XLOC_026766 (btr02)


Basic Information

Item Value
gene id XLOC_026766
gene name btr02
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50127726 ~ 50147160 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052090
GGATGGAGTCCACCCTCAGTCAACTGTCGGAGAAGCACTTCTTGTGCTCTCTGTGTGAGGAGATCTTCAGTAACCCTGTGACGACTCCGTGTGGACACAGTTTCTGTAAAGCGTGTCTGCGTGTTTACTGGAGCCGTAGCGGTTCAGACGAGTGTCCGCTCTGCCGGAAGGCCTTCGGCTCCAGACCGCGCCTCAGCGTCAACCGCATACTGGCTGACGTCACTGAGAACTACAGAAAAACACGCCTGGCTGCCAAATCCAAGTTCTTCAGTATGGATGAACTTCAAGATGAGCCCAAGAATGAGGGAGAGGTGGAGCAAATGATCCAGGAAAGAGTTCAGAAGATTGAGAAACTTCAGAATTCACTAAAGCTAGTGAAGAGCACATGTCTCCGTGAAGTTCAGGAGAGTCAGAGGGTGTTTTCCAATTTGCTTAGTACATTAGAGAAGAGCCATAAACTGGTCGTGACTGCAGTTGAACAGAAACAAAGAGAAGCAGAGAAAAGAGTCGAAAGACTTGTAAAAAGCCTGGAAAAAGAAATCCTTGAGCTGGAAAATGGACAATCCAATCTAGAGCACCTGAATGACATGGAGCGTCTTAAAAAGagcttcagtcacatACCTCGGCCAATGAGAGACTGGTCTAAAGTCATTCTGGAGACTGACCCTTGTGTTGGCTTCACCCGACAGACTGTGACTGACTTCATGGATACAGTGACGATGGAAGCTAAAAGACTTTCAAAAACTGAACTCAAGAGGTTGCAGAAATATTCAGTTGATGTGAATCTGAATCCTCGGACAGCTCATGCTTACCTCTACATCTCTGAGGATCGGAAGGAGGTCAGGCATGCAAATAAGCAACAAGAAGTTCCAGAAAACCCCAAGAGGTTTGACCGGGTGATCAATGTCATGTCCAAGGAAGCTTTTCGCTATGGCAGACACCTTTGGGAAGTGGATGTTGGAGATAAGACTGACTGGGATTTGGGGGTAGCCAAACAATCTGTCAACAGGAAAGGAAAATTCACAATATGTCCATCCAATGGTTTCTGGACGCTCAGTTTAAAGAATGGCTCTCAGTATGTCGCAAACACATACCCTCCGACTTCCTTCAACCTCAGTCACAAGCCTAAAAGGGTGTCCATTTACCTGGACTATGATGAGGGACGCGTATCTTTCTATTGTTCGGATACTGGGACTCATATCTACTCTTTCAGAGACAGTTTCACAGATAAGCTCCACCCTATCCTCAGCCCAGGACGACCCCATGGAGAGAAGAACACTGCTCCCCTTATCATCAGCAGCAGCTGCTGCAGCATCTGAACAATCTGCTGCCACTACAGCTTTCACTTTCTCTCCCACTACCATTGCAACATATAGTTGTCTGTTATTATTAAActtatatcttttatttattattgttattactttttaattactatttacATGAAGCATACCTCAAACTGTGATCTTTTTTTAGCACATATCAGCTTTTTTTAATGATAAGGATCATTTTCATGGCAACCCCTTTTAGCAAAAAGTtaatttattatatgaatataaCCATCATAACttctaaaaatgttttgtaatattgacaaaataaaatTTTGACTTCTAAGTAAATCATTATGCTTCAATAATCGTTCCTAATgcttaaaaaaatctgattagtTTAGTTTGTTGACTGAAATATTGAAGTACTTGATTATAATTTAAACTTTAGTAGGTTATTTAGtattaagttaatattttaaatgtaccaAATTACTCGTTCTTAATAACAAATGTAATGCaataatgaatatatttaaaaacctgACAAATATGTTTGAATATAAAtggcataaaatatattttagttcaccATAATTATACTGTAAATGCTTTCAGTAGATGTAATATTGAACAAATGAATTATGTGCTTAAGCTCTACTTATGTGCTCTGGTCACAGTTGCAATAATTTTTCAAATACTGTTACACAAAATATTTTCATCAACAactaaataattgtttaaattacacAACAAATTTAGACTGcactgaaatacatttttaaatattatgttttgttCTAAAGTCTGATAAAGTGTACTTGTTTTTCCACAAGGGAATGCATAGCAATATCTTGGCGACTATCCACAACCTCAAACCATCATGGCAGG
>TCONS_00052091
ACTTTATGAAACTCACCATACTGAAAGAGACAAGAGCGACTCACTACAAACACTAAAGGCACTACAGGGATGGAGTCCACCCTCAGTCAACTGTCGGAGAAGCACTTCTTGTGCTCTCTGTGTGAGGAGATCTTCAGTAACCCTGTGACGACTCCGTGTGGACACAGTTTCTGTAAAGCGTGTCTGCGTGTTTACTGGAGCCGTAGCGGTTCAGACGAGTGTCCGCTCTGCCGGAAGGCCTTCGGCTCCAGACCGCGCCTCAGCGTCAACCGCATACTGGCTGACGTCACTGAGAACTACAGAAAAACACGCCTGGCTGCCAAATCCAAGTTCTTCAGTATGGATGAACTTCAAGATGAGCCCAAGAATGAGGGAGAGGTGGAGCAAATGATCCAGGAAAGAGTTCAGAAGATTGAGAAACTTCAGAATTCACTAAAGCTAGTGAAGAGCACATGTCTCCGTGAAGTTCAGGAGAGTCAGAGGGTGTTTTCCAATTTGCTTAGTACATTAGAGAAGAGCCATAAACTGGTCGTGACTGCAGTTGAACAGAAACAAAGAGAAGCAGAGAAAAGAGTCGAAAGACTTGTAAAAAGCCTGGAAAAAGAAATCCTTGAGCTGGAAAATGGACAATCCAATCTAGAGCACCTGAATGACATGGAGCGTCTTAAAAAGGTCACTGAcaacatcagttttttttttttttttatctgtaattGTTACCATAGAAAACATTTATTGGAATAAATTGATATATTTGACTTGACCATTATAGGTTATCATTTTTGCCTTACTATATGCATAATATTTGAATACATTCAGTAATTGAGAAATAGTTTTCTCATCCTAATGCTGTTCAAAACCTCTACACTctgataattttaataaaatattatgaaaacctgaaaaaaatgtatgcagCTGTATTCACAGTCAATATTTTACGTCTcttctaaaaaaatattaaagaatttGAGTATTACTTAAGTAGGATTAAGTAAAAATAATTGTTGTCCTTAAtctgcagagcttcagtcacatACCTCGGCCAATGAGAGACTGGTCTAAAGTCATTCTGGAGACTGACCCTTGTGTTGGCTTCACCCGACAGACTGTGACTGACTTCATGGATACAGTGACGATGGAAGCTAAAAGACTTTCAAAAACTGAACTCAAGAGGTTGCAGAAATATTCAGTTGATGTGAATCTGAATCCTCGGACAGCTCATGCTTACCTCTACATCTCTGAGGATCGGAAGGAGGTCAGGCATGCAAATAAGCAACAAGAAGTTCCAGAAAACCCCAAGAGGTTTGACCGGGTGATCAATGTCATGTCCAAGGAAGCTTTTCGCTATGGCAGACACCTTTGGGAAGTGGATGTTGGAGATAAGACTGACTGGGATTTGGGGGTAGCCAAACAATCTGTCAACAGGAAAGGAAAATTCACAATATGTCCATCCAATGGTTTCTGGACGCTCAGTTTAAAGAATGGCTCTCAGTATGTCGCAAACACATACCCTCCGACTTCCTTCAACCTCAGTCACAAGCCTAAAAGGGTGTCCATTTACCTGGACTATGATGAGGGACGCGTATCTTTCTATTGTTCGGATACTGGGACTCATATCTACTCTTTCAGAGACAGTTTCACAGATAAGCTCCACCCTATCCTCAGCCCAGGACGACCCCATGGAGAGAAGAACACTGCTCCCCTTATCATCAGCAGCAGCTGCTGCAGCATCTGAACAATCTGCTGCCACTACAGCTTTCACTTTCTCTCCCACTACCATTGCAACATATAGTTGTCTGTTATTATTAAActtatatcttttatttattattgttattactttttaattactatttacATGAAGCATACCTCAAACTGTGATCTTTTTTTAGCACATATCAGCTTTTTTTAATGATAAGGATCATTTTCATGGCAACCCCTTTTAGCAAAAAGTtaatttattatatgaatataaCCATCATAACttctaaaaatgttttgtaatattgacaaaataaaatTTTGACTTCTAAGTAAA
>TCONS_00052092
TTGTGGTCTGATTCACTTTATGAAACTCACCATACTGAAAGAGACAAGAGCGACTCACTACAAACACTAAAGGCACTACAGGGATGGAGTCCACCCTCAGTCAACTGTCGGAGAAGCACTTCTTGTGCTCTCTGTGTGAGGAGATCTTCAGTAACCCTGTGACGACTCCGTGTGGACACAGTTTCTGTAAAGCGTGTCTGCGTGTTTACTGGAGCCGTAGCGGTTCAGACGAGTGTCCGCTCTGCCGGAAGGCCTTCGGCTCCAGACCGCGCCTCAGCGTCAACCGCATACTGGCTGACGTCACTGAGAACTACAGAAAAACACGCCTGGCTGCCAAATCCAAGTTCTTCAGTATGGATGAACTTCAAGATGAGCCCAAGAATGAGGGAGAGGTGGAGCAAATGATCCAGGAAAGAGTTCAGAAGATTGAGAAACTTCAGAATTCACTAAAGCTAGTGAAGAGCACATGTCTCCGTGAAGTTCAGGAGAGTCAGAGGGTGTTTTCCAATTTGCTTAGTACATTAGAGAAGAGCCATAAACTGGTCGTGACTGCAGTTGAACAGAAACAAAGAGAAGCAGAGAAAAGAGTCGAAAGACTTGTAAAAAGCCTGGAAAAAGAAATCCTTGAGCTGGAAAATGGACAATCCAATCTAGAGCACCTGAATGACATGGAGCGTCTTAAAAAGagcttcagtcacatACCTCGGCCAATGAGAGACTGGTCTAAAGTCATTCTGGAGACTGACCCTTGTGTTGGCTTCACCCGACAGACTGTGACTGACTTCATGGATACAGTGACGATGGAAGCTAAAAGACTTTCAAAAACTGAACTCAAGAGGTTGCAGAAATATTCAGTTGATGTGAATCTGAATCCTCGGACAGCTCATGCTTACCTCTACATCTCTGAGGATCGGAAGGAGGTCAGGCATGCAAATAAGCAACAAGAAGTTCCAGAAAACCCCAAGAGGTTTGACCGGGTGATCAATGTCATGTCCAAGGAAGCTTTTCGCTATGGCAGACACCTTTGGGAAGTGGATGTTGGAGATAAGACTGACTGGGATTTGGGGGTAGCCAAACAATCTGTCAACAGGAAAGGAAAATTCACAATATGTCCATCCAATGGTTTCTGGACGCTCAGTTTAAAGAATGGCTCTCAGTATGTCGCAAACACATACCCTCCGACTTCCTTCAACCTCAGTCACAAGCCTAAAAGGGTGTCCATTTACCTGGACTATGATGAGGGACGCGTATCTTTCTATTGTTCGGATACTGGGACTCATATCTACTCTTTCAGAGACAGTTTCACAGATAAGCTCCACCCTATCCTCAGCCCAGGACGACCCCATGGAGAGAAGAACACTGCTCCCCTTATCATCAGCAGCAGCTGCTGCAGCATCTGAACAATCTGCTGCCACTACAGCTTTCACTTTCTCTCCCACTACCATTGCAACATATAGTTGTCTGTTATTATTAAActtatatctttta
>TCONS_00052093
CCAAAAGACACAATTTTGCATTGTACAGTTTAttataatatactttttttaactgtatttttattcCAATTTATTCTGTTCTAATGAATTGTACATgtattcaaaattattttatttggtaTTCTTCAATGGTCGAGCAACACCTGCATATTATGTATGAAATATCcagtacatttttaataaaattttaatcgTATTGACAgataattctctctctctctctctctctctctctctctctctctctctctaataaaaaaattaagtataaacattaaaaatgtttacataagCTATTCGCTTTAAGGCCTATCTATTAAGGAGAGTTTACTGATCATATACATTATTTTACTTGGCTTTATCCCGATTCTTCAACATGTTGATGCAAAATCGGTTTTGTATACACCATTGAGGGTTAACTAATAAAAGTTGCGAAATACAGGAAGCCTCACGCGCACTGTCTTTTTTCCCAGTCAATTTCTGTCGCATTTTATCAACTCGTTTgaggaaaaagaaaagagaatGGGGATGGAGTCCACCCTCAGTCAACTGTCGGAGAAGCACTTCTTGTGCTCTCTGTGTGAGGAGATCTTCAGTAACCCTGTGACGACTCCGTGTGGACACAGTTTCTGTAAAGCGTGTCTGCGTGTTTACTGGAGCCGTAGCGGTTCAGACGAGTGTCCGCTCTGCCGGAAGGCCTTCGGCTCCAGACCGCGCCTCAGCGTCAACCGCATACTGGCTGACGTCACTGAGAACTACAGAAAAACACGCCTGGCTGCCAAATCCAAGTTCTTCAGTATGGATGAACTTCAAGATGAGCCCAAGAATGAGGGAGAGGTGGAGCAAATGATCCAGGAAAGAGTTCAGAAGATTGAGAAACTTCAGAATTCACTAAAGCTAGTGAAGAGCACATGTCTCCGTGAAGTTCAGGAGAGTCAGAGGGTGTTTTCCAATTTGCTTAGTACATTAGAGAAGAGCCATAAACTGGTCGTGACTGCAGTTGAACAGAAACAAAGAGAAGCAGAGAAAAGAGTCGAAAGACTTGTAAAAAGCCTGGAAAAAGAAATCCTTGAGCTGGAAAATGGACAATCCAATCTAGAGCACCTGAATGACATGGAGCGTCTTAAAAAGagcttcagtcacatACCTCGGCCAATGAGAGACTGGTCTAAAGTCATTCTGGAGACTGACCCTTGTGTTGGCTTCACCCGACAGACTGTGACTGACTTCATGGATACAGTGACGATGGAAGCTAAAAGACTTTCAAAAACTGAACTCAAGAGGTTGCAGAAATATTCAGTTGATGTGAATCTGAATCCTCGGACAGCTCATGCTTACCTCTACATCTCTGAGGATCGGAAGGAGGTCAGGCATGCAAATAAGCAACAAGAAGTTCCAGAAAACCCCAAGAGGTTTGACCGGGTGATCAATGTCATGTCCAAGGAAGCTTTTCGCTATGGCAGACACCTTTGGGAAGTGGATGTTGGAGATAAGACTGACTGGGATTTGGGGGTAGCCAAACAATCTGTCAACAGGAAAGGAAAATTCACAATATGTCCATCCAATGGTTTCTGGACGCTCAGTTTAAAGAATGGCTCTCAGTATGTCGCAAACACATACCCTCCGACTTCCTTCAACCTCAGTCACAAGCCTAAAAGGGTGTCCATTTACCTGGACTATGATGAGGGACGCGTATCTTTCTATTGTTCGGATACTGGGACTCATATCTACTCTTTCAGAGACAGTTTCACAGATAAGCTCCACCCTATCCTCAGCCCAGGACGACCCCATGGAGAGAAGAACACTGCTCCCCTTATCATCAGCAGCAGCTGCTGCAGCATCTGA
>TCONS_00052094
GGCCTATCTATTAAGGAGAGTTTACTGATCATATACATTATTTTACTTGGCTTTATCCCGATTCTTCAACATGTTGATGCAAAATCGGTTTTGTATACACCATTGAGGGTTAACTAATAAAAGTTGCGAAATACAGGAAGCCTCACGCGCACTGTCTTTTTTCCCAGTCAATTTCTGTCGCATTTTATCAACTCGTTTgaggaaaaagaaaagagaatGGTAGGATGCTGCATGCCGCTGATTGGATGGAGGGTGGATGTGCCAATAGTATCTGAATGCAACcttgatgcaagctgagactgcatatctcgaTGCCTAATGCGCATGACCTTCAAAAATTTCTGATAGCATATCTCCAATTCTTCATCTCCTGTCAGCACTACTCTTAGTATGGCGACAGTCAAAGAGAAAACACGGAGAAGAGATAGCTTAGACAGCCCTCCTAACATGAGCAGTGAAACACCACTAAGGATGCTGATCTTCGGCAGCTCTAGTGATGTTCAGATCTCAACTTCCCAGTCTATATTGGGGCAAGACGTCTTTTCCAGATTTGAAGTCAACATTTTAGCAACCAAGAAAAGCTCAGGGGTCGTTCAGGAAAGAAAAACAACTCTGATCAATACCCCAAATCTTCAGGATAACAGAGGCTTACCGGATCGTATCGTCCAGAGGGAACTGAGGAAGGCTGTTTGTTGCTCTTGTCCTGGTCCTCATGCTGTGCTGCTCATTCTAGATGCGCTTCATTTGACCGCAGACACTACAGACATACTTAAGCCTGTGGTGCACTACTTTGGTGAACAAGTTTTGAAGCACATACTGATTGTTTTATACCAAAAGAAAAATCGGAGAGCTCTGTCCATAGAGGATGAGGTGAAGAGGAATAAGAGCTTTAGGGAGATTGCAGAGAAATGTGGCCACAATTACCTGTTCTTCAATGAAGAAATGAACCAGACTCATGAGGGAAGCCAGACACAAGCTCTGTTCACCAAGATTGATGAGATGGTCTCGGAGCATGGAGTTTACTCAAACATGGAGTTCAAGGATGCTGATAAAAGAATTCAGATCGAGGAGCGCTTCATCAGAAAATCCATGGAGAAGCAGATCAGGCAGACAATGGAAATGCTGGAGAAGAAGCATTCAGGAGAAGCTCTGGTCAGAGAGATGAAGAACTATGAAGATAAGATACAGATAGAGTGCAGAGAAAAAGCAGAGCTGGCCGTCGCTGATAAAATTGGCTTCACACTTAGAGTTGTTGATTATGCTGTTGCTGTGGGGAAAGGAGCGTTTGTTGGGGCACTTCTGGGGTTTGCAGTGGGAAATGAAGGAATGGCAATCGGAGCTGCTATTGGTGCTGGTCTTGGTGGAGTACTTGGAGGAGCAGTAAATGCAGCATGGAGCTACATATCCAGCTCATTTCCAGATGCCCTCAGGGATTCCACCTAgtccatttttgtttttgtttttatttttctggggtaatatgtaattaaaaatattatattttgtgggaatacccaaaaataaaatttctaATGCACATATATATCAATTTTGCTTTAGGAACTTCACTTAGAACTGTTTCTaggtatttacatttttaaaaccccCAGAATCTAGATATTCAGATAGTTGTCTCTGGAACAAATATTTACCTATACGCAGTGTTGTACAGtaacaaattaaatacaaaacctctttaattaagtagtttttcctCAGGAATTATCTTTTCTAAAAATGATTTTGAACAAAGCCAGAGCAGAATATTTGGGCATCTCACAGCAACACTGCTGCTTTGTCCCTGAATAAATCTGCTTTTGAATTCAAATTTTGAGTCAAAGATTAAATTTCTCTTGAGCTggcagaataattttttttaaaataaattattactttgcaacctctaaaatatattctatatAGTATATAAATGAATGTGCATGTGGTAGGATTTGCCATAGTGATTTTCTCAAaccttatttttaaatttgaatgTTGTCACACATTTTTTATGAAAGACAGACATaccaaaatattatataataccaAGCCCTTATATTGCACGCTGCTTTGTGCTTCACACTACTCATACAACAGAGGTTAACAATTAATCCTGTGGATTCAAATGCTGACGTTTTACAGTAAACACTATAAAACCTTGGGTTGACGACCTTGTTGGCATGTTCTCAAGTATTCAGCCTGTTTATGTAAAGTGTCAAACTTACCTTTAAACAGGGTTGAAAGCAGAATAATGGTAACCTgggttcaccaaaaaaaaattaattctgctGTAATTTGCTCATCTTTAACTTGTTGCAAACTTATATTTGGGTTTGGGTTTCTTTATATTGTTGAGCATATacacactacatgacaaaagtcttgtcgtcgatctcagttgtaagaagGACAAAT

Function

symbol description
btr02 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human RNF39 (ring finger protein 39) and TRIM48 (tripartite motif containing 48).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-228 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human RNF39 (ring finger protein 39) and TRIM48 (tripartite motif containing 48).
ZDB-GENE-131121-595 Predicted to enable GTP binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000052215 ENSDARG00000086228

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052090 False 2162 mRNA 0.39 6 50127726 50136424
TCONS_00052091 False 2041 lncRNA 0.40 6 50128266 50139846
TCONS_00052092 False 1488 mRNA 0.46 7 50128481 50139860
TCONS_00052093 False 1845 mRNA 0.42 7 50128569 50147160
TCONS_00052094 True 2415 mRNA 0.39 4 50141691 50146854

Neighbor

gene id symbol gene type direction distance location
XLOC_026765 cldnk coding downstream 58 50123507 ~ 50127668 (-)
XLOC_026764 hgs coding downstream 9586 50076793 ~ 50118140 (-)
XLOC_026763 mrpl12 coding downstream 61198 50054187 ~ 50066528 (-)
XLOC_026762 si:ch1073-100f3.2 coding downstream 81722 50032394 ~ 50046004 (-)
XLOC_026761 NA coding downstream 189991 49934636 ~ 49937735 (-)
XLOC_026767 rasd2 coding upstream 28006 50175166 ~ 50177658 (-)
XLOC_026768 arl16 coding upstream 124802 50271962 ~ 50277959 (-)
XLOC_026769 NA coding upstream 191620 50338780 ~ 50341046 (-)
XLOC_026770 NA coding upstream 286391 50433551 ~ 50438278 (-)
XLOC_026771 NA coding upstream 286633 50433793 ~ 50434423 (-)
XLOC_026754 NA non-coding downstream 709381 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 755050 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 1049847 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 1090944 49023900 ~ 49036782 (-)
XLOC_026773 CR812464.1 non-coding upstream 581699 50728859 ~ 50749116 (-)
XLOC_026777 NA non-coding upstream 1112671 51259831 ~ 51273723 (-)

Expression


Co-expression Network