LOC110532737 (LOC106572728)


Basic Information

Item Value
gene id LOC110532737
gene name LOC106572728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68124488 ~ 68138733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988807.1
TATTATTTATCAAGAAAGTATAATAAAATGATTTTATTTCTTGAGGTCACCTCCAAGGGCGCAGGTCTGAACCCCAATGCCAAGGTGTGGCAGGCCCCTGCTGATGGCCCCGACGGAGCACAGTGGCCGCCGGCTGACATCACTGAAGGTTATTCCGAGTCTGTGCCCTCCACTGGTTGTAAACCGTACATGGTAGGCTTCACCACCCTGGAGGACAGCAGCTCCTCCGCAGCAGCCTCAGCTGAGATCACTGTGAACGGCATGGATCCTCCAGACCTGGCGTTCACCCCTGCTGAGACTACAACTGGGACCTTGGGGGAGACCAAGCTGACCGAGGAACAGCCCCTCTCGTCAGAGAACCTGACAGAGTCCCTCAAGAAAGAGCTGGAGTTCTACTTCTCTCGGGAGAACCTGTCCAAGGACCTATACCTGATGTCCCAGATGGACAGTGACCAGTTTGTCCCCATATGGACCATCGCCAGCATGGAGAGCATCAAGGCCCTCACTACTGACATGGAGCTCATCCTGGACGTGCTCCGATCCTCTCCAATGGTTCAGGTGGATGAGCAAGGAGAGAAGGTGCGTCCTGATCACAAACGCTGCATCATCATACTGAGGGAGGTTCCTGAGACGACACCTGTAGAGGAAGTGGAGGCTCTCTTTAAAAGTGATGACTGTCCGAAAGTCATTAGTGTAGAGTTTGCGCACAATAACAACTGGTACATCACATTCCAATCTGACACTGATGCTCAACAGGCACACAGATATCTAAGAGAAGAGGTGAAAACATTTCAGGGAAAACCTATCATGGCGAGGATAAAAGCCATCAACACATTCTTTGCTAAGAATGGGTACCGTAGCATGGACAGCAGCCTGTACACAGCCCAGCAGTCTGCCCCGACCCAGACCCAGTACAACCCTAACCTGTACATGCAGCACGTGTACAGCCCTCAGCAGCAGTACCCTCTCTACGGCATTGTACCACAGACCTGGACAACCTCTCCTACACCCTACTTCGAGACTCCGCTGGCACCATTTCCCAACAGTGGCTTTGTGAATGGATTCAGTTCTCCTGGACACTACAAGACTGGCAACAACTCCCTCCACATAACTCGCCCCTTCAACAGAAACCGGAACCATGTGAAACCCCAGGTGGGGAGACCAGGTGAAGTGACCCCTACATCTGTGGCCCCTGTCCCCTTGGAGAGCTTGACTGGCCTGAGGAGCCCTCAGCCCCCCACCACCAACCCTGGGCCCCTCCAGACCCCTCCGGACCCGACCTCAACcttcccccacctctcctccacctcctcggACCCCAATGATGACGGAAGCATGTCTGTACGTGGAAGAAGGACGACATACAGAGGCACgcgaaggaggagagaggatgagcgGATCACGAGACCCGTCCCTCTGGCTGAGGTAAAGGTGGCGCCCCCTAAGTTTGACCTGGCTACTACTAGTTTCCCCCCGCTGCCGGGCTGTGTGGCCAGTACCCAGGGAGAGCCCCTACTGGAGAACAGGATGTCTGACGTGGTGCGAGGACTGAACAGGGACAAGACAACGGAACTAGCCAACAAGGAAGTGAGTGCCGCCCCAGGACATGAGGAGGCAGTGTCTGTCTCTAGTCTTGTTCAGCCTACAGCCAAACTTGCTGTACACCCTCAAGCACCCCCcgcccctgtcccagcccccagCGTACCACATCAGGAGAAGAAGTGGGATAGGGTGGCAGAGCCCTCAGCCCCCAAAGTCACCCCACATAGACGTGCTATCTCTGGGGCCAACCCAACCGGACCCCCCTCCACACAGCCAGCTGTGTCTGGCCCCAAGCCCCAACCCAGAACAGTGTCCTCTACACCAGTTACACCGAGCACCCTGGcctctactaccaccaccaccaccaccactactacccctGCACCACTGGAGCCCCGCAAGCTCAGCTATGCCGAGGTGTGCCAGCGAGCCCCCCCTCCAGGCCCCCCAGCCTCGGCCTCCTCCACACCAGCCCAGCCGCTGCGTGAGCAGCGTGTCAACAAAGCAGAGGAGCCAGGATCCAGCTCCACCACCAGCCCAGACGACCACACCAGGGGAGATCGGCAGGACAAGGCCCAGGagagggatgggggctgggagtGCAAGGAGAGCCGACCACGTGACCGTGACCATCGAGACCGTGACTCCCGGGATGGACGGTACTACCGCAACAATGGACCCCCCAGACAGGGGGGCTCTGGGGGCCTCAAGTTCCATGAACAGAGACGGGGTCCCCAACTGGCCCGACGCAGCTCCCCCCAAGGATGCCCCCGACACACTGGCAAAGAGCAGAACATCCCCCCGGTATCGCCAAAGTAAAACTTCTGATATGACTgatgaaaacaaacaaaagtgtgacatatatggatatatatatatatatata
>XM_036988806.1
TCGCAGTGTGAGTCGGGACGGTGGCGCCCTTTACCAATGTCTGCCTGCTCTTAGGAAAGGTGCGTGTCCGCTTCGGTCGCCCGGCTAGGAATGCGCCTTTCGGCTTTGACGCTTGTTAAATTTTGGGTGGAAGAAACATTAGTGAAAAAGGTGGTTGATAAAAGTAGAGGCATGCGCTGGCATAGTTTTCGTCTGTAGTATATTGTCGTGCGAACTTGATTCACCAACGTTGATTAATATCTAgctgactagctagctaagtaggaTAGCTTACTTGCTAGCCCTGGctgtttagctagctatctttTGGTGTTGGCTAAAGAAGTCTAGCAGGAGATAACCCGATTGATTGTAGACAGCAACCTGTACTTTGAGAGACGAGGGGGTGGAACACGGGCCGGGGGGTTGGGAGGAAAACGACGGGGGAGACGTGAGCCAAGAGCGGCCGATGAGTTCGGACCAGGGCGGAGAGCCGCGGCTGCTGCAGGAGGAGGCTGATCCGGGGCCGAAGACCTGTGGGGAGCAAGAGACACCACTTGGGATCGGGGGAGGATCAGGCGGCATGGTCACCTCCAAGGGCGCAGGTCTGAACCCCAATGCCAAGGTGTGGCAGGCCCCTGCTGATGGCCCCGACGGAGCACAGTGGCCGCCGGCTGACATCACTGAAGGTTATTCCGAGTCTGTGCCCTCCACTGGTTGTAAACCGTACATGGTAGGCTTCACCACCCTGGAGGACAGCAGCTCCTCCGCAGCAGCCTCAGCTGAGATCACTGTGAACGGCATGGATCCTCCAGACCTGGCGTTCACCCCTGCTGAGACTACAACTGGGACCTTGGGGGAGACCAAGCTGACCGAGGAACAGCCCCTCTCGTCAGAGAACCTGACAGAGTCCCTCAAGAAAGAGCTGGAGTTCTACTTCTCTCGGGAGAACCTGTCCAAGGACCTATACCTGATGTCCCAGATGGACAGTGACCAGTTTGTCCCCATATGGACCATCGCCAGCATGGAGAGCATCAAGGCCCTCACTACTGACATGGAGCTCATCCTGGACGTGCTCCGATCCTCTCCAATGGTTCAGGTGGATGAGCAAGGAGAGAAGGTGCGTCCTGATCACAAACGCTGCATCATCATACTGAGGGAGGTTCCTGAGACGACACCTGTAGAGGAAGTGGAGGCTCTCTTTAAAAGTGATGACTGTCCGAAAGTCATTAGTGTAGAGTTTGCGCACAATAACAACTGGTACATCACATTCCAATCTGACACTGATGCTCAACAGGCACACAGATATCTAAGAGAAGAGGTGAAAACATTTCAGGGAAAACCTATCATGGCGAGGATAAAAGCCATCAACACATTCTTTGCTAAGAATGGGTACCGTAGCATGGACAGCAGCCTGTACACAGCCCAGCAGTCTGCCCCGACCCAGACCCAGTACAACCCTAACCTGTACATGCAGCACGTGTACAGCCCTCAGCAGCAGTACCCTCTCTACGGCATTGTACCACAGACCTGGACAACCTCTCCTACACCCTACTTCGAGACTCCGCTGGCACCATTTCCCAACAGTGGCTTTGTGAATGGATTCAGTTCTCCTGGACACTACAAGACTGGCAACAACTCCCTCCACATAACTCGCCCCTTCAACAGAAACCGGAACCATGTGAAACCCCAGGTGGGGAGACCAGGTGAAGTGACCCCTACATCTGTGGCCCCTGTCCCCTTGGAGAGCTTGACTGGCCTGAGGAGCCCTCAGCCCCCCACCACCAACCCTGGGCCCCTCCAGACCCCTCCGGACCCGACCTCAACcttcccccacctctcctccacctcctcggACCCCAATGATGACGGAAGCATGTCTGTACGTGGAAGAAGGACGACATACAGAGGCACgcgaaggaggagagaggatgagcgGATCACGAGACCCGTCCCTCTGGCTGAGGTAAAGGTGGCGCCCCCTAAGTTTGACCTGGCTACTACTAGTTTCCCCCCGCTGCCGGGCTGTGTGGCCAGTACCCAGGGAGAGCCCCTACTGGAGAACAGGATGTCTGACGTGGTGCGAGGACTGAACAGGGACAAGACAACGGAACTAGCCAACAAGGAAGTGAGTGCCGCCCCAGGACATGAGGAGGCAGTGTCTGTCTCTAGTCTTGTTCAGCCTACAGCCAAACTTGCTGTACACCCTCAAGCACCCCCcgcccctgtcccagcccccagCGTACCACATCAGGAGAAGAAGTGGGATAGGGTGGCAGAGCCCTCAGCCCCCAAAGTCACCCCACATAGACGTGCTATCTCTGGGGCCAACCCAACCGGACCCCCCTCCACACAGCCAGCTGTGTCTGGCCCCAAGCCCCAACCCAGAACAGTGTCCTCTACACCAGTTACACCGAGCACCCTGGcctctactaccaccaccaccaccaccactactacccctGCACCACTGGAGCCCCGCAAGCTCAGCTATGCCGAGGTGTGCCAGCGAGCCCCCCCTCCAGGCCCCCCAGCCTCGGCCTCCTCCACACCAGCCCAGCCGCTGCGTGAGCAGCGTGTCAACAAAGCAGAGGAGCCAGGATCCAGCTCCACCACCAGCCCAGACGACCACACCAGGGGAGATCGGCAGGACAAGGCCCAGGagagggatgggggctgggagtGCAAGGAGAGCCGACCACGTGACCGTGACCATCGAGACCGTGACTCCCGGGATGGACGGTACTACCGCAACAATGGACCCCCCAGACAGGGGGGCTCTGGGGGCCTCAAGTTCCATGAACAGAGACGGGGTCCCCAACTGGCCCGACGCAGCTCCCCCCAAGGATGCCCCCGACACACTGGCAAAGAGCAGAACATCCCCCCGGTATCGCCAAAGTAAAACTTCTGATATGACTgatgaaaacaaacaaaagtgtgacatatatggatatatatatatatatata

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988807.1 False 2428 mRNA 0.57 16 68124488 68136583
XM_036988806.1 True 2948 mRNA 0.57 16 68124488 68138733

Neighbor

gene id symbol gene type direction distance location
LOC110531249 LOC106572727 coding downstream 44589 68028408 ~ 68079899 (-)
LOC110532734 LOC106572725 coding downstream 96697 67930820 ~ 68027791 (-)
LOC118966101 NA coding downstream 153043 67967813 ~ 67971445 (-)
LOC110532733 LOC106567001 coding downstream 220468 67795057 ~ 67904020 (-)
LOC110532730 LOC106572695 coding downstream 490510 67628737 ~ 67633978 (-)
LOC110532738 LOC106572729 coding upstream 82 68138815 ~ 68151033 (-)
LOC110532739 LOC106572792 coding upstream 12538 68151271 ~ 68179048 (-)
LOC110532740 LOC106572797 coding upstream 43833 68182566 ~ 68193124 (-)
LOC110531250 LOC106572796 coding upstream 55611 68194344 ~ 68207179 (-)
LOC110532743 LOC106572740 coding upstream 82035 68220768 ~ 68244690 (-)
G834515 NA non-coding downstream 62911 68061252 ~ 68061577 (-)
G834409 NA non-coding downstream 306875 67816739 ~ 67817613 (-)
G834361 NA non-coding downstream 331131 67791089 ~ 67793357 (-)
G834388 NA non-coding downstream 368800 67754315 ~ 67755688 (-)
G834580 NA non-coding upstream 78312 68217045 ~ 68233316 (-)
LOC110531251 LOC105023852 non-coding upstream 107806 68246539 ~ 68252815 (-)
G834600 NA non-coding upstream 117023 68255756 ~ 68256003 (-)
G834603 NA non-coding upstream 119092 68257825 ~ 68258113 (-)
G834610 NA non-coding upstream 128163 68266896 ~ 68267119 (-)
LOC110532727 LOC106572699 other downstream 563911 67543067 ~ 67560577 (-)
LOC110531246 LOC106572701 other downstream 669088 67327762 ~ 67455661 (-)
G833521 NA other downstream 939245 67179249 ~ 67185243 (-)
G833029 NA other downstream 1535808 66587412 ~ 66588680 (-)
G834676 NA other upstream 236925 68375658 ~ 68376157 (-)
G835608 LOC106572767 other upstream 841150 68979883 ~ 69058294 (-)
G835808 NA other upstream 1292834 69431567 ~ 69431900 (-)
LOC118966109 NA other upstream 1944073 70082681 ~ 70084697 (-)
G836619 NA other upstream 2069945 70208678 ~ 70209625 (-)

Expression


Co-expression Network