 myl6b other upstream 361101 66506278 ~ 66515999 (-)
G833029 NA other upstream 439795 66587412 ~ 66588680 (-)
G833521 NA other upstream 1031632 67179249 ~ 67185243 (-)
LOC110531246 LOC106572701 other upstream 1300834 67327762 ~ 67455661 (-)

Expression


Co-expression Network