LOC110532726 (LOC106572718)


Basic Information

Item Value
gene id LOC110532726
gene name LOC106572718
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67480352 ~ 67580588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988785.1
gcgagagagagagagagagagagagagagaaagaaagagagcgagggagagagcactCTTCCTACCTTCAACTGAggtTCAGCTGATTCCTACACTAGTAGACCCTCAGATTCCGACGTGTCCCTGGAGGACGACCCGGAGGCGTCTCGGCTAGAAGCCGAGCGCCAGGCCCAACTGCAGCTGGAGAGAGCCAAGTCAAAACCCGTAGCATTTGCAGTGAAGACCAACGTGAGCTACTGTGGTGCTCTAGATGCTGACTGTCCTGTCCAAGGTGCTGCTATCAACTTTGAAACCAAAGATTTTCTACACATAAAAGAGAAATACAGCAATGACTGGTGGATTGGTCGGCTGGTGAAGGAAGGGGCAGACATAACTTTCATCCCCAGCCCGGTGAAACTGGAGGCCATGCGGATcaaacaggaacagaaacaggcCCAGAGGAAAGCGGCGAACTCATCGTCGGGTTGGAGATCCACACCACCTAGTGCAGACAGAGCATCTCCCACCCTATGATGTTGTTCCTTCCATGAGGCCGGTGGTGTTGGTGGGGCCGTCACTGAAAGGCTATGAGgTAACAGACATGATGCAGAAGGCCCTGTTTGACTTCCTGAAACACAGGTTTGATGGAAGAATCTCTATCACGCGGGTGACTGCTGATCTGTCATTGGCCAAAAGGTCTGTATTGAACAAGAAGGCTATCATGGAGAGGTCCAACACACGCTCCAGTCTTGCTGAGGTCCAGAGTGAGATTGAGAGGATTTTTGAGCTGGCTAAGACTCTACAGCTCGTAGTTCTGGACGCAGACACTATCAACCACCCAGCACAGCTCCTCAAAACATCCCTGGCTCCTATCATCATTTACGTTAAGGTGTCCTCTCCAAAGgTTCTTCAGAGGCTCATTAAATCTCGGGGGAAATCTCAAAGTAAACACCTCAATGTACAGATGATGGCAGGGGACAAACTAGCACAGTGTCCACCCgagatgtttgatgtgatcCTGGATGAGAACCAGCTGGAAGATGCATGTGAACACCTAGCAGAATACCTGGACATCTACTGGCGCGCCACTCACCTGCCCTGCTCCGCCCCCCTCAACCCCCTATTGGACCAGAGCGAGGTCACCCCGCCCTCCGCTAACTCCAGCCAACAGTTCTCCGAGACTCAAGAGTTAATAGAATGATCACTCCTTAGCTACCACAGGTCTGGATGTGGTAAAGAGACCAATCCAACTCGACCAAAATCCCATGTCAACGCCATTCAGAATCTCCTCATAGCCCTCCATTAAaaattagcctacatttaggctattaTTTATATGTGTATTTGACACTATTTTGGAGTGAAAATCACATTAAaatgcttgtatggatgtcaa
>XM_021616836.2
CCGTAGCATTTGCAGTGAAGACCAACGTGAGCTACTGTGGTGCTCTAGATGCTGACTGTCCTGTCCAAGGTGCTGCTATCAACTTTGAAACCAAAGATTTTCTACACATAAAAGAGAAATACAGCAATGACTGGTGGATTGGTCGGCTGGTGAAGGAAGGGGCAGACATAACTTTCATCCCCAGCCCGGTGAAACTGGAGGCCATGCGGATcaaacaggaacagaaacaggcCCAGAGGAAAGCGGCGAACTCATCGTCGGGTTGGAGATCCACACCACCTAGTGCAGCCAAACAGAAGCAGAAGCAGACAGAGCATCTCCCACCCTATGATGTTGTTCCTTCCATGAGGCCGGTGGTGTTGGTGGGGCCGTCACTGAAAGGCTATGAGgTAACAGACATGATGCAGAAGGCCCTGTTTGACTTCCTGAAACACAGGTTTGATGGAAGAATCTCTATCACGCGGGTGACTGCTGATCTGTCATTGGCCAAAAGGTCTGTATTGAACAAGAAGGCTATCATGGAGAGGTCCAACACACGCTCCAGTCTTGCTGAGGTCCAGAGTGAGATTGAGAGGATTTTTGAGCTGGCTAAGACTCTACAGCTCGTAGTTCTGGACGCAGACACTATCAACCACCCAGCACAGCTCCTCAAAACATCCCTGGCTCCTATCATCATTTACGTTAAGGTGTCCTCTCCAAAGgTTCTTCAGAGGCTCATTAAATCTCGGGGGAAATCTCAAAGTAAACACCTCAATGTACAGATGATGGCAGGGGACAAACTAGCACAGTGTCCACCCgagatgtttgatgtgatcCTGGATGAGAACCAGCTGGAAGATGCATGTGAACACCTAGCAGAATACCTGGACATCTACTGGCGCGCCACTCACCTGCCCTGCTCCGCCCCCCTCAACCCCCTATTGGACCAGAGCGAGGTCACCCCGCCCTCCGCTAACTCCAGCCAACAGTTCTCCGAGACTCAAGAGTTAATAGAATGATCACTCCTTAGCTACCACAGGTCTGGGTGAGTAGGACCCCCTCACTATCCCTCCCTAACccttttctctgttctctgttctattctattctactctatttgaTTCTAAAAGGAACAGCCACTGCTGTGGGTCAGATGTAAGGGGTCAGAATTTAGAGGTCACCGGGGGTCACAGGGGGAGCAGGGGTTGGCAAGGAATTCCTGTCTGGATAGGCACCATCTCCACAGGCCCGCCCCTCTCTAttctggagagagggaaggagggcaaCAGGGGGGCAGGGCAGCTtgtatctgagagagagagagagagagagagagagagagagagagagagagagagaccctaacGAAGACGGACCCCCAcgctgccccctgctggagagtCCTCCCAGAGTGCCTTGACTACTCCCAGCGTGGCGTGATGCGTCTCGTCACTGCAACCGGACCGTCATCTTGTCCTGGACAAAACACTACCCTTACACCCCCACCCGAACCCTCCCTAGCAGCACTCAAAACCACTTAGCGGTACCACCTAAACagttacactactgttcaaa
>TU948302
caaggacatttctaagtgaccccaaacttttgaacagtagtgtaggtACAACCCAAACTGTCTCCAGACACAGATGGGTTGGTTCAGTTCACATGCTGAAACAACAAGTGTAATGTAATGCTTATTAGTGACTGTAGCATAGTGTGGAATAGGTCACAGTGTCTTCCGTCACTACAATATTCTGTAACCATTGTATTCACATGTGTTCAGGCACCTGGGCTGGTACACACTATGTAATGACCTTACCTTTCTCTTTCTTTATAGATGTGGTAAAGAGACCAATCCAACTCGACCAAAATCCCATGTCAACGCCATTCAGAATCTCCTCATAGCCCTCCATTAAaaattagcctacatttaggctattaTTTATATGTGTATTTGACACTATTTTGGAGTGAAAATCACATTAAaatgcttgtatggatgtcaaccccaatgCAGGTTCATGTCATCATCACTAATCAACTGATTTACACTTAAAAACGGCTTCAAGGACCACCACCGATTTCTATATGCTAGCTACGCTACCAGCTTCTACGAACAGAAATTAGCATTTAACAGACTTTTTTATAATCACGAAAAGGACTATTTCTAAATATTATGCAGCGAAAACAGTAGCaaccacattgtgggcctgttaGAACACAAAGATCTTGACAGATGTGAAGAATATCCACTTTGTATAATCTGATTTTTAGAATGTGTTTTTAGATGGTATCCTTGTTGTTTCCCcgcagtctgcgttccattgATCTCTTAACGGCATATATTGCTCGCTTTCGCTTGCTTGATAACTTGTTTTTTTCCCTGgtctgttttgtattgtgtttccGTAGCTAACTGTTTTTTGTAGGTGTTATATAGTGACACAGAGGAATCAAACATATATGAATCAGAGCACATCAAAGCACATTATCAAAGCACAAACTTGCACACTGTCATCTACAACGCTTATGTATATTTATCATGTATCTACATTATGGATCTACAGAAGATCAGAGTAGTTTTGCCACTGAATCCACCAATCAGATCGCAGACAGGGACCGAGATAGGAGGAGTCAGACCAGACACGTTTGCTTGTCTGTCTGAaatgtatatatacatttttgaaTGACCAAAAAGATGATCAGTACTTGAGGAGATACGTTAACCATTTGTAGGGAAGTTCTAAACTTTTAGGCAACACACGAACACTCTCCCTAAAACCAGGTCCAGACTGTCCAGAATGTATCACTGTGCAgcctacagtacaggactgtagctctcctCCTACTGGCAGGATCCCGTCTGATCTGTTTCCTCAGACACTACATCACACTCAATGTAGGCTATTTGAGCAGTTGATTAGCACTTCTTATAACAAGATCAGTTAAAATTCTGATAATTAATTCAGTTAAAGTCCCATAAATTATGCTTCCACTACAATTCAGTTCTTACGAATTATGATGTAAATCTAGCCATTCCACTGTAGTCACAAGGACTGTGAcaaagcagagaggaagaggaagagagaggcccaACTCGGCAGCAAATcggtctccctccagcaggtggcgtttttATGTTGTTTCACCCATCAAGCAATGAGTTTTTggatggaggtcaatgagagagtgttgaatttggtcaacaaaataATTTATGGGTTATTTGCTacgtgaggtttatttgatcaaatagaagtTTTGTAATGCTTAAATTGTTACTAGTGCACTGATATAAGTtggaaaaaacactttatatcggagttgtctcgaaatggctatgcatattcttggcatgaggctagtagcatagcgtctctctccattgaatacaggaGGTTGATGTCAACAACCCTCATTGAATATTCAAAAAATTATTAGAATAATGAGATGTATcaaccaatccaaagaaaggataggcgGGAGCTAGACAGGCCGCTgtgccgctttgtggacaacgactcccattgttagggaggAGAGACGTatatcttgtcagtatatccataatcCTTGGCCAAAGGGTGTCCATAGCACTTCCTGTCATTCATGTGTGTGGAGCGAGGGACCTCTAGTGGTGGGCTTGTGTCACGACACCTGAAGTCACATAGTATTCAATGTTACCCAATTGTAATACCATAATAGAATGTCAACTCATAATGAATCTGAATATAATAGGTAATCTATTCACTATGGATAGCTCTCTGCTTGAGGAAAAAGGAGAATGATGATGTGTTGACCATATGTAGATCAAACACCATTTGGATGAGCTTCCAACCTTTACCAATTCGTAACACATTGTAACATGTTCGTAACATATTGTTACGAATTGGAATTCgcaacatatcatacgaatttcAGGATTATAATTTCAATTAATCaagcaaatgtatttataaagcccttcttacatcagctgatgtcacaaagtgctgtacagaaacccagtctaaaaccctaaacagcaagaaatgcaggtgtagaagcacggttgcTAGGAAAAAaaacctagaaaggccaaaacctatgaagaaacctagagaggaaccaggctatgatgggtggccagtcctcttctggctgtgccgggtggaaattataacagaacttggccaagatgttcaaatgttcatagatgaccagcagggtcaaataataataatcacagtggttgtagagggtgcaacaggtcagcacctcaggagtaaatgtcagttggcttttcatagccgatcattcagtgtatctctaccgcacctgctgtctctagagagttgaaaacagcaggtctgggacaaggtagcacgtctggtgaacaggtcagggttccatagccgcaggcagaacagttgaaactggagcagcagcatggccaggtggactggggacagcaaggagtcatcaggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988785.1 False 1375 mRNA 0.50 13 67480352 67517997
XM_021616836.2 False 1554 mRNA 0.52 11 67510206 67516782
TU948302 True 2894 lncRNA 0.40 3 67517565 67580588

Neighbor

gene id symbol gene type direction distance location
LOC110532722 LOC106572704 coding upstream 202049 67263564 ~ 67278303 (+)
LOC110532719 ssrd coding upstream 430467 67045197 ~ 67049885 (+)
LOC110532716 LOC106572708 coding upstream 438258 67028029 ~ 67042094 (+)
LOC118966099 NA coding upstream 854527 66615300 ~ 66628653 (+)
LOC110532711 LOC106572715 coding upstream 886767 66582815 ~ 66593585 (+)
LOC110532729 LOC106572697 coding downstream 89676 67607673 ~ 67618114 (+)
tebp tebp coding downstream 104426 67622423 ~ 67625977 (+)
LOC110532731 LOC106572722 coding downstream 200180 67718177 ~ 67755296 (+)
LOC110533034 LOC106572723 coding downstream 250343 67768340 ~ 67772836 (+)
LOC110533035 LOC106572734 coding downstream 387034 67905031 ~ 67911226 (+)
G833843 NA non-coding upstream 1203 67478881 ~ 67479149 (+)
G833842 NA non-coding upstream 3267 67476821 ~ 67477085 (+)
G833836 NA non-coding upstream 13473 67466667 ~ 67466879 (+)
G833676 NA non-coding upstream 40663 67438915 ~ 67439689 (+)
G833606 adcy6 non-coding upstream 144150 67335437 ~ 67336202 (+)
G833837 NA non-coding downstream 2393 67520390 ~ 67522734 (+)
G833868 NA non-coding downstream 22011 67540008 ~ 67599092 (+)
G833880 NA non-coding downstream 37384 67555381 ~ 67555829 (+)
G833888 NA non-coding downstream 67287 67585284 ~ 67586292 (+)
G833905 NA non-coding downstream 102315 67620312 ~ 67620528 (+)
G833541 NA other upstream 266468 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 545865 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 658713 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 720679 66759278 ~ 66759673 (+)
LOC110532701 LOC106572669 other upstream 1679521 65754497 ~ 65801814 (+)
G833906 LOC100194703 other downstream 102881 67620878 ~ 67621366 (+)
G834099 NA other downstream 530916 68048913 ~ 68049222 (+)
fance fance other downstream 699081 68213202 ~ 68218960 (+)
G834228 NA other downstream 750040 68268037 ~ 68268408 (+)
G834235 NA other downstream 769218 68287215 ~ 68288525 (+)
G833908 LOC106572695 non-coding downstream 51784 67632372 ~ 67633330 (+)
G833910 NA non-coding downstream 55660 67636248 ~ 67636799 (+)
G833918 NA non-coding downstream 86468 67667056 ~ 67667801 (+)

Expression


Co-expression Network