XLOC_026769


Basic Information

Item Value
gene id XLOC_026769
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50338780 ~ 50341046 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053127
TATTGAAGAGGATGGTGACGGCGGGCGGCCACTTGTACGCACTTCACCAACGGTCGTGGACCTAACTGGAGCAAAGGCATTTTGGTAAGTAATAATTGGATTTCTAATATATTGTTTCAGATCAGTTATCAGTTTCATCGTCGGAAATGTAAATGTCATCGGCGTGGTTGTCAGTGTATCCATAAGCTCGATAAATATTCTTTAACGTTAGCTAAAGTTAATTTATCTCATGTTAAGTGGCACATCATGATAAATAAACtccaaaataatatgtaaattaacAGAAGACATGGTATAACACAATTTAAGGATATTTATTCGTTTTGTTTATCCTTATCGAACGTTACTGAGATTATCTCATTAAAAGTTGGACCATTTTCGTGCTGTGATGTTAACCCATAGCCTTTGCAAAGTTGATGTTTATGTAATAAAGCGAGAGATTAAGGGCATTTCAAGCAAAAACAGAATGATCACTTGGAATGATTCAAAATGTATTCTAAAATCACACCCCTCTCTAgcatgcacgcacgcatgcatgcatgcatgcatgcattggAAAGGGAGATCtttaatgtattatatttgtattatgaaCAAAAACGAAGCCTAAATTATGAGGAAATTTGCTTAATTAAAGCTAAGATATATCGAATTTGAGTATGCTGTATACATTATGTGCTTACGTGGATAAGAAAGCTCTCTACTTTTATGTGCATGTGAATAAATAAGCAATTTTAGATAAGATTGTTTCATGCCTGAACTATTAACGTTAAGTAAAAAGAGTGAACAGGTTAGAGAaatagatttaaagggatagttcacacaaaaattagtGTACAATTACTctcctcaaatggttccaaatctttatgattttttttattttttctattaaacaccaaataaaatgttttgaaaaaagcagaaaacatgtatttgactttcatagtaggaaaaactaatagCAACAAATACAAGCGTAAATGtttctaataatgtttttttttttaaatgtgcttgtcaataacagtaaaaacacaaaaaaaaccaGAATAACAGTTTGacttagggctgcacgattaattgtattattttcatGAGAACTAAATTTGTGGCCAccaatcaataattaaatatcatCGCGGTTTTACATTATAAACACCAAGGagtgtttatattttttgttattaaaaaacaGCGAATGACATCAGGTTAGATGCTTTCATTTTGGAAGAGACTTAGCAGAATCTCAAACCTTGAGCATACATCACTTGCATAAATTttgccatggacattacattaagacgcctactggtttaaaaaggcctaaattaaaagaagatggacaaatgagaacttttctgtcataaactatactaaaacaacaacttgtcaaaaataataaaaaaaaacgaaacCCCGTAAACACATTAATTACAGGCATAGAGAAAAGGGTGCTCTTTTgttatcagctgtcaatcactgcctgctcttttttttttttttcatggtcaTTGCATCTTtgctgtgtgctgtgtaaatgcagacaatcagaTATGAGTCACTTTAAAAAACGATGTAAATAATTCAGCAAAAAAATCGGACAGTCACAAAATCAAAATTGACCATCAatatctgcagtgtaaatgcagccttactgTCCTTATTTGCTGGTGAACAAAGAGTGTTGAACCAATTATAGCATTTTACTAAAGCAGAGATTTAAAAGAACACTGCCAAAATATATCTAATTATTAAATTGCACACAGCTTTTTGAAAAGGAACTTAGACTGAATTCCTCCTGGAGCCatattactaaaattatttgCTTCAATTAAAAGTCTGTATAGCTGTAAAAGCATGTCTGTCAATATGTTCTGGTTGAGttttaatgtaattgtttttttaaaatccaaTATCCACATTAACTGTtgataaaaaaagctaatttcaaacatttacataTCTGTTTCAGTGGCTGTGAGACGAAACCGCCTGACATCTGAAGCCTCAGAAAAAGACATTGACTCAACCATCAAAAGATGGCTATATCTGGCCCCGGATAGGGATGGTGGCAGGAAAGAGAAACAGCAGCGAAAGGAGAATCAGGAGAAAACTGGTTAAAGAACTTGCTTATATGGGATTTGCAACTTAAAAGAGTGCAAAATGGTGTGTGTTCTGATGTTAAAGATTTACAGTATGATGATTTCtcttgttttgtcatgttttcttaaatgtgaaataataaatattgttcagAACAGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053127 True 2267 lncRNA 0.33 1 50338780 50341046

Neighbor

gene id symbol gene type direction distance location
XLOC_026768 arl16 coding downstream 60821 50271962 ~ 50277959 (-)
XLOC_026767 rasd2 coding downstream 161122 50175166 ~ 50177658 (-)
XLOC_026766 btr02 coding downstream 191620 50127726 ~ 50147160 (-)
XLOC_026765 cldnk coding downstream 211112 50123507 ~ 50127668 (-)
XLOC_026764 hgs coding downstream 220640 50076793 ~ 50118140 (-)
XLOC_026770 NA coding upstream 92505 50433551 ~ 50438278 (-)
XLOC_026771 NA coding upstream 92747 50433793 ~ 50434423 (-)
XLOC_026772 rcvrna coding upstream 100398 50441444 ~ 50443607 (-)
XLOC_026773 CR812464.1 coding upstream 387813 50728859 ~ 50749116 (-)
XLOC_026774 pmp22a coding upstream 520130 50861176 ~ 50865079 (-)
XLOC_026761 NA non-coding downstream 401045 49934636 ~ 49937735 (-)
XLOC_026754 NA non-coding downstream 920435 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 966104 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 1260901 49077762 ~ 49077879 (-)
XLOC_026747 NA non-coding downstream 1301998 49023900 ~ 49036782 (-)
XLOC_026777 NA non-coding upstream 918785 51259831 ~ 51273723 (-)
XLOC_026778 NA non-coding upstream 1104444 51445490 ~ 51448961 (-)

Expression


Co-expression Network