LOC110532708 (LOC106572691)


Basic Information

Item Value
gene id LOC110532708
gene name LOC106572691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66478086 ~ 66481544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616804.2
GGGCCAGTCAATCTCCTAAAGGCTAAACTCCGACATATTCGTGCCAGTCGGAGATGAAAGTCTCAGGCTCACTGATGGATAATTGAGGGAAAGAAAGCGAACTTGGAAAAGACTGTGACACTGTGCGCAACAGAAAGAAACGGTTGAGTTAAATCATTTTCGTTGGTATTGGGACTTTGGAAGTTAGCCAGACGTCTGACAAATTTGGAAGTGCAAGTTGTAAACAGATCACAATGTCTAAACGTGGAGAGGTGTCTGAGCTGGTCAGTTCCCTGGGCTGGCTAGAGGAGGACATGAGCTcccaggatggagagggaggtcTAGAGATGGGGGGCCGCTATAGCCTGGGCCCTGAGGGCCTCGGAAGCATTGGGCATGGCAGCGAAGGCATTGAGGATCAGGAGGAGGAAGACATTTATAATGATGGTGATGAGGAGGCTGGAATGGACGGAGAGAACGAGGCTCCAAAACGGAGGGGccccaagaagaagaagatgaccaGAGCCAGACAGGAGAGGTTCAAGGCGAGACGCAGCAAAGCCAATGCCCGCGAACGCTCCCGCATGCACGGCCTAAACGATGCACTAGAAGTGTTACGCAAGGTCATGCCCTGCTACTCCAAGACCCAGAAACTGTCCAAGATCGAGACCCTGCGGCTGGCCCACAACTACATATGGGCCCTGTCTGAGGTGCTGGAGAGCGGTCAGTCCCCAGAGAGCCACGGCTTCATAGAGATGCTGTGTAAAGGCCTGTCCCAGCCCACTAGCAACCTGGTGGCTGGGTGTCTCCAGCTGGGGCCTTCAGCCCCCTTGATGATCAACAAGCTGGATGAGAAGCCCTGTGGCGCTCTGGGAGTCGGGGGTGGTCTAGGGGGCCAGCCTTGTGGTCATCAACCACTGAGTGGTCACTACCCCTCTACGGGCCTGCCTAGCCCTCCCTACGGTTCACTGGAGGCCTCCCACCTACTCCACATGAAAAGCTTCAAGGGAGTGCCCTACGAGCAGCACCCCTCCCCTAAAGATTGTAGTAGCAATGGCACCCCCCCTTACGACGGgcccctcactcctcccctcaGCATCAGCAGCAACTTCACCCTGAAGCAAGAGCCCTCCCCCCACGAGGCTGAGAGGAACTACCCCTCCCACTACCTCTCGTCCCTTCCCCattacccccccacctctctgggCGGGCTGCCAGGGCCTCAAGCCTACCTCTTCCAGGCCTCACGCTACGAACTGCCCCTAGACATCCAGGCATTCGACTCCTTCCCTCCACCACACATGATCGCCTCACAGATGGGCACCATCTACAGTGAGTGAAGGGGAAAGTGAAGCTGCGTGGCCAGGGGAGAGATCTGTACAGAGCCCTGCCTCTGGTCCTGCAATCCTGCTGCCCATACGTATAGGCCCGTGACTCTATGAATTACTGTATAGAGAGACAACGATATGACATTTACACGGTCTGCTATCTTACTCTGGGAGACTGTAGAATGCTCAGAGAGAGACTCAACTCAACCTAACTGATCATAAAGAACTACTGAAAAGATAAAGATACACCCTTAATATTATTACTCATTTATTCTCATTGTTTATTGTTTCTATTTCTGTCTGGATAAGTCCTCCCCCAGTTCCTATTACAGGCTATGTAGCTATAATACTTGTTATTGTTTACCAAATCAGATATCCAGGTATATGCACTGACTGCACACTGTCTCAGATATCCATGACCAGGGATCTCCACTAAATGGCTCTACACAGTCTACGCAAACAGCCTACTGAGGTCCGCTTGCGTCAAGCATTCCAAAAATCCTGCGAAATAAATGTACGTAGAACTAGGTAGAGAGCAAGACTGTGTAGACCCCTTAAAACCTAGGGGTACTTGGGTAGAAAGTCCTCAGTGTGCCTGACAATGAGGAGGAAGTGACACAATGTTGTTCTACCCTCATTTACTATAACTTCTGCACTTAGGCCAATACTGTAGCCAGTATCCTATTAGCCGTATGAACAGAAATGAATTTAATTTATATCtgtatttaatatttattttttataactaTTGTCTGTTCCTTTTTGCATTTTCTCAGCACTGTTTTCTGTTTTGCTGTCTTCTTCGTGCAGTGCATTGTCAGTCACTGGCAGCTTTACTGATGAAGTAttacaattatttatttgaaGTATCTTTCAAGTATTTCTCAGTTTTGGTGTCGATCGCTACTTTGTCATactatttttgtaaatattttgctGTTTCGCACTTAATTGAATAAATATTCGTATTATATACTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0071698 olfactory placode development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K09079 NEUROD4, ATOH3, MATH3; neurogenic differentiation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616804.2 True 2285 mRNA 0.49 2 66478086 66481544

Neighbor

gene id symbol gene type direction distance location
birc5b LOC106572692 coding upstream 21182 66451326 ~ 66456904 (+)
LOC118966097 NA coding upstream 249441 66227416 ~ 66228645 (+)
LOC110532691 LOC106572688 coding upstream 348243 66110389 ~ 66129843 (+)
LOC110532696 LOC106567043 coding upstream 436898 65946190 ~ 66041188 (+)
LOC110532701 LOC106572669 coding upstream 676272 65754497 ~ 65801814 (+)
LOC118965939 NA coding downstream 135 66481679 ~ 66482379 (+)
LOC110532709 myl6b coding downstream 24932 66506476 ~ 66516002 (+)
LOC110532711 LOC106572715 coding downstream 101271 66582815 ~ 66593585 (+)
LOC118966099 NA coding downstream 138021 66615300 ~ 66628653 (+)
LOC110532716 LOC106572708 coding downstream 546485 67028029 ~ 67042094 (+)
G832844 NA non-coding upstream 3496 66474365 ~ 66474590 (+)
G832842 NA non-coding upstream 4495 66473342 ~ 66473591 (+)
G832832 NA non-coding upstream 12533 66465209 ~ 66465553 (+)
G832712 NA non-coding upstream 45668 66432055 ~ 66432418 (+)
G832711 NA non-coding upstream 46097 66431698 ~ 66431989 (+)
G832850 NA non-coding downstream 4474 66486018 ~ 66486252 (+)
G832851 NA non-coding downstream 5442 66486986 ~ 66487456 (+)
G832852 NA non-coding downstream 8749 66490293 ~ 66490889 (+)
G832905 NA non-coding downstream 115674 66597218 ~ 66600114 (+)
G832902 LOC106572714 non-coding downstream 124232 66605776 ~ 66616927 (+)
LOC110532705 LOC106567051 other upstream 806603 65669353 ~ 65671483 (+)
G831865 NA other upstream 854770 65622938 ~ 65623316 (+)
G831810 NA other upstream 963101 65514393 ~ 65514985 (+)
LOC110531237 LOC106567057 other upstream 1109954 65186569 ~ 65405501 (+)
G833100 LOC106613929 other downstream 277734 66759278 ~ 66759673 (+)
G833139 LOC100380641 other downstream 332920 66814464 ~ 66821639 (+)
G833241 LOC106572720 other downstream 450144 66931688 ~ 66934487 (+)
G833541 NA other downstream 731876 67213420 ~ 67213884 (+)
G833906 LOC100194703 other downstream 1139334 67620878 ~ 67621366 (+)

Expression


Co-expression Network