LOC110532718 (fam3a)


Basic Information

Item Value
gene id LOC110532718
gene name fam3a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67020315 ~ 67029099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616821.2
CGCGCAGACTCCAGGCTGACGTCACAGAAAATGAAACGCTCAAAACTAATCAGCAAGATCGCACGCTTGAAGAAATTAAGATAATTTCTCCGTGCTTGTCGTAACTGGAACGATGCAAACACTACAGACGCTGAACTAAGCCTCCCAAATCATATTTCAGTGTCCAAGTTTGTCTTGCCAGGAAAGCACTACTTGCCGGTCTGTCTGCCTTAGCTTCTGAAGAAAATAAATCATGAGATTGGCAGGGCCTCTGCGAGCTGTTGCTGTGCTGCTATTGGTGGGCCTCACCTGGGTGTTAGCCAGCTCCATACTTGGAGGGGACAGCAACTTGGTGGTCAAACACTTCTTCAGTGGGACAAACGAGGAGCCAACAGCTGagCCTAAACCACACAGGTACAAGTGTGGTCTGTCGGCTCCCTGTCCTCAGAAACATCTGGCTTTCCGCATCGTCTCTGGAGCCGCCAACGTCATTGGGCCCAAAATCTGCCTGGAGGATAAGATcCTTGTCAGCAGTGTCAACAACAATGTTGGTAGAGGACTAAACATTGCTTTAGTAAATGGGGTATCTGGAGAGCTCTTGGACACAAAATCATTTGATATGTGGGCAGGAGATGTTACTGACCTGTTGAAGTATCTCCTACCTTTACATGAGGGAACACTTGTGTTTGTAGCTTCCTTTGACGATCCTGCCACAAAATTAAATGACGAGGCTCGTCGTCTGTTTGAGGAGCTGGGTAGCACAGCAGTGAGGGAGCTCACCTTCAGAGACAGCTGGGTGTTTGTAGGAGCCAAGGGCATCGAGAACAAGAGTCCATTCGAACAGcgtaTGAAGAACAGTAAGAACAGTAACAAGTACGAAGGCTGGCCTGAGTCTCTGGAAATGGATGGCTGTGTCCCCCTCCGTTCCCCTTCAGAGGGTTAAACACACTCTGCTtgtatccctcccttcctccactctTCTCAGATGATGCTTATGCCCTACATGGATCCAATGCTTTTAAATACTGGGAGTGTGCAagacaagtgcacactttgggagaagGGTTGGAGAGTTGGAACGCAACCTGTTTCTAAGGACTAGAACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGGCTCTGGTTTTAAGGATTAATGAGACTTGAGTATGGTATTGGTATTGCACGACTACAGTTGGATAAATGATGCTCTGTTACAATATCATGTAACTACAGGGAGGTAAAGACTCTTACAATACTTTTTTTTCCCTTcactttttgttatttttgtcAAGTAACACGTGCTGCAAAGTACATCTTCTCTTTAGTGGACTGACTCACTGTCACAATGCTGGTAGCAAGCTGGCCTGATGGTTGATATGCTAACTTGTTGAAGCAACTGTTTGGACTTGACATTTGAACTAGGAATTGATTTAAGTGTTTGAGGCTCGATGTTCCTGGGAATGACCACGTAGGAGGACATGGATATTTCAGAGACCAAATGTTTGATGCACAGATAAGGGAAAAATGTATGCTggatagaaaaaaagaaaatattaaaGAAGTAATGTCTGTAAAACCCTGCAAATGCACAGGAAGAGGGCAGATAATGCTGCCTATATGAACGGAAATCGCAAACAGAATACAATTAGGATTCACTAGCAACATATTATTGCTGGCTGTTCTAGGAAGGATATTGTATGTTATGATAAATTAAAATGCattaatatatattttgtatgCATAGTTTAATATATTAAATTGTAGATTTCAATCTAGTTGtgctagcctgagtgccagtctgtttgttccATCATGCCAActcgttgtcatgtcaaacattTGGCTTGACAAGGTGGAATGGAGTTGCcagaagcacaaacagatctgggaccaagtGCTAATAACCACCTTTTATGTGAGGGTTACCCTGGGGTCAGATGTGGGGCTACACCAATGCCAtgattactgtatatatgtgaTGACCTTTGTATGCTTGCAATGCTCAGTGATGGAAAAGTACTGGGTAAATGGAGATGTACTGCTTTAGTTCTCTGGCTGAGAATTGTCTGCACCTGCTGACAGTCACACAGCCTCAAGGCCGAGATAGTAGAGTGAGAAACCACAGTCTATACATGTTTTTCTAATTTTAGATACTTTGTATCTAATCCAATGCAACAATGTTAAGATATGATTGACGGTAGGTTGTATAAAGAGTGTTGTCTCTTGTTTCGCCACACAGATCTTTACTATAGAATATTGAGGTATTCTGTGTGTGAaactctgtctgcaattgcatttaATTACTAAATAGTTTTATACCAA
>XM_021616820.2
TGCGCGCAGACTCCAGGCTGACGTCACAGAAAATGAAACGCTCAAAACTAATCAGCAAGATCGCACGCTTGAAGAAATTAAGATAATTTCTCCGTGCTTGTCGTAACTGGAACGATGCAAACACTACAGACGCTGAACTAAGCCTCCCAAATCATATTTCAGTGTCCAAGTTTGTCTTGCCAGGAAAGGTGAATTTTCACGAAGGAAATCTAGATGAGTTTGCCTTGGAATAAATAACACACTACTTGCCGGTCTGTCTGCCTTAGCTTCTGAAGAAAATAAATCATGAGATTGGCAGGGCCTCTGCGAGCTGTTGCTGTGCTGCTATTGGTGGGCCTCACCTGGGTGTTAGCCAGCTCCATACTTGGAGGGGACAGCAACTTGGTGGTCAAACACTTCTTCAGTGGGACAAACGAGGAGCCAACAGCTGagCCTAAACCACACAGGTACAAGTGTGGTCTGTCGGCTCCCTGTCCTCAGAAACATCTGGCTTTCCGCATCGTCTCTGGAGCCGCCAACGTCATTGGGCCCAAAATCTGCCTGGAGGATAAGATcCTTGTCAGCAGTGTCAACAACAATGTTGGTAGAGGACTAAACATTGCTTTAGTAAATGGGGTATCTGGAGAGCTCTTGGACACAAAATCATTTGATATGTGGGCAGGAGATGTTACTGACCTGTTGAAGTATCTCCTACCTTTACATGAGGGAACACTTGTGTTTGTAGCTTCCTTTGACGATCCTGCCACAAAATTAAATGACGAGGCTCGTCGTCTGTTTGAGGAGCTGGGTAGCACAGCAGTGAGGGAGCTCACCTTCAGAGACAGCTGGGTGTTTGTAGGAGCCAAGGGCATCGAGAACAAGAGTCCATTCGAACAGcgtaTGAAGAACAGTAAGAACAGTAACAAGTACGAAGGCTGGCCTGAGTCTCTGGAAATGGATGGCTGTGTCCCCCTCCGTTCCCCTTCAGAGGGTTAAACACACTCTGCTtgtatccctcccttcctccactctTCTCAGATGATGCTTATGCCCTACATGGATCCAATGCTTTTAAATACTGGGAGTGTGCAagacaagtgcacactttgggagaagGGTTGGAGAGTTGGAACGCAACCTGTTTCTAAGGACTAGAACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGGCTCTGGTTTTAAGGATTAATGAGACTTGAGTATGGTATTGGTATTGCACGACTACAGTTGGATAAATGATGCTCTGTTACAATATCATGTAACTACAGGGAGGTAAAGACTCTTACAATACTTTTTTTTCCCTTcactttttgttatttttgtcAAGTAACACGTGCTGCAAAGTACATCTTCTCTTTAGTGGACTGACTCACTGTCACAATGCTGGTAGCAAGCTGGCCTGATGGTTGATATGCTAACTTGTTGAAGCAACTGTTTGGACTTGACATTTGAACTAGGAATTGATTTAAGTGTTTGAGGCTCGATGTTCCTGGGAATGACCACGTAGGAGGACATGGATATTTCAGAGACCAAATGTTTGATGCACAGATAAGGGAAAAATGTATGCTggatagaaaaaaagaaaatattaaaGAAGTAATGTCTGTAAAACCCTGCAAATGCACAGGAAGAGGGCAGATAATGCTGCCTATATGAACGGAAATCGCAAACAGAATACAATTAGGATTCACTAGCAACATATTATTGCTGGCTGTTCTAGGAAGGATATTGTATGTTATGATAAATTAAAATGCattaatatatattttgtatgCATAGTTTAATATATTAAATTGTAGATTTCAATCTAGTTGtgctagcctgagtgccagtctgtttgttccATCATGCCAActcgttgtcatgtcaaacattTGGCTTGACAAGGTGGAATGGAGTTGCcagaagcacaaacagatctgggaccaagtGCTAATAACCACCTTTTATGTGAGGGTTACCCTGGGGTCAGATGTGGGGCTACACCAATGCCAtgattactgtatatatgtgaTGACCTTTGTATGCTTGCAATGCTCAGTGATGGAAAAGTACTGGGTAAATGGAGATGTACTGCTTTAGTTCTCTGGCTGAGAATTGTCTGCACCTGCTGACAGTCACACAGCCTCAAGGCCGAGATAGTAGAGTGAGAAACCACAGTCTATACATGTTTTTCTAATTTTAGATACTTTGTATCTAATCCAATGCAACAATGTTAAGATATGATTGACGGTAGGTTGTATAAAGAGTGTTGTCTCTTGTTTCGCCACACAGATCTTTACTATAGAATATTGAGGTATTCTGTGTGTGAaactctgtctgcaattgcatttaATTACTAAATAGTTTTATACCAA
>XM_021616822.2
CACACTACCAGAGCTTTGAAACGTTGATTTAATTATACTTTCCTGTGACTATATTGTGacaaccctgggtttataagcgaggAAATCGACCCTGCCGCACGAGCGTGCTTTTCGgaacagtcgatagcgcgccggacctcgggctagaaggtcgagggttcgagacctgctccctgctgtttcattacaatattgtCTCACATTCCTACCTGCAAAAGGACCACCCTAAAATGAGTTAACATTTAACTGTATTTAACGGTCTGGCTTTTATTTAACCCTAATTTCTGCCTGAAGTAGAATTCAACGCAATTCCACATCGGGTTGGTTTCCATGTAACTGTAATCTCTGCACATTCACAAGATCTAGCTAGCTTCAGTAGGCCTACTCAAACCACCACAGATAGCCTATCTGATGCAGTTTCCAAGATGGGCACTCACTACTGTTGACTTCTCTCTGCGACTGCTCACTGTGGCTCCAAATACCTTAGGAAACAGAAGAACAGGACAGGGCGTTAGATAACTCAACTTGTGGTTCACGTGGTCGCACTACTTGCCGGTCTGTCTGCCTTAGCTTCTGAAGAAAATAAATCATGAGATTGGCAGGGCCTCTGCGAGCTGTTGCTGTGCTGCTATTGGTGGGCCTCACCTGGGTGTTAGCCAGCTCCATACTTGGAGGGGACAGCAACTTGGTGGTCAAACACTTCTTCAGTGGGACAAACGAGGAGCCAACAGCTGagCCTAAACCACACAGGTACAAGTGTGGTCTGTCGGCTCCCTGTCCTCAGAAACATCTGGCTTTCCGCATCGTCTCTGGAGCCGCCAACGTCATTGGGCCCAAAATCTGCCTGGAGGATAAGATcCTTGTCAGCAGTGTCAACAACAATGTTGGTAGAGGACTAAACATTGCTTTAGTAAATGGGGTATCTGGAGAGCTCTTGGACACAAAATCATTTGATATGTGGGCAGGAGATGTTACTGACCTGTTGAAGTATCTCCTACCTTTACATGAGGGAACACTTGTGTTTGTAGCTTCCTTTGACGATCCTGCCACAAAATTAAATGACGAGGCTCGTCGTCTGTTTGAGGAGCTGGGTAGCACAGCAGTGAGGGAGCTCACCTTCAGAGACAGCTGGGTGTTTGTAGGAGCCAAGGGCATCGAGAACAAGAGTCCATTCGAACAGcgtaTGAAGAACAGTAAGAACAGTAACAAGTACGAAGGCTGGCCTGAGTCTCTGGAAATGGATGGCTGTGTCCCCCTCCGTTCCCCTTCAGAGGGTTAAACACACTCTGCTtgtatccctcccttcctccactctTCTCAGATGATGCTTATGCCCTACATGGATCCAATGCTTTTAAATACTGGGAGTGTGCAagacaagtgcacactttgggagaagGGTTGGAGAGTTGGAACGCAACCTGTTTCTAAGGACTAGAACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGCCTCTGGTTCTAAGGACTAGCACCTTTTGAGAACGAAGGGCTCTGGTTTTAAGGATTAATGAGACTTGAGTATGGTATTGGTATTGCACGACTACAGTTGGATAAATGATGCTCTGTTACAATATCATGTAACTACAGGGAGGTAAAGACTCTTACAATACTTTTTTTTCCCTTcactttttgttatttttgtcAAGTAACACGTGCTGCAAAGTACATCTTCTCTTTAGTGGACTGACTCACTGTCACAATGCTGGTAGCAAGCTGGCCTGATGGTTGATATGCTAACTTGTTGAAGCAACTGTTTGGACTTGACATTTGAACTAGGAATTGATTTAAGTGTTTGAGGCTCGATGTTCCTGGGAATGACCACGTAGGAGGACATGGATATTTCAGAGACCAAATGTTTGATGCACAGATAAGGGAAAAATGTATGCTggatagaaaaaaagaaaatattaaaGAAGTAATGTCTGTAAAACCCTGCAAATGCACAGGAAGAGGGCAGATAATGCTGCCTATATGAACGGAAATCGCAAACAGAATACAATTAGGATTCACTAGCAACATATTATTGCTGGCTGTTCTAGGAAGGATATTGTATGTTATGATAAATTAAAATGCattaatatatattttgtatgCATAGTTTAATATATTAAATTGTAGATTTCAATCTAGTTGtgctagcctgagtgccagtctgtttgttccATCATGCCAActcgttgtcatgtcaaacattTGGCTTGACAAGGTGGAATGGAGTTGCcagaagcacaaacagatctgggaccaagtGCTAATAACCACCTTTTATGTGAGGGTTACCCTGGGGTCAGATGTGGGGCTACACCAATGCCAtgattactgtatatatgtgaTGACCTTTGTATGCTTGCAATGCTCAGTGATGGAAAAGTACTGGGTAAATGGAGATGTACTGCTTTAGTTCTCTGGCTGAGAATTGTCTGCACCTGCTGACAGTCACACAGCCTCAAGGCCGAGATAGTAGAGTGAGAAACCACAGTCTATACATGTTTTTCTAATTTTAGATACTTTGTATCTAATCCAATGCAACAATGTTAAGATATGATTGACGGTAGGTTGTATAAAGAGTGTTGTCTCTTGTTTCGCCACACAGATCTTTACTATAGAATATTGAGGTATTCTGTGTGTGAaactctgtctgcaattgcatttaATTACTAAATAGTTTTATACCAA

Function

symbol description
fam3a Predicted to act upstream of or within negative regulation of gluconeogenesis and regulation of lipid biosynthetic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A).

NR:

description
protein FAM3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616821.2 False 2444 mRNA 0.43 10 67020315 67027668
XM_021616820.2 False 2497 mRNA 0.43 10 67020315 67027670
XM_021616822.2 True 2801 mRNA 0.44 10 67020315 67029099

Neighbor

gene id symbol gene type direction distance location
LOC110532715 LOC106572720 coding downstream 1346 66932925 ~ 67018969 (-)
LOC110532714 LOC106572710 coding downstream 91463 66889894 ~ 66928852 (-)
LOC110531242 LOC100380641 coding downstream 131830 66800041 ~ 66888485 (-)
l1cama LOC106572712 coding downstream 269190 66627920 ~ 66751125 (-)
LOC110531241 LOC106572714 coding downstream 400779 66597200 ~ 66619536 (-)
LOC110531244 LOC106572707 coding upstream 40217 67069316 ~ 67133237 (-)
LOC110532720 LOC106572702 coding upstream 190829 67219928 ~ 67254596 (-)
LOC110532721 LOC106572706 coding upstream 229596 67258695 ~ 67263475 (-)
LOC110532723 LOC106572705 coding upstream 249750 67278849 ~ 67293936 (-)
LOC110532725 LOC106572703 coding upstream 268906 67298005 ~ 67322378 (-)
G833396 NA non-coding downstream 45751 66973726 ~ 66974564 (-)
G833380 NA non-coding downstream 98505 66921017 ~ 66921810 (-)
G833358 NA non-coding downstream 187776 66832055 ~ 66832539 (-)
G833355 NA non-coding downstream 218324 66801467 ~ 66801991 (-)
G833346 ssrd non-coding upstream 16138 67045237 ~ 67050383 (-)
G833353 NA non-coding upstream 22439 67051538 ~ 67051977 (-)
G833432 NA non-coding upstream 27619 67056718 ~ 67056932 (-)
G833435 NA non-coding upstream 35304 67064403 ~ 67065636 (-)
G833436 NA non-coding upstream 37441 67066540 ~ 67067171 (-)
G833029 NA other downstream 431635 66587412 ~ 66588680 (-)
G832991 myl6b other downstream 508749 66506278 ~ 66515999 (-)
LOC110531240 LOC106567037 other downstream 589546 66228457 ~ 66430917 (-)
LOC110532692 LOC106572690 other downstream 872630 66127916 ~ 66147685 (-)
G832503 NA other downstream 984135 66035872 ~ 66036180 (-)
G833521 NA other upstream 150150 67179249 ~ 67185243 (-)
LOC110531246 LOC106572701 other upstream 419352 67327762 ~ 67455661 (-)
LOC110532727 LOC106572699 other upstream 514051 67543067 ~ 67560577 (-)
LOC110531249 LOC106572727 other upstream 999309 68028408 ~ 68079899 (-)
G834676 NA other upstream 1346559 68375658 ~ 68376157 (-)

Expression


Co-expression Network