XLOC_026768 (arl16)


Basic Information

Item Value
gene id XLOC_026768
gene name arl16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50271962 ~ 50277959 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052096
ATCTGTTTAGGTGATGTTTACAAGCCAGTCGCATTAAAACAGGAGTCATCCGCGCCTTTATTTTGATTAAAGCACTGCAGCTCGTGAACATGTGCTTATTGCTCGGTGCAACTGGAGTAGGAAAAACGCTTCTACTGAAGCGACTACAGAAGCTGTGCCAGATGGATCCATGCGCAGATTTGGGCGAAGCGCCAGTCACTCTGCCGACGgtcgGCACCAACCTCACTGACCTCATattaaagaagaagaagaagaagataacAGTGCGAGAATTGGGAGGCTGTATGGGACCCATTTGGCCAAAATACTACTTGGATTGCAAATCTGTTATTTTTGTGGTGGACTGTGTGAACGTTGAACAGATTTCTTCATCCTGCGTCCAGCTGCTATCTGTTCTCTCTGCGGAGTCTCTGCTCTCTGCTGCTGTGCTTATACTCTTCAACAAGAGGGATCTTCTATGCAGTATGTCTCTGGTTGAGCTGAAATCACTGTTCAGGATGGATGACATCATCAAAAGTGCACCTCAATTTGTCACCATACTAGAGGTCAGTGCTCGCTCCGGGCAGGGCCTTCAGGACGTGCTCCACTGGCTTTCCTCAAACCTCTCTGACACGAGTGATTAGCATGAAGAAAACAGTGGGATTAACATAACAGGACACAGTAGATATCTGACAAATGTGATGTGAAGATGATTTACAGTGTAACTGCACTCAGCCACGGCACATCCAAACACATTAGTTTGAGAAACTGTGTCTAActgaggtgacgcagtggcgcagtaggtagttctgtcgcctcacagcaaaaaggtcgctggttcgagcctgaataaaaaatgcatttgtgttCTTTGGACTATTTTGAGTTTGGAGTTAAGCATGAGCAGGTGAACATTATATAAGCCGACAGTATACATTTGCCACTGCGTAGTGTATTTGTACTTCTGTATTTCTGCATCATGGCCCTTTCtacaatcaacaaacaaaacagaccTTTCTTTACCCATCTGAAGAAGAGTGTCAGCTCCTTGTACTTCAGCCCATCCAGCTTGTTCAAGCTTTCCAAAATGGACAGTAAAGGACATTAAGCTGTTTGTCGGTTATTAAGCAAAAGCAGATGTGACTATTGTTTTGTAATTTCTGTTTTTCTTCTTAATGCTTAGAGTCTTTGAAGATATAGTACGCTAGCATATTTACAATATGATCACGTTGCTTATCATGACTGATAACCATTTCTACTTTAATAAGTGTAGATTGTTGTGGACTATGTATTGTTATCTATATCAATAAAGCTGTTTGAGCTGT
>TCONS_00052097
ATCTGTTTAGGTGATGTTTACAAGCCAGTCGCATTAAAACAGGAGTCATCCGCGCCTTTATTTTGATTAAAGCACTGCAGCTCGTGAACATGTGCTTATTGCTCGGTGCAACTGGAGTAGGAAAAACGCTTCTACTGAAGCGACTACAGAAGCTGTGCCAGATGGATCCATGCGCAGATTTGGGCGAAGCGCCAGTCACTCTGCCGACGgtcgGCACCAACCTCACTGACCTCATattaaagaagaagaagaagaagataacAGTGCGAGAATTGGGAGGCTGTATGGGACCCATTTGGCCAAAATACTACTTGGATTGCAAATCTGTTATTTTTGTGGTGGACTGTGTGAACGTTGAACAGATTTCTTCATCCTGCGTCCAGCTGCTATCTGTTCTCTCTGCGGAGTCTCTGCTCTCTGCTGCTGTGCTTATACTCTTCAACAAGAGGGATCTTCTATGCAGTATGTCTCTGGTTGAGCTGAAATCACTGTTCAGGATGGATGACATCATCAAAAGTGCACCTCAATTTGTCACCATACTAGAGGTCAGTGCTCGCTCCGGGCAGGGCCTTCAGGACGTGCTCCACTGGCTTTCCTCAAACCTCTCTGACACGAGTGATTAGCATGAAGAAAACAGTGGGATTAACATAACAGGACACAGTAGATATCTGACAAATGTGATGTGAAGATGATTTACAGTGTAACTGCACTCAGCCACGGCACATCCAAACACATTAGTTTGAGAAACTGTGTCTAActgaggtgacgcagtggcgcagtaggtagttctgtcgcctcacagcaaaaaggtcgctggttcgagcctcggctcagtcagcgtttctgtgtggagtttgcctgctCTCCCTCCATTCGCTAAGTTtcctcgggtgctccggtttcccccacagtccaaagacatgaggttcaggtgaattgggtaggcaaaaattgtccgtagtgtatgagtgtgtgtgtgaatgtgtatgtttcccagggatgggttgcggctggaagggcatctgctgcgtaaaaacgtactggataagttggcagttaattccgctgtggagaccctggattaacaaagggactaagctgacaagaaaatgaatgaatgtgtctaACTGATCGACTGGTAATGGACACATGGATAATTTCAGTGC
>TCONS_00052098
TACAAGCCAGTCGCATTAAAACAGGAGTCATCCGCGCCTTTATTTTGATTAAAGCACTGCAGCTCGTGAACATGTGCTTATTGCTCGGTGCAACTGGAGTAGGAAAAACGCTTCTACTGAAGCGACTACAGAATATCCTTCAGCAGCTCTTTACATTAGACAGACTGCATGTTGTGTTCCTCTAAAtctgattgtttgtttgtgtaatttCACTTTTGTGGTTTTATATTTTACGATGTGcgtttttaaaaaacaagttaACTGCACCATTTAATGTTCATGAATATTTCTTTATCTGGACTAACAGCTGTGCCAGATGGATCCATGCGCAGATTTGGGCGAAGCGCCAGTCACTCTGCCGACGgtcgGCACCAACCTCACTGACCTCATattaaagaagaagaagaagaagataacAGTGCGAGAATTGGGAGGCTGTATGGGACCCATTTGGCCAAAATACTACTTGGATTGCAAATCTGTTATTTTTGTGGTGGACTGTGTGAACGTTGAACAGATTTCTTCATCCTGCGTCCAGCTGCTATCTGTTCTCTCTGCGGAGTCTCTGCTCTCTGCTGCTGTGCTTATACTCTTCAACAAGAGGGATCTTCTATGCAGTATGTCTCTGGTTGAGCTGAAATCACTGTTCAGGATGGATGACATCATCAAAAGTGCACCTCAATTTGTCACCATACTAGAGGTCAGTGCTCGCTCCGGGCAGGGCCTTCAGGACGTGC

Function

symbol description
arl16 Predicted to enable GTP binding activity. Orthologous to human ARL16 (ADP ribosylation factor like GTPase 16).

GO:

id name namespace
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-114 Predicted to enable GTP binding activity. Orthologous to human ARL16 (ADP ribosylation factor like GTPase 16).

Ensembl:

ensembl_id ENSDARG00000059498

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052096 False 1304 mRNA 0.43 6 50271962 50277959
TCONS_00052097 False 1166 mRNA 0.47 5 50272572 50277959
TCONS_00052098 True 737 lncRNA 0.44 4 50273156 50277941

Neighbor

gene id symbol gene type direction distance location
XLOC_026767 rasd2 coding downstream 94304 50175166 ~ 50177658 (-)
XLOC_026766 btr02 coding downstream 124802 50127726 ~ 50147160 (-)
XLOC_026765 cldnk coding downstream 144294 50123507 ~ 50127668 (-)
XLOC_026764 hgs coding downstream 153822 50076793 ~ 50118140 (-)
XLOC_026763 mrpl12 coding downstream 205434 50054187 ~ 50066528 (-)
XLOC_026769 NA coding upstream 60821 50338780 ~ 50341046 (-)
XLOC_026770 NA coding upstream 155592 50433551 ~ 50438278 (-)
XLOC_026771 NA coding upstream 155834 50433793 ~ 50434423 (-)
XLOC_026772 rcvrna coding upstream 163485 50441444 ~ 50443607 (-)
XLOC_026773 CR812464.1 coding upstream 450900 50728859 ~ 50749116 (-)
XLOC_026761 NA non-coding downstream 334227 49934636 ~ 49937735 (-)
XLOC_026754 NA non-coding downstream 853617 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 899286 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 1194083 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 1235180 49023900 ~ 49036782 (-)
XLOC_026777 NA non-coding upstream 981872 51259831 ~ 51273723 (-)

Expression


Co-expression Network