LOC110532728 (LOC106572698)


Basic Information

Item Value
gene id LOC110532728
gene name LOC106572698
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67587799 ~ 67603010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988788.1
TTGAGCTGGACCGACATTGCAGAAGACTACCGACTGACTGGTCTACAAATAACCTTGCTTCATTAAaaactactcattattatttgtagatcagtcaatcGTTCACCATTTACCCACAATGCATCATGGACATGATGCTCTCAAACACGGCCATGGACTTTAAAGGCTAATAAGACATGGTTGAAAGTGCAAACAATTTCTTTTCATCGGATGAGATGAGTGTGCGCGGGGGGCAGGGTAGTGACGAGGTGCTGGTGTCCCAGGCGGTGTGGGACTACCTGGCTGCCGCCGGCCAGCCCTGGCTCATAGACTTTCAGGACAAGCAGGGCTTGAGCGCCGGCATCATCCGCCGAGGTGAGCGGGGAGGCTGCTGTGCAGTGCGGCTACGCCCCATAGAGGGATCCCGTTCTGGGGGAGGACCCGGGATGATGGAGGAAGGACCCATCTCCAACGAGACCCGCAAGGCCTTCATAGACTTATGCCGCTGCGCCCGCAAAGAGATGAGCAAACAGGATGGGGGTCCTAAACGGAAGAGGTCCCTGCTGCCCTGCGTTGGGGTGGGGGtcctggagggggatggagaggggagccTGCTACCACCTCAGCCTCCCCAGCCCAGACGCTCTCAGAGGCAGCAACAGAGATATAAGAAGCCAGCGGAGGAAGAGGCCTGTGTGGTCCTCTCCAACTCCACGTCCCACAACGAATCCGGACAGAGGAAGAAGGACAACATGGAGGTCAGCTGCAGTATGATGGCCTCCTCTCATAACCAATCCCACAGTGAGGCAGACGACTACACCTCATGTTCCATCTGCATGGGCGACATGGTGGAGAGGACCACGCTGGAGAGgtgCGGCCACGCATTCTGCCGGTTGTGTCTAGACCAGGCCTTCAAGGTGAAGAGAGCGTGTCCTGTGTGTCGTCAGGTGTACGGCCAGCTCATAGGGAACCAGCCGGCTACCGGGTGTATGATGGTGGAGAGGGACCCAGATCTGGAGTTGCCAGGACACGAGGGTTATGGGTGTATCTGCATCATCTACAGCTTCCCACCTGGTTTACAggcgCCAGAGCACCCTAACCCGGGGGTGAGGTACCCTGGGACGGACCGCGTGGCTTACCTCCCAGACAGCCCAGAGGGGAACCGGGTCCTGGGCCTGCTCCGCCGGGCCTTCGAACAGCGCCTCATCTTCACCATAGGGACTTCCATGACCACAGGAATGCATAATGTCATCACCTGGAACGACATCCACCACAAGACCTCCTTATGGGGCGGACCACACTGCTTTGGATACCCAGACCCCACTTACCTGGTGAGAGTGACCGAGGAACTCAGAGAGAAAGGCATCGCTGCAGACTGACCGTACAGATTCTAGAATGATTATTCTAGGAACATTTTAGGAACCTCTGGCTGCCCTGCTGCTGCAGGTGGTTGCTAGGCTGCAGTCTCCTGGACCTAGACCCAGCAGAGCAGCGGAGGAATACGAGATGTGACTGGGCCCCACAGCAGCCACAGGAGTACGGCCCAGTGGAGGCCCACATATCCCTACAAGACCACTTGATGGGGTGACTCCTACCTTCCACTTCAGTCGAATTTTCACTaatcatgcattgatgtcaattgGAGACCATTTTACTTAAGTGGAAGTGAACATTTATCTAAAGTGGAATTTAGGATTCACCCTTATGTTCCTATCCTCGTTATCTATCTTCCGAGTTCGGCTCAACCCAGCAGCACTTTGTGTTGAAGAAAACATACAAATGAGTGCAGTGCAATCTCTGTGTGAGCTGTTTTTGGCTCCACTCATCCAAGTATTTATCATATAGGGATTCATAATGTGAAGGTACATACTacttaaatattattttgaaaccTAAGTTCAAAGAAGAGTCCTATTTTGTCtgttatatttatgtttatttccaCGCACATTCTTTATTTACCTGTTAAAAACACATGATTTGTGCTCTGTCCAGTACGCTCTTAGAATAATTATATTTTTCTTGATGTAATTATGTTAATAATAACCTGTTATTTACACTGTAGTAAGACAGTACTCGAGATAGTTGGTGGCAGGCAGAATAGTACTGTCTGTTTCAATAGAAAGCTCCTAAAGAAATAATGACATTTCTCTGAAAGGAGTTGCACTCGAAGGCACTTTGtcaaggagggagggagtccGTCAGTAGTTCAGTCACTGTTGGAGGGGGAGTTGTTCTCTGCATAGAATAAGAATTATCCGTTTGAATTAGAATGATCATTCTAATTCTGTGGTTCTCTGCTTCCACTTCAGGGAACTGGTAGATGGAAGAATGCTCTGAGCAAAGCCAGGCAGGCGTTAGTCGTTAGCAGCCGTGAAGCTAATAGCCTGGTAGCTATAAGTTGATGTCAATTTTCTTGTAGCCCTTCATTTCCCTTTTGATCTTCCTCTCCTTTGATTTCTTCTCCTTTTTACTTAAATAGGAAGAATGTTTTCTATttgatgtctctctctgctgcaccGTTCTGTTCTAGCGGATGAACCAGGAATGTCCAGATAGACTGACTACTAAGTATGAGATTCATTGTCATTCCTGACtgtcccttgctctctctctctcctctctcccctcggTTGTTTCTCTACTCTAAGATGTTATCCCTCCCAGGACCAGGCcctgtattcacaaagtgtctccGAGTAGTAGGGCTGATGTAGGATCAGTGTGGCCTTTTCAATCATAATGAATGAATAGGgaccctgatcctagatcagcactcctactctgacaaGCTTAATGAATAGGAGACCAGGTTCTGAGTTCAGTTTGAtttccagccagccagccagtcagtcagcaccCCTCATTTTGTAATAACCAGATTTACTTGATGATGTCAAATAAGGAGGGCGTGATGTCGAACCACTTAAACCAAATCAAATGCACAATAGGGCTGTATATTTAATACCTCTGACCCTggctgaaatggcaccctattccctatacagagtAAAAGTGCCCATAGGCTTCTGGTcaaatgtagggcactatatcggactctggtccaaagtagtgtagggaatagtgtgccattttggatgcaagcCCTATCTGTCCAGGAGACGTTTGTTTGACGATTGTCTCATAAATAATGAGGTATCTATCTGCTGTAATTCACATTTGTCTTCTACAGGAATAATCTAGGATTAACAAAATATGTACCTGTGATATGAAAGTGTTGAGGAAAATCCTGCAGTCCCTTACAGCGGCATTGCCAGTGAGGTATTTAGTTCCCTTGTTTTGATACATTTATCAAACGGTTAGCGTGCCTATATTCTAGTCAAGTTTGAAGACAGTGGATCATGTTGATATTAATTCATGACAAGCATGTTCTTTTAGTAGACTGTCTTAATTGTTATTTGGAGGGTGAGACTCAGCAGCGTTATCTGGCTTTCTACTGtttttgagaagaaaaaaaaaatatatatatatacacacacacacacatcagtacagtgccttgcgaaagtattcggccccctttgcgaccttttgccacatttcaggcttcaaacat
>XM_036988789.1
TTGAGCTGGACCGACATTGCAGAAGACTACCGACTGACTGGTCTACAAATAACCTTGCTTCATTAAaaactactcattattatttgtagatcagtcaatcGTTCACCATTTACCCACAATGCATCATGGACATGATGCTCTCAAACACGGCCATGGACTTTAAAGGCTAATAAGACATGGTTGAAAGTGCAAACAATTTCTGTAAGTATTTGTCTTGAGTACGCAGCTGTCACAAGCCGAATGAAATAACTAACGTGGAATCGTAGCCTAGTGTGTAATTGGGGGTTGATGTTGTAGTAGTCTGTCTCAAGGACGTGGAAATAGGAAGACAAACTCCAGTAGCGAGCGAGAAGGGGACTCGGATGaattgttagctaacgttacggaTAGCTTAGAGTGGATATCAAGTATGTCTTGACTACAAAATACGTATCAACATATCCACCGCAGTACACGATTTTCAGGCCTCGTCCAATGGAAGATGGTGTAGCTAGTTCCATAATCTCTAAAACTCATCTGACAGCTACGGCAAAAGGGGGATATTTTCTCGATTGAAGGGAATATATGGGATCGCAAGTTTCATCGGATGAGATGAGTGTGCGCGGGGGGCAGGGTAGTGACGAGGTGCTGGTGTCCCAGGCGGTGTGGGACTACCTGGCTGCCGCCGGCCAGCCCTGGCTCATAGACTTTCAGGACAAGCAGGGCTTGAGCGCCGGCATCATCCGCCGAGGTGAGCGGGGAGGCTGCTGTGCAGTGCGGCTACGCCCCATAGAGGGATCCCGTTCTGGGGGAGGACCCGGGATGATGGAGGAAGGACCCATCTCCAACGAGACCCGCAAGGCCTTCATAGACTTATGCCGCTGCGCCCGCAAAGAGATGAGCAAACAGGATGGGGGTCCTAAACGGAAGAGGTCCCTGCTGCCCTGCGTTGGGGTGGGGGtcctggagggggatggagaggggagccTGCTACCACCTCAGCCTCCCCAGCCCAGACGCTCTCAGAGGCAGCAACAGAGATATAAGAAGCCAGCGGAGGAAGAGGCCTGTGTGGTCCTCTCCAACTCCACGTCCCACAACGAATCCGGACAGAGGAAGAAGGACAACATGGAGGTCAGCTGCAGTATGATGGCCTCCTCTCATAACCAATCCCACAGTGAGGCAGACGACTACACCTCATGTTCCATCTGCATGGGCGACATGGTGGAGAGGACCACGCTGGAGAGgtgCGGCCACGCATTCTGCCGGTTGTGTCTAGACCAGGCCTTCAAGGTGAAGAGAGCGTGTCCTGTGTGTCGTCAGGTGTACGGCCAGCTCATAGGGAACCAGCCGGCTACCGGGTGTATGATGGTGGAGAGGGACCCAGATCTGGAGTTGCCAGGACACGAGGGTTATGGGTGTATCTGCATCATCTACAGCTTCCCACCTGGTTTACAggcgCCAGAGCACCCTAACCCGGGGGTGAGGTACCCTGGGACGGACCGCGTGGCTTACCTCCCAGACAGCCCAGAGGGGAACCGGGTCCTGGGCCTGCTCCGCCGGGCCTTCGAACAGCGCCTCATCTTCACCATAGGGACTTCCATGACCACAGGAATGCATAATGTCATCACCTGGAACGACATCCACCACAAGACCTCCTTATGGGGCGGACCACACTGCTTTGGATACCCAGACCCCACTTACCTGGTGAGAGTGACCGAGGAACTCAGAGAGAAAGGCATCGCTGCAGACTGA
>XM_036988790.1
TTGAGCTGGACCGACATTGCAGAAGACTACCGACTGACTGGTCTACAAATAACCTTGCTTCATTAAaaactactcattattatttgtagatcagtcaatcGTTCACCATTTACCCACAATGCATCATGGACATGATGCTCTCAAACACGGCCATGGACTTTAAAGGCTAATAAGACATGGTTGAAAGTGCAAACAATTTCTGGGGATATTTTCTCGATTGAAGGGAATATATGGGATCGCAAGTTTCATCGGATGAGATGAGTGTGCGCGGGGGGCAGGGTAGTGACGAGGTGCTGGTGTCCCAGGCGGTGTGGGACTACCTGGCTGCCGCCGGCCAGCCCTGGCTCATAGACTTTCAGGACAAGCAGGGCTTGAGCGCCGGCATCATCCGCCGAGGTGAGCGGGGAGGCTGCTGTGCAGTGCGGCTACGCCCCATAGAGGGATCCCGTTCTGGGGGAGGACCCGGGATGATGGAGGAAGGACCCATCTCCAACGAGACCCGCAAGGCCTTCATAGACTTATGCCGCTGCGCCCGCAAAGAGATGAGCAAACAGGATGGGGGTCCTAAACGGAAGAGGTCCCTGCTGCCCTGCGTTGGGGTGGGGGtcctggagggggatggagaggggagccTGCTACCACCTCAGCCTCCCCAGCCCAGACGCTCTCAGAGGCAGCAACAGAGATATAAGAAGCCAGCGGAGGAAGAGGCCTGTGTGGTCCTCTCCAACTCCACGTCCCACAACGAATCCGGACAGAGGAAGAAGGACAACATGGAGGTCAGCTGCAGTATGATGGCCTCCTCTCATAACCAATCCCACAGTGAGGCAGACGACTACACCTCATGTTCCATCTGCATGGGCGACATGGTGGAGAGGACCACGCTGGAGAGgtgCGGCCACGCATTCTGCCGGTTGTGTCTAGACCAGGCCTTCAAGGTGAAGAGAGCGTGTCCTGTGTGTCGTCAGGTGTACGGCCAGCTCATAGGGAACCAGCCGGCTACCGGGTGTATGATGGTGGAGAGGGACCCAGATCTGGAGTTGCCAGGACACGAGGGTTATGGGTGTATCTGCATCATCTACAGCTTCCCACCTGGTTTACAggcgCCAGAGCACCCTAACCCGGGGGTGAGGTACCCTGGGACGGACCGCGTGGCTTACCTCCCAGACAGCCCAGAGGGGAACCGGGTCCTGGGCCTGCTCCGCCGGGCCTTCGAACAGCGCCTCATCTTCACCATAGGGACTTCCATGACCACAGGAATGCATAATGTCATCACCTGGAACGACATCCACCACAAGACCTCCTTATGGGGCGGACCACACTGCTTTGGATACCCAGACCCCACTTACCTGGTGAGAGTGACCGAGGAACTCAGAGAGAAAGGCATCGCTGCAGACTGA

Function

NR:

description
probable E3 ubiquitin-protein ligase DTX3 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K06058 DTX; deltex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988788.1 False 3556 mRNA 0.48 5 67587799 67603010
XM_036988789.1 False 1734 mRNA 0.54 6 67589997 67603010
XM_036988790.1 True 1400 mRNA 0.57 6 67589997 67603010

Neighbor

gene id symbol gene type direction distance location
LOC110532727 LOC106572699 coding downstream 27227 67543067 ~ 67560577 (-)
LOC110531246 LOC106572701 coding downstream 132138 67327762 ~ 67455661 (-)
LOC110532725 LOC106572703 coding downstream 265421 67298005 ~ 67322378 (-)
LOC110532723 LOC106572705 coding downstream 293863 67278849 ~ 67293936 (-)
LOC110532721 LOC106572706 coding downstream 324324 67258695 ~ 67263475 (-)
LOC118966100 NA coding upstream 8122 67611132 ~ 67613318 (-)
LOC110532730 LOC106572695 coding upstream 25727 67628737 ~ 67633978 (-)
LOC110532733 LOC106567001 coding upstream 192047 67795057 ~ 67904020 (-)
LOC110532734 LOC106572725 coding upstream 327810 67930820 ~ 68027791 (-)
LOC118966101 NA coding upstream 364803 67967813 ~ 67971445 (-)
G834315 NA non-coding downstream 32000 67555492 ~ 67555799 (-)
G834284 NA non-coding downstream 74702 67512619 ~ 67513097 (-)
G834283 NA non-coding downstream 76195 67511030 ~ 67511604 (-)
G833825 NA non-coding downstream 128406 67458964 ~ 67459393 (-)
G833823 NA non-coding downstream 129528 67458065 ~ 67458271 (-)
G834289 NA non-coding upstream 14387 67617397 ~ 67618114 (-)
G834332 NA non-coding upstream 17243 67620253 ~ 67620459 (-)
G834299 tebp non-coding upstream 19337 67622347 ~ 67625930 (-)
G834335 NA non-coding upstream 31046 67634056 ~ 67634467 (-)
G834339 NA non-coding upstream 36887 67639897 ~ 67640185 (-)
G833521 NA other downstream 402556 67179249 ~ 67185243 (-)
G833029 NA other downstream 999119 66587412 ~ 66588680 (-)
G832991 myl6b other downstream 1076233 66506278 ~ 66515999 (-)
LOC110531249 LOC106572727 other upstream 425398 68028408 ~ 68079899 (-)
G834676 NA other upstream 772648 68375658 ~ 68376157 (-)
G835608 LOC106572767 other upstream 1376873 68979883 ~ 69058294 (-)
G835808 NA other upstream 1828557 69431567 ~ 69431900 (-)
LOC118966109 NA other upstream 2479796 70082681 ~ 70084697 (-)

Expression


Co-expression Network