LOC110531244 (LOC106572707)


Basic Information

Item Value
gene id LOC110531244
gene name LOC106572707
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67069316 ~ 67133237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988772.1
GTAGTCTCTCAGAggtagcagaggagagagagacacacacggagCCTGGCAACTAATGGATTACTCTCAGACTGTTGTGAACTACACAGCAGCCAAATGCCATTAACCACAAGGCAAATTCAGTACTGACATATTGACACACATTTAACTACAGCCTATAACACCCTACAAGCTCTGAACACATTTAGATCACATAACATTTGAGACAGACAGTTCTAACACTGGTCTCTTGATCTACATTAGCGTAAACAGACACACTGATTCAATGAtccctcacacaaacacagaaacaatGGACATGCATGGACTTCACTGTTGAATCAAAGGGACAAAGATGTGAATTGTGGTGAGGATTTGGACACCTTTGTGAAACATCACTGAAGAGGATCACAAGCAAAAGCATGGAAAGTATCTCAGAGAAAACGGGTTGGGATGGATTAGGCCACTCCTCTCTGACATCTGCGACGGCAGGAAGAAACAAcctcacttcctccctcttctccgaCTTCACGTCCCTCAACAGTTCTCATGGAGGCGCAGGGTCCTACTATTGGATTATCCCAGAGAACGCCTCAACCACCACACCCCAAGCCTTACCCCAGCCCAGGGTGAGGGATCTGGGCCTGGCCCGGGCCGAGATAGGGGTGCTGGGCCTGGTACTGGCCCTGACTACCCTGGGAAACGGCTTTGTACTGTGGGTGCTGCTTCGCAGGAGGAAACAAAACGCTCCCATGCACCTGTTCATGGTCAACCTGTGTCTTGCTGACCTGGTGGTGGCGCTGTTCCAGGTACTTCCCCAGCTGGTATGGGACATCACAGGAAGGTTCCAGGGGCCGGATTTTCTGTGTCGCTCAGTAAAGTACCTGCAGATCGTAGGGATGTTCGCGTCCTCCTATATGATCGTTGCCATGACGGTAGATCGGCACTATGCCATCTGCTGCCCACTACAAGCCTACCGTGGTGGGTCTGTGTCACGCTGGAACACCCCTATCATGACGGCCTGGGGCTTGGCCCTACTGCTCTCCATACCACAGTTCTTCATTTTCTCGCGGTCGGAGGTGTCTCCAGAAGAGTTTGAGTGCTGGGGTCACTTCGCTGAGCAGTGGGGGCTCAAGGCCTACATCACCTGGATGACCCTAGCAGTGTTCTTACTGCCAGCACTAATCATCACCGTCTGCCAGATCCGGATCTTCAGAGAGATTCACAACAACATCTATCTGAAGTCAGAGAGGATGGTGTCAGCAGAGCTCAAGAAAAACAATGCTGTCATCTTCCGCTTCCACAGAGTCAAAAAGGAGGACGGTAGAATGACAAGGGagcgggggagaggaggaggaggggggagaggaggaggaggagaaggtgggagaggaggtggaggagaagggggaagaggggggagaggaggaggagggggaagaggagtagGAGAAGGACAGCTTCTGAAGACTATGAACAACAACCCCTCCagctcccccttctcccccctgtCTACAGCTGTGCCCCCATCAGACTGCTATGACTACCCGTCCCCCTGCCCACAGTGCAGCAGCAGTCACAATGAccacacagcagcagcagcagcagcgcaGCAAAACCCCTTCAACATCCCAGATAACCTCCCCGTCCCCTCCAACCCTGTCCTTAGTGACCGAAGGGGCTCCAGTACAGCTGTAGTTCCCAGATCACATGGCTCCCATGGCCCAGTCCCCTCTGGTGGATGTAGTGGTGGTTCAGTGCCTCCTAACAATGGCGGTTGCTACTGCCATGAGTCCTACACCTCCTTCGAGCTCCCCTCCTCCGCCCGGCATGTCCCCTCTCCACGCCCCTCCCTGGAGTACCCTCCCTCACCCCCGCCCCCCTTGGCCCTgactcccccctccatctccaaaGCCATGTCTAAGACGGTGAGGATGACTTTAGTGATAGTGTTGGTGTACACAGTCTGCTGGTCCCCCTTCTTCATCGTCCAGCTGTGGGCCGCCTGGGACCCCAACCCTCCAGACCAAGgcGTGGCGTTCACCATCCTGATGCTGCTGGCCAGTCTGAATTCATGTACCAACCCCTGGATCTACACCTTCTTCAGCAGCTCTGTGTCCAGGGAGCTACAGGCCCTGTTACGCTGCAGACCAAGAACCCTGCGCAGGGGCTCCATACCTGACGactccaccaccacacacacctccaccaccacacacacctccaccaccaAGGACAGCctctactgacacacacacgtacggtaccagtcaaaagtttggacacacctactcattcaag

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: vasopressin V2 receptor-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988772.1 True 2280 mRNA 0.55 6 67069316 67133237

Neighbor

gene id symbol gene type direction distance location
LOC110532718 fam3a coding downstream 40217 67020315 ~ 67029099 (-)
LOC110532715 LOC106572720 coding downstream 50347 66932925 ~ 67018969 (-)
LOC110532714 LOC106572710 coding downstream 140464 66889894 ~ 66928852 (-)
LOC110531242 LOC100380641 coding downstream 180831 66800041 ~ 66888485 (-)
l1cama LOC106572712 coding downstream 318191 66627920 ~ 66751125 (-)
LOC110532720 LOC106572702 coding upstream 86691 67219928 ~ 67254596 (-)
LOC110532721 LOC106572706 coding upstream 125458 67258695 ~ 67263475 (-)
LOC110532723 LOC106572705 coding upstream 145612 67278849 ~ 67293936 (-)
LOC110532725 LOC106572703 coding upstream 164768 67298005 ~ 67322378 (-)
LOC110531246 LOC106572701 coding upstream 194525 67327762 ~ 67455661 (-)
G833436 NA non-coding downstream 2145 67066540 ~ 67067171 (-)
G833435 NA non-coding downstream 3680 67064403 ~ 67065636 (-)
G833432 NA non-coding downstream 12384 67056718 ~ 67056932 (-)
G833353 NA non-coding downstream 17339 67051538 ~ 67051977 (-)
G833346 ssrd non-coding downstream 18933 67045237 ~ 67050383 (-)
G833490 NA non-coding upstream 20098 67153335 ~ 67153552 (-)
G833531 NA non-coding upstream 57749 67190986 ~ 67191228 (-)
G833699 NA non-coding upstream 76421 67209658 ~ 67210042 (-)
G833700 LOC107756720 non-coding upstream 79972 67213209 ~ 67213959 (-)
G833702 NA non-coding upstream 83165 67216402 ~ 67216671 (-)
G833029 NA other downstream 480636 66587412 ~ 66588680 (-)
G832991 myl6b other downstream 557750 66506278 ~ 66515999 (-)
LOC110531240 LOC106567037 other downstream 638547 66228457 ~ 66430917 (-)
LOC110532692 LOC106572690 other downstream 921631 66127916 ~ 66147685 (-)
G832503 NA other downstream 1033136 66035872 ~ 66036180 (-)
G833521 NA other upstream 46012 67179249 ~ 67185243 (-)
LOC110532727 LOC106572699 other upstream 409913 67543067 ~ 67560577 (-)
LOC110531249 LOC106572727 other upstream 895171 68028408 ~ 68079899 (-)
G834676 NA other upstream 1242421 68375658 ~ 68376157 (-)

Expression


Co-expression Network