LOC110532722 (LOC106572704)


Basic Information

Item Value
gene id LOC110532722
gene name LOC106572704
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67263564 ~ 67278303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988778.1
CTGTGTTACCTGGCTCACGCAGGATGAGCTACCataaatcaagtgcacctatagtCCACACAGTATTACGTTGATATTTTTTTAATGGTAATTTAAGTCAACATGATTAGGCAACTTCTCAGTTCAATTCAAGTTCATTCAGTTTAGTCTATAAAGAGTAGAGTTGGCCAAAAAAACTAAACAGGCTTTTGAAATGTAAGATATTTCATACAGAGCAGTTCAAAGAGTCAAAGGAATCCAATATTTTGGCATGACAGGATCTTATGCTAATGACCTGCAACGTGAGTAGTAGCAGCCAATCAGAGAGTAGCATGCAAATATTAACGACAGGTGGGAGAGGGATATAAGGAAACCAAAATATTTTTAGAGATGAAGCCTATCTGTCACTGACAAGCGCGTTAACCTAAAGACAGGGACTTTACAGATACAAAAAAGTTTCTCATTAATCttatcagacctttatggtattTAAACAACCCTTTAAGATATTGTTTTCAGAGTGGAGCTTGTATCTGGAGAGTGTATAATTTTAATATGCGGTAATATTGAATTATTTGAATCATTTCTAAAATAAATTGTTCTTCGGTTGCCTACATTCTTCTGTGATAGTGAGATAGAGAACTACAATCCTGTCTATCTATACTATAGACGTTTGTAGAGATACATATAGTATGGATGTAGATCTAGTACAGTTGGAGTCCAGTCTATGGATTGGTAAGAAACGTTACCGGGCAGCCCTTACCGAATGGCACCTCAACTGGACTGAGCTCGATAAGAAGAACCGTGACAAGACCGTTTCAGTACCAGTGTCGGAGATTGTTGCTGTGGAGGAGGGGCATGTGGAGGTTCTGCCCCAGAGGTCAGTTTCtgaagacacagacagagacttcACAGTGTTCTATGTGAAGCGTAGCAGCAATGGTAGTTCCTATGGGTTGCTATGGCGCCTGGGCAGGACCCAGTTCAGCTGTCCCAGCAGGGACCTCAGAGACCAATGGATGACCCAGCTGAGGATTGCCCTCAAAACACACAgccCCTCTCGTCCTCACAGGTTGTTGGTGTTCATCAACCCGTTCGGAGGAAAGAAACAAGGGAGGGAGATCTATCACTCTCTAGTGGCCCCACTATTTGAGCTGGCAGGGGTCAGCTCTCATGTTTTAGTGACAGAGCGGGCCAACCAGGCGAGAGACCACATACTGAAGAAAGACCTGACTGGTTTCGATGGTGTGGTATGTGTGGGCGGGGATGGAATGTTCAGTGAGCTGCTGCATGGTGTGATTGGCCGAACACAGCAGGAGGCGGGGTTATCGGAGCATGACCCCTCCCTACAGTCATGTGACCTTCACATTGGCATCATTCCTGCAGGCTCCACAGACTGCGTGTGTTTTGCCACTGTGGGAGTCAATGACCCAGTGACCTCTGCACTGCACATTATCATTGGAGACTCTCAGCCTCTGGACGTGTGTTCCGTCCACCACCGCTCGTCTCTGGTGCGTTACTCTGTGTCTCTGGTAGGATACGGGTTCTATGGAGACGTGCTGGCTGAAAGTGAGAGACACCGCTGGATGGGGCCTCTCCGATATGACTATTCAGGTGCTATGGTGTACCTGAGTAACAGGAGCTATGCAGGCCTAGTTCAGTACCTACCAGCAGACCCCCAACTCTCCAACCCCAGGGACAACACACGCTGCCTCTCTGGGTGCAGTGTGTGTTCTAAGAGCACAGAGAGACTGTTCCCCCACTCTCCAGATGCTAGTTCCAACTACATCTCCCACTTCAGTCAGTTCAGCAGCGACTCAGAGGGTGATTGGGTGAGTGTGGAGGGCCGGTTCAAGGCTGTGTCCCTCACCTGTATGTCCAGCTCCTGTCCTCGCAGTCCCCTGGGCCTGTCCCCCTCAGCACATCTGGCCGATGGGACAGGTGACCTCATCATTGTACGGGACACACACCCCCTAGGGTTCCTCACCTTCCTACACAGACACACCAGCACACAGGACCagTTTGACCTGCCCTTCGTGGATGTCCACCGCGTGAAGGCAGTACGTTTCTCTCTCCCACCCGGAgaaaaggaggatgaggatgaagagagggagacagtaaaTGGTGGAGGGATGGCGGAAGAGGGAGCGAGAACAAGCCGGAGCGGTTCCCAACATCACCtggtagaaagaggagaggagcgagggatggCGAATGACAGGAGGAAGAAAGACTTGTGTGGCCTGTGCTGCAGTAAGCCTCCTTCAGTGTCTGTGTGGAACTGTGACGGAGAAATACTTCCTCACACTGAGATCCTCTGCAGggtTCATGGTCAGCTGGTGCGTTTGTATGCCCGGGGCATGGAGGACGGATCAGCCACGCCCACCAGGAAGTGAACCGTGTTAGGGTCCATCACACTACTGACTGAGGGAGGCCGTGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCCGTGGTAGGGTCCGTTCACACTACTGACTGAGGAAGGCCGTGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCCGTGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCCGTGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCGGTGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCGGAGGTAGGGTCCTTTCACACTACTGACTGAGGGAGGCGGAGGTAGGGTCCTTTCACACTACTGACTGAGGGAGGCGGAGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCGGTGGTAGGGTCCGTTCACACTACTGACTGAGGTAGGCGGAGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCGGAGGTAGGGTCCGTTCACACTACTGACTGAGGGAGGCGGAGGTAGAGTTCGTTCACACTACTGACTGATGGAGGCAGAGGTAGGGTCCGTTCACACTACTTTCAGGTAAAAATAATGCCAGAAAAGAAAACATGATTCTAATCAATCATTCTGCCAGCTAGGACCAATGAAAtggctctctctctggtgtaGTTTTTTTATAGAGTGAACGGAGCCTTACTGTGATACTGAGATGTATCACAACTGAAGAAGGCTGTATTACTGTACGAACCTCATGTAGGCTCAATGACAACGTATCAGTTAGTAGGATGTCTGTGGAAAGACTTATTTTTCTGACCTGTGACTATCAACAGAGCCTTACATTTTACATACCTGATGAAATGGCTACTGTAACTAACAGTAGGGTCAACATACAAGTTAGTGGGACAACGGTCATGAATGACTTTGGAAGTAGGTGTGACTGAACGTAACACACTACCCAAAAGAGCCTTCCATTTCACTTCATCTGCTTTCTCTCTTAACCAAATCATTCCTGAATATTATAAGTCTTTAGATGGAGGTTTGAGGTAATTCAAGGAATgtacactgagtgttcaaaacattaagaacacctgcactTTTCAtgacaggtgaatccaggtgaaggttatgatccccttattgatgtcacttgttaaatccacttaaaatcagtgtagatgaaggggaggagtccggttaaagaaggat

Function

NR:

description
ceramide kinase-like

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988778.1 True 3562 mRNA 0.49 13 67263564 67278303

Neighbor

gene id symbol gene type direction distance location
LOC110532719 ssrd coding upstream 213679 67045197 ~ 67049885 (+)
LOC110532716 LOC106572708 coding upstream 221470 67028029 ~ 67042094 (+)
LOC118966099 NA coding upstream 637739 66615300 ~ 66628653 (+)
LOC110532711 LOC106572715 coding upstream 669979 66582815 ~ 66593585 (+)
LOC110532709 myl6b coding upstream 747562 66506476 ~ 66516002 (+)
LOC110532726 LOC106572718 coding downstream 202049 67480352 ~ 67580588 (+)
LOC110532729 LOC106572697 coding downstream 329370 67607673 ~ 67618114 (+)
tebp tebp coding downstream 344120 67622423 ~ 67625977 (+)
LOC110532731 LOC106572722 coding downstream 439874 67718177 ~ 67755296 (+)
LOC110533034 LOC106572723 coding downstream 490037 67768340 ~ 67772836 (+)
G833573 LOC107696956 non-coding upstream 2464 67260207 ~ 67261100 (+)
G833571 NA non-coding upstream 4003 67258740 ~ 67259561 (+)
G833569 NA non-coding upstream 5441 67257923 ~ 67258123 (+)
G833540 NA non-coding upstream 50958 67212328 ~ 67212606 (+)
G833516 NA non-coding upstream 81265 67181108 ~ 67182299 (+)
G833582 NA non-coding downstream 17656 67295959 ~ 67298789 (+)
G833588 NA non-coding downstream 28550 67306853 ~ 67307607 (+)
G833600 NA non-coding downstream 46036 67324339 ~ 67327959 (+)
G833606 adcy6 non-coding downstream 57134 67335437 ~ 67336202 (+)
G833676 NA non-coding downstream 160612 67438915 ~ 67439689 (+)
G833541 NA other upstream 49680 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 329077 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 441925 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 503891 66759278 ~ 66759673 (+)
LOC110532701 LOC106572669 other upstream 1462733 65754497 ~ 65801814 (+)
G833906 LOC100194703 other downstream 342575 67620878 ~ 67621366 (+)
G834099 NA other downstream 770610 68048913 ~ 68049222 (+)
fance fance other downstream 938775 68213202 ~ 68218960 (+)
G834228 NA other downstream 989734 68268037 ~ 68268408 (+)
G834235 NA other downstream 1008912 68287215 ~ 68288525 (+)

Expression


Co-expression Network