LOC110532731 (LOC106572722)


Basic Information

Item Value
gene id LOC110532731
gene name LOC106572722
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67718177 ~ 67755296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616844.2
ggagaggagggagagagggagggagagggatagttGAGTTGTGTCCCATACATGGAGACAAAAAAGGCAGCGGTGAACACAAggtctgctctctgctctctgctctctgctctctgctctctgctctctgctctctgcccaACAGGATTATCTAACTGCTGCGTTCAGATAGAAAGAGAATCTGCAGGCATGAATAGGGTAAGAAGGGTGTTGTAGCCCGTTAGTACTGGCAACCCCTAACAGTGATGGACAACAGGCAGACAGATGCTAACCTGGACCTGGCTGGTTACTGCTCTCCTCTGACAGAACTACTCTCCTCCTAACTGAGACCAGCTCCACAGAATGTTGAGCCCCGTTGCCCCCTATAGCCTGTATAAGATGCACTGGAACCCGGAGCATGcccagtccctcagtcagtccctcagccAGTCCCTCAGCCAGTGGCCTGAGCAGCACCTGGATGTGTCTTCCACCACCTCCTCACCGGCCCACAAGTCTGAGCTTTACGCCGCTGGCCACGCCCACGGCCGAGGTGGCTACGCCTGGGCCAATGATGACATCTCAGCCCTCACCGCCTCCAACCTGCTGAAGAGCTATGCAGAGAAGTACTGTGATGTTCTAGACTCGCCATACGACCGTCCACCGGGGCCCGCTGTAGGGGCCTACCCAGAGCCAGGGGCTTTCGGGGGCCTTATTGGCCTCAAGACTGAGCTGGAACACTGGCCCCTGAGCCACAGTGCAGAAGGGCTATACCCCGGGTCCCTGGATGGTCTCTCGGGCCCGAAGGCCGGGGCCACATCAGCAGGGCCCCCAGGGGCGAGCAATATGTCAGGGGTCAACAGTAACCTCTCAGAATCTTGTTATAGTGGTAGCAGCTCCTCCTCTGGCTCTCACTCAGGTGACTACAACCGCCCCAGCTACAACGGTACCTACGTCTCGCCTGGCTACTGCCCCCAGCCCCCTTCAGCactcccccctgcctccctccaacACCCCCTCCAGCCCACACCCACCCTGTTGCCCAGCTACTCCCTCTCCACCTCGGTCTACAACTACCCCCCCAGCAGCTACCCCCACCAGCCCGGCCTGGGCCCCACCTACAGCCACCCCTCTGCAGGGTACTTACCCCCGGGGCTGGCCGCCCCCACTCCCCTCCCGTCTCGGCCCACCGTGGTCGGGGGTAGCTACGGCTACCAGGAATCCAGAGGTGGGTTGAAGAGGAAGGCGTTTGAAATGTCATTagacgaggaggaggatggcTCTAGATACAGTAAGTATACAAGCTACGACCCAGTGAAGCCCGGAGGAggggactctctctctccctacagagtGGGAGATAAAGAAAACAGTGGCTTCACCACGGGCAGCACAGATCCCCAGGCCTTCAAGCCCAGTAAGCCCTCCTCCCAGCTCCTCGTGTCTCCTCCGTACAGGGTGGCTTTAGCAGGGGACTACAGCCCACCAGCAGGGATGACTGGGGAGAacgtaggaggaggaggagggtcagAGAACCAGGGCTTCACCCAGCAGCAGCACCACTCCTCCCTGGTCCACAACAATAAACTCCCCTCCCTGCATGGCCAGGGCCAGCCTGGGTCTGGGCCAGGGGAGTCGGGCAGCCTGAAGAGCCCAGACCCCAGGCTTCTGGATCTAGTCAATGGGGAGTTGCTGGACTGTAGCCCGGCCCTGCTATGGGGGGAGCTGGCTGGGCTGACCCATGTCAAGGCTGCCCTGGAGGAGGAGCTGCTGTGGCCCTGTCTTAGGCCCAGCCCCGCTGTCCGCCCCCCAGCCACTGTTCTGTTATTCGGCCCCCGAGGAGGCGGGAAGACCACCCTAGCACGCTCCATGGCCTCCCAGCTTGGGGCCTCCTTCTATAGGCTCAGCGGGGCCATGTTAGCCTCTAAAGGCAAGGCTGAGGCTGAGGGGATCCTGGAGGCCACACTGCAGGTGGCGGGGTTGAGGCAGCCCTCCGTGGTGCTGCTCAGTGAGGTGGAGGctatggagaaggaggaggggttgAGGCAGGTGTTGCTATCTGCCCTGGAGAAGGCCCAGATGGAGTTAGGATCGGCGGGAGGAGCCCCTGGGCTGGTGATCATGGTGTGTGCCACCGGTAGGCCAGATCTGCTCCAGGATGCTGTGCATCGGAGCTTCGCCAAGCGCTACCACGTGGGCCTGCCAGATGCTTTTTACAGAAAGCCGAGTTGAGCGCAACGTGCATCTCCAGTTAGTTAGGATTCCATCCAAAGATCTTGGTTATTCGTGATCCAAGACATAAATCAGCAATGTGTTGTCAAGGTGACATGGTCCAAGGAAATGGATAGTCAGGGTCCTGTTCATGAGGCAccaaacaaaataaaacatacAGAAACAGGGAAGGAACAACCTGGATTTGTCCATTAAGAAAAATGTATTTTCGATTTCCATTGCAAAACAGACTGAATAGGGCCAGGACTACCTGGACTCGTCCAACATAGaacacacatttttgttttccatCGCAAAACTTTTTAAAACGTTTgccctaatgaacaggacccaggGTTGATTTGGGAGAACCCCCTGTTGACTGACTGCTACTCTCAGGACTTTATTCATTACAGTCCTCCCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTCCCCCCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTCTACTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTGGTATTTTAGATTTCATTACCTTATTCATTACCAGTCCTCCCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTCCCCCCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCCCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCACTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATTTCATTACCTTATTCGTTACCAGTCCTCTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTGGTATTTTAGATTTCATTACCTTATTCATTACCAGTCCACTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCCCCTGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTGGTGTTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTCTACTCCTGTGGTGCTTTAGATTTCATTACCTTATTCATTACTAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTCTACTCCTGTGGTGCTTTAGATTTCATTACCTTATTCATTACCAGTCCTCCCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTGGTGTTTTAGATTTCATTACCTTATTCGTTACCAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACTAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACCAGTGGTATTTTAGATTTCATTACCTTATTCATTACCAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTCATTACTAGTCCTCTCCTGTGGTGTTTTAGATGTCATTACCTTATTTATCACCCTATTTAGCATCATTATTGGTCATTTGGGTGTGAAAAGAGCTTAGGATCTATCTGAataacttttcttttttttttaaaccccaAAATATCAATAGTAGCTCATCGTCTCTTATTGACTTAAAACATAGCTTCTCACCAAAATCATGACATCATGACCATTACAAAAATCAAACTTTAAAAAAACGTTGAAATGGAACGTATTGGTCATGGTACTGGGCTGTATTTGATAATAGACtcggtggttcgagccctgaatattgattggctgaaagccgtgagactgtataccacgggtatgacaaacatTTAATTTGACTGTTCTAGTTACatttgtaaccagtttataatagcaataaggcacctttgGAGGTTTGTGGTAtgctatatggccaatataccacagcgtAGCGTTGTTCCTAAGAACAGCCCTGAGCCGTGGTATATTTGCCaaataccacacctcctcaggccttattgcttaaatatacaacGCTATAATTCAAAGACATAAGCATAATGTCCACACATGTATTTGAATGTTGATTTATCACATATTCCTCGTTCACCAGTTCCTGAGAATGTTGCTTTAATACAAAAtataacacacacaggcactgcaAGGCAAGATGGCAGCTCCTTGGATGTTGCTTTAATACAAAAtataacacacacaggcacagtaaGGCGGAAGCCTTGTTTGAAATGCTCAGGAAAAAATGAATTTACCTCAGAAATTTGAAATAAAGAATGTATGTAATCTTCAGGTCTTggtggagagagtagaggaggagagaaagaggagagaaagaagaggagagaaagagggggaggaaaaaGAGAAGAGCCCTAACAGAGTCCTGTTGCATACACACTGCAGCTGTCTGTGCATATACCTTTGGGGAGAAACTTGAAAATGCTACAAAGAGTAACATTGAATGTAATTCAGGTATTTCACAGGATATTTGACGCCATAAAATCAATGGTTTTATTATTATATGTgaatataaatacatgtttttaaatTTGAATGTCTATTTTTCTTTTGGTGGAAggctggttgtgtttatgaagtGTTATGTTGAACACAGAAAATATTAGATTTTTGTTGGACAAACTGTTTACAAATCAACCCAAAGCATTGTGTTTACATGTACTATTCACAAATGAATGTTATATACACATTTTATTGTAATAGATGCAAATCTTCATTGAAAGATGTAAACAAAAGGTGTACATTTAAATGACACTTATATTTCAAACCTGGACACAGACAAGATATAACAGAAGAAAATAGAAGATGCACCTGAAGATGTTGTCTAATAATAAAAAGAGAGAAGCCTAGTTGTTAgaccattgggccagtaaccgaaaggttgctggattaaatccccgagctgacaaacaaggtaaaaaatctgtcgttctgcccctgagcaaggcagttaacccactgatccctgggtgctgaagacgtggatgttgattaaggcagcacctctctggttcagaggggttgggttaaatgcgcaagacacatttcagttgaatgcattcagttgtactacTGACTAAGTATCCCCCTTTTCCTAATCAGTATTATGCTTTATGTAAAATACAATACTAGATATAACATGTAGACAATCCAGAGGAAAACATATTCACAGTGTTGTATCTCTACCACTCTGTTTAACAAAAGTCTGGAAACATGAGgtcattcagttcagttctgTACTGACGTGATGTCATGAATATTGGTTTGTTACCATAGTTATGTAGACTGGAGGCACACGCTGGAGGATGATGTAATGTtcttacccccccacccccaatgcAATCTCATTATGGtagtatcaccccccccccccccccccccccctattttgGAGTGGCATTGCTCTGATTGGATATATCACCACTCTGGCCTCCCAGTGTCCTCAGTACAGCTGGTGTCTTCAGTCATGCCATACAGCCGGGTCAAACACACTGACCCCAAGGTTCAGGCACATATTGATCActttgtctcaaatggcaccctattccctttatagtacacaaCTTTTGACTAGGGCCTTGGTCAAacgtaatgcactatatagggaatagggtgccattggcaaCATGGTAGGTCTAATAAACTAAAAATACATCTTTAAACCAAGCAGGAGAACTCAGCCTTGGGAGGGTACTGAGAGATGGGTTAAATATGTAATCATTTACATGCAACTACATCAAGATACATAATTGATAATAATCATTACAGGCTGTTATAATTAGCTTTCAGATAGAGGTGTTGCATATCTGGCAGGGCCTGAGGCTTGAGGCCAACTGTCGTAGTTTAAAACAGAGGTAATGAGAGTTTAGTTCATGAATAGCAGCCTATATCTATACTATAATTAGTCAATGTGATTCGTTAAACATCTTTCAGCCAGTTCACCAGGCTCAGATTCCCCAAAACGTCCATGTTTGTCTAACATGTAGATTTAGAAGAACATACTTATTTTGTTAATTTTTCTGTCAGTTGTTTACTTGTTTTTACTTAATGGATTACCTCGCTAAACATATATGCTTGATGGTATCAGTCCGAGTTCATTAGCAGGAACGGCTCAGATCATTAGAAGGTATTGATGATTGGGTGAGGTAGCCCTTTTAAAGTGCAATGAGCTCACAACGTCTGGCTGATTTCTTGGAAAAAGACTTGGTGATAAACTGATTATCACAGAATAGTCACCCAATATGACTAAATAGTCATAGGATAGTCACTAAATAGTCTCAGATTTAACCGaaacactga
>TU948412
GTGAACACAAggtctgctctctgctctctgctctctgctctctgctctctgctctctgctctctgcccaACAGGATTATCTAACTGCTGCGTTCAGATAGAAAGAGAATCTGCAGGCATGAATAGGGTAAGAAGGGTGTTGTAGCCCGTTAGTACTGGCAACCCCTAACAGTGATGGACAACAGGCAGACAGATGCTAACCTGGACCTGGCTGGTTACTGCTCTCCTCTGACAGAACTACTCTCCTCCTAACTGAGACCAGCTCCACAGAATGTTGAGCCCCGTTGCCCCCTATA
>TU948431
GCCTTATTGGCCTCAAGACTGAGCTGGAACACTGGCCCCTGAGCCACAGTGCAGAAGGGCTATACCCCGGGTCCCTGGATGGTCTCTCGGGCCCGAAGGCCGGGGCCACATCAGCAGGGCCCCCAGGGGCGAGCAATATGTCAGGGGTCAACAGTAACCTCTCAGAATCTTGTTATAGTGGTAGCAGCTCCTCCTCTGGCTCTCACTCA
>TU948434
TGTAATCTTCAGGTCTTggtggagagagtagaggaggagagaaagaggagagaaagaagaggagagaaagagggggaggaaaaaGAGAAGAGCCCTAACAGAGTCCTGTTGCATACACACTGCAGCTGTCTGTGCATATACCTTTGGGGAGAAACTTGAAAATGCTACAAAGAGTAACATTGAATGTAATTCAGGTATTTCACAGGATATTTGACGCCATAAAATCAATGGTTTTATTATTATATGTgaatataaatacatgtttttaaatTTGAATGTCTATTTTTCTTTTGGTGGAAggctggttgtgtttatgaagtGTTATGTTGAACACAGAAAATATTAGATTTTTGTTGGACAAACTGTTTACAAATCAACCCAAAGCATTGTGTTTACATGTACTATTCACAAATGAA
>TU948433
AGCTCACAACGTCTGGCTGATTTCTTGGAAAAAGACTTGGTGATAAACTGATTATCACAGAATAGTCACCCAATATGACTAAATAGTCATAGGATAGTCACTAAATAGTCTCAGATTTAACCGaaacactgagagagaaagccCTGTCCTGAATTGATCTGGGATAACGCTATACAATGCCAAAGTTTCAAATGAGATTCTTACAAATGGAGAAAACGTTTCACCAATGCAGCAGCATGTTAGGATCATATCCCAGAAGTCCATCACGTCTACAATACACCTGTTTGTAAATCAGTGTTTTGTCTTTATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616844.2 False 6844 mRNA 0.46 3 67718177 67755115
TU948412 False 295 lncRNA 0.52 2 67718249 67727235
TU948431 False 209 lncRNA 0.60 1 67748960 67749168
TU948434 False 416 lncRNA 0.35 1 67753077 67753492
TU948433 True 313 lncRNA 0.38 1 67754984 67755296

Neighbor

gene id symbol gene type direction distance location
tebp tebp coding upstream 92200 67622423 ~ 67625977 (+)
LOC110532729 LOC106572697 coding upstream 100063 67607673 ~ 67618114 (+)
LOC110532726 LOC106572718 coding upstream 200180 67480352 ~ 67580588 (+)
LOC110532722 LOC106572704 coding upstream 439874 67263564 ~ 67278303 (+)
LOC110532719 ssrd coding upstream 668292 67045197 ~ 67049885 (+)
LOC110533034 LOC106572723 coding downstream 13225 67768340 ~ 67772836 (+)
LOC110533035 LOC106572734 coding downstream 149916 67905031 ~ 67911226 (+)
LOC118965940 LOC106572726 coding downstream 167542 67922657 ~ 67934517 (+)
LOC110532736 LOC106572735 coding downstream 344578 68099693 ~ 68111105 (+)
LOC110533037 NA coding downstream 455064 68210179 ~ 68212326 (+)
G833918 NA non-coding upstream 50376 67667056 ~ 67667801 (+)
G833910 NA non-coding upstream 81378 67636248 ~ 67636799 (+)
G833908 LOC106572695 non-coding upstream 84847 67632372 ~ 67633330 (+)
G833905 NA non-coding upstream 97649 67620312 ~ 67620528 (+)
G833868 NA non-coding upstream 119085 67540008 ~ 67599092 (+)
G833959 NA non-coding downstream 9603 67764718 ~ 67764939 (+)
G833972 LOC106572784 non-coding downstream 51583 67806698 ~ 67808863 (+)
G834092 NA non-coding downstream 284634 68039749 ~ 68040023 (+)
G834095 NA non-coding downstream 288020 68043135 ~ 68043342 (+)
G834097 NA non-coding downstream 292627 68047742 ~ 68047960 (+)
G833906 LOC100194703 other upstream 96811 67620878 ~ 67621366 (+)
G833541 NA other upstream 504293 67213420 ~ 67213884 (+)
G833241 LOC106572720 other upstream 783690 66931688 ~ 66934487 (+)
G833139 LOC100380641 other upstream 896538 66814464 ~ 66821639 (+)
G833100 LOC106613929 other upstream 958504 66759278 ~ 66759673 (+)
G834099 NA other downstream 293798 68048913 ~ 68049222 (+)
fance fance other downstream 461963 68213202 ~ 68218960 (+)
G834228 NA other downstream 512922 68268037 ~ 68268408 (+)
G834235 NA other downstream 532100 68287215 ~ 68288525 (+)
LOC110531253 LOC106572751 other downstream 711444 68451084 ~ 68470509 (+)
G833888 NA non-coding upstream 131957 67585284 ~ 67586292 (+)

Expression


Co-expression Network