LOC110532738 (LOC106572729)


Basic Information

Item Value
gene id LOC110532738
gene name LOC106572729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68138815 ~ 68151033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616851.2
TTCTCACATCTCACCCAAACTTGTCAAAGAGGGACCTCTCCATCAGACAGACAACCTAACCTCAGGATTCCTTCTCCATGCCCTCCTACTTCTACTGTCACCTTGGTACTGTATCTTTACATTCATTACCTTTAGGATGTACTCTGTTGTCAGGACCTTGCCTCAACGTTCACTTCACCTGGGAAGTCCCTGATGTCCCCAGCCTGTCTTGCAGAAGGAGATTCCAGAACTGGGAGACAGAGAAGTGGATGTGTTGGTGCCATCCAGgcAGACAATGAGAAAGGTGTGGCTGGCTGTGGTGGTTCTTCTGATACACTTCACTGAGCTGAGAGGATCTATGGGCCTGGATGGAAGATGCCTGTCTAAGCCCACCTGCACTGAGTGTCTGAGAAGCCTTGGCTGTGCCTGGTGTAAACAGAAGGATTTCCTGGCGCAAGGGGAGCCAGACGAGCGTCGCTGTGACAGGGAGGAGGCACTGAGAAAGAGACACTGCTCTGACGGACAGGTCCTGAACCCCCAGCCTGCAATACGGAGCAGGGCAGAGGAGCCAATGGGGAACGGGGTTCAGCTAGAGCCACAGAACCTCCACCTTAAGCTAAGAGTTGGCATGCCCCAGTCATTTGAGGTGAGGTTCAGGCGTGCAGAGGTTTATCCCATAGACCTGTACTACCTGATGGACCTGTCTTTCTCCATGAAAGATGACCTGAAGAATATTAGGAACCTGGGACGGGAGGTGGCCACTGCCATGAAGAACATCACCAGTGCTCTCAGGATAGGCTTTGGTTCCTTTGTGGATAAGGTGGCGGTACCCTACGTCAGTACAGTGGAGGCCAAACTGGCCAACCCATGCATTGAGGGGTACAAGAACCCCTGCCAGCCTGCCTTCAGCTTCAAACATGTACTGAAGCTCACTGAGGATGTTGAAGAGTTTGAGAGAAAGGTGAGCAAGCAGAGCATCTCCAGTAACCTAGACAACCCAGAGTCAGGCTTTGACGCCATCATGCAGGTGGCTGTCTGTCAGGATGACATTGGCTGGGGTAATGCAACTCGTATCCTGGTCTACACCTCAGACGATATCTTCCACCTGGCAGGTGATGGGAAGCTTGCTGGGATCTACCAACCTAACGACGGAAAATGCCACCTGAATAGCAATGGGCTCTATAATAAGGACACCGTTTATGACTATCCCTCAGTTGGACACCTATCTCAGGTCCTATCAGCCAATAACATCAGGCTGATCTTTGCAGTGACAGACCAGCATATTCAAAACTATGAGGCACTCAGTGAGATGATCCCCCAGTCGGTGGTGGGCCTCCTGGAGGATGACTCCAGCAACGTTGTTCAGCTCATCTCTGAGGCCTGCAACAACCTATTGTCCTCCATCCTCCTGGAGCACCGTGACGTCCCACCAGGCCTGGGGGTCTCCTACAACTCCCACTGTGGTGATGACAGGCTAGCTCAGGGGCAGGACAGAGGGGAGTGCAGTGATGTCAGAACCAATCAACAGGTCAATTTCACAGTTACTGTGACCAGCTCGAGCTGTCTGTCCAAGACAGAGTCTTTCATCATCAAAGTGCAGGGTATCAATGAAGAGCTGAGGGTTACCGTGGAGAcgctgtgtgactgtgactgtcagGACTCCGAGGAACAGTCATCCCAGTgtcatggcaatggaacattccACTGTGGTATCTGTAGCTGTGATTCAGGACACACAGGCCAGCGTTGTGAGTGTGAAACACAGCCGGACAAAGACACCAGTCTGGCCTTAGAGACCCTGTGTTCAcctgcacagacaaacagcacAGGCACACCACTGTGCAGCGGCCATGGGAGCTGTGTGTGTGGCCAATGTATCTGCTGGGGCCAACACAGGGGCCAACACTGCCAGTGTGACGACATTAGCTGTAACCGTCACAACAACATGATCTGTGGCGGTAATGGGAGGTGTGACTGTGGTAACTGTGAGTGTTTCCACAACTACACAGGCCCTGCATGTGAATGCTCTACCCTCACAGATCAGTGCCAGACCAGTAACGATGGAATCTGCTCTCACCGAGGACAGTGTGAATGTAATGAATGCCATTGTCACCCTGGTTTCTTTGGCAGCCACTGCACCAAGCCCCTGGCACCATGTGACACATACCGGGCCTGTGTTGCTTGCATGTTACATGAGTCAGCCATAAACATGTGTCACCATCCCTGTGGCTCTGCCAAGCCTATCCGCATCAATGGGACTCAATCATTCACCTGTCAGGATGATACTGTACGTTTTAATGTGGAACTCCTCATAAATACTGGTGACATCTTTGTCTACTACACAGATACTCCAAGAGGGATTGACCCATGGATTATAAACATGGGGAAGGCAGTGGTAGGAATCGTTTTACTGGGTGTCATCATGATAATAATTTACCGGCTGATGTTAGAAGTGTCCTACCAGCGGGAGCGTAGAAGTTTCCTGAAGGATAAGGAAAATATCTGCTGGGAAGACactcaaaatcCACTGTTCCAAGAGGCCAAGACAACATTCACCAACCCCATGCAAGTGTTGGAGCCAGATGCAGATTGTGCTACATCAACCTTtggaaaataaaacaaatgtgatGTGGTCTATTATGGCTCAGCTGAATTGTTGTAGGAGATATGATACTTGGTGGGATTTTTATGTGGCTGgagattttttgttgttaaatGTACATGTGAAAGAACCCAAGGAAAGTGGTGTTCTACTTTGTGTATGAATAGTAGCTTTCATAATCCTGCCAAAATGTAGAACATCACATCACACTATATCCAGTGATCCTCTGATATAAAATCAATGGTTTGGAGACGTTATAGCGACTCCCCCAAAAATGTGTTGCCATTCTTTGATAAAACGTACAAAATGTATTGTAGCCTACAATAAAAGTACAGTATTTCAAG
>XM_021616852.2
TTCTCACATCTCACCCAAACTTGTCAAAGAGGGACCTCTCCATCAGACAGACAACCTAACCTCAGGATTCCTTCTCCATGCCCTCCTACTTCTACTGTCACCTTGGTACTGTATCTTTACATTCATTACCTTTAGGATGTACTCTGTTGTCAGGACCTTGCCTCAACGTTCACTTCACCTGGGAAGTCCCTGATGTCCCCAGCCTGTCTTGCAGAAGGAGATTCCAGAACTGGGAGACAGAGAAGTGGATGTGTTGGTGCCATCCAGGTTTGTCAGTCATTTTTACAACTTAAAGTGCAACTCAAGTCCGAATCCAGCAGACTAAAAGTCACAAGGACACTACTGTAACCGCGACTCTTTATCATCGAACTCATGAAACCTCAAGAGCAGGTGACAGACCTGTCATACTAATGGGCCTGTTCAGAAGCTCTCAGgcAGACAATGAGAAAGGTGTGGCTGGCTGTGGTGGTTCTTCTGATACACTTCACTGAGCTGAGAGGATCTATGGGCCTGGATGGAAGATGCCTGTCTAAGCCCACCTGCACTGAGTGTCTGAGAAGCCTTGGCTGTGCCTGGTGTAAACAGAAGGATTTCCTGGCGCAAGGGGAGCCAGACGAGCGTCGCTGTGACAGGGAGGAGGCACTGAGAAAGAGACACTGCTCTGACGGACAGGTCCTGAACCCCCAGCCTGCAATACGGAGCAGGGCAGAGGAGCCAATGGGGAACGGGGTTCAGCTAGAGCCACAGAACCTCCACCTTAAGCTAAGAGTTGGCATGCCCCAGTCATTTGAGGTGAGGTTCAGGCGTGCAGAGGTTTATCCCATAGACCTGTACTACCTGATGGACCTGTCTTTCTCCATGAAAGATGACCTGAAGAATATTAGGAACCTGGGACGGGAGGTGGCCACTGCCATGAAGAACATCACCAGTGCTCTCAGGATAGGCTTTGGTTCCTTTGTGGATAAGGTGGCGGTACCCTACGTCAGTACAGTGGAGGCCAAACTGGCCAACCCATGCATTGAGGGGTACAAGAACCCCTGCCAGCCTGCCTTCAGCTTCAAACATGTACTGAAGCTCACTGAGGATGTTGAAGAGTTTGAGAGAAAGGTGAGCAAGCAGAGCATCTCCAGTAACCTAGACAACCCAGAGTCAGGCTTTGACGCCATCATGCAGGTGGCTGTCTGTCAGGATGACATTGGCTGGGGTAATGCAACTCGTATCCTGGTCTACACCTCAGACGATATCTTCCACCTGGCAGGTGATGGGAAGCTTGCTGGGATCTACCAACCTAACGACGGAAAATGCCACCTGAATAGCAATGGGCTCTATAATAAGGACACCGTTTATGACTATCCCTCAGTTGGACACCTATCTCAGGTCCTATCAGCCAATAACATCAGGCTGATCTTTGCAGTGACAGACCAGCATATTCAAAACTATGAGGCACTCAGTGAGATGATCCCCCAGTCGGTGGTGGGCCTCCTGGAGGATGACTCCAGCAACGTTGTTCAGCTCATCTCTGAGGCCTGCAACAACCTATTGTCCTCCATCCTCCTGGAGCACCGTGACGTCCCACCAGGCCTGGGGGTCTCCTACAACTCCCACTGTGGTGATGACAGGCTAGCTCAGGGGCAGGACAGAGGGGAGTGCAGTGATGTCAGAACCAATCAACAGGTCAATTTCACAGTTACTGTGACCAGCTCGAGCTGTCTGTCCAAGACAGAGTCTTTCATCATCAAAGTGCAGGGTATCAATGAAGAGCTGAGGGTTACCGTGGAGAcgctgtgtgactgtgactgtcagGACTCCGAGGAACAGTCATCCCAGTgtcatggcaatggaacattccACTGTGGTATCTGTAGCTGTGATTCAGGACACACAGGCCAGCGTTGTGAGTGTGAAACACAGCCGGACAAAGACACCAGTCTGGCCTTAGAGACCCTGTGTTCAcctgcacagacaaacagcacAGGCACACCACTGTGCAGCGGCCATGGGAGCTGTGTGTGTGGCCAATGTATCTGCTGGGGCCAACACAGGGGCCAACACTGCCAGTGTGACGACATTAGCTGTAACCGTCACAACAACATGATCTGTGGCGGTAATGGGAGGTGTGACTGTGGTAACTGTGAGTGTTTCCACAACTACACAGGCCCTGCATGTGAATGCTCTACCCTCACAGATCAGTGCCAGACCAGTAACGATGGAATCTGCTCTCACCGAGGACAGTGTGAATGTAATGAATGCCATTGTCACCCTGGTTTCTTTGGCAGCCACTGCACCAAGCCCCTGGCACCATGTGACACATACCGGGCCTGTGTTGCTTGCATGTTACATGAGTCAGCCATAAACATGTGTCACCATCCCTGTGGCTCTGCCAAGCCTATCCGCATCAATGGGACTCAATCATTCACCTGTCAGGATGATACTGTACGTTTTAATGTGGAACTCCTCATAAATACTGGTGACATCTTTGTCTACTACACAGATACTCCAAGAGGGATTGACCCATGGATTATAAACATGGGGAAGGCAGTGGTAGGAATCGTTTTACTGGGTGTCATCATGATAATAATTTACCGGCTGATGTTAGAAGTGTCCTACCAGCGGGAGCGTAGAAGTTTCCTGAAGGATAAGGAAAATATCTGCTGGGAAGACactcaaaatcCACTGTTCCAAGAGGCCAAGACAACATTCACCAACCCCATGCAAGTGTTGGAGCCAGATGCAGATTGTGCTACATCAACCTTtggaaaataaaacaaatgtgatGTGGTCTATTATGGCTCAGCTGAATTGTTGTAGGAGATATGATACTTGGTGGGATTTTTATGTGGCTGgagattttttgttgttaaatGTACATGTGAAAGAACCCAAGGAAAGTGGTGTTCTACTTTGTGTATGAATAGTAGCTTTCATAATCCTGCCAAAATGTAGAACATCACATCACACTATATCCAGTGATCCTCTGATATAAAATCAATGGTTTGGAGACGTTATAGCGACTCCCCCAAAAATGTGTTGCCATTCTTTGATAAAACGTACAAAATGTATTGTAGCCTACAATAAAAGTACAGTATTTCAAG
>XM_021616853.2
TTCTCACATCTCACCCAAACTTGTCAAAGAGGGACCTCTCCATCAGACAGACAACCTAACCTCAGGATTCCTTCTCCATGCCCTCCTACTTCTACTGTCACCTTGGTACTGTATCTTTACATTCATTACCTTTAGGATGTACTCTGTTGTCAGGACCTTGCCTCAACGTTCACTTCACCTGGGAAGTCCCTGATGTCCCCAGCCTGTCTTGCAGAAGGAGATTCCAGAACTGGGAGACAGAGAAGTGGATGTGTTGGTGCCATCCAGgcAGACAATGAGAAAGGTGTGGCTGGCTGTGGTGGTTCTTCTGATACACTTCACTGAGCTGAGAGGATCTATGGGCCTGGATGGAAGATGCCTGTCTAAGCCCACCTGCACTGAGTGTCTGAGAAGCCTTGGCTGTGCCTGGTGTAAACAGAAGGATTTCCTGGCGCAAGGGGAGCCAGACGAGCGTCGCTGTGACAGGGAGGAGGCACTGAGAAAGAGACACTGCTCTGACGGACAGGTCCTGAACCCCCAGCCTGCAATACGGAGCAGGGCAGAGGAGCCAATGGGGAACGGGGTTCAGCTAGAGCCACAGAACCTCCACCTTAAGCTAAGAGTTGGCATGCCCCAGTCATTTGAGGTGAGGTTCAGGCGTGCAGAGGTTTATCCCATAGACCTGTACTACCTGATGGACCTGTCTTTCTCCATGAAAGATGACCTGAAGAATATTAGGAACCTGGGACGGGAGGTGGCCACTGCCATGAAGAACATCACCAGTGCTCTCAGGATAGGCTTTGGTTCCTTTGTGGATAAGGTGGCGGTACCCTACGTCAGTACAGTGGAGGCCAAACTGGCCAACCCATGCATTGAGGGGTACAAGAACCCCTGCCAGCCTGCCTTCAGCTTCAAACATGTACTGAAGCTCACTGAGGATGTTGAAGAGTTTGAGAGAAAGGTGAGCAAGCAGAGCATCTCCAGTAACCTAGACAACCCAGAGTCAGGCTTTGACGCCATCATGCAGGTGGCTGTCTGTCAGGATGACATTGGCTGGGGTAATGCAACTCGTATCCTGGTCTACACCTCAGACGATATCTTCCACCTGGCAGGTGATGGGAAGCTTGCTGGGATCTACCAACCTAACGACGGAAAATGCCACCTGAATAGCAATGGGCTCTATAATAAGGACACCGTTTATGACTATCCCTCAGTTGGACACCTATCTCAGGTCCTATCAGCCAATAACATCAGGCTGATCTTTGCAGTGACAGACCAGCATATTCAAAACTATGAGGCACTCAGTGAGATGATCCCCCAGTCGGTGGTGGGCCTCCTGGAGGATGACTCCAGCAACGTTGTTCAGCTCATCTCTGAGGCCTGCAACAACCTATTGTCCTCCATCCTCCTGGAGCACCGTGACGTCCCACCAGGCCTGGGGGTCTCCTACAACTCCCACTGTGGTGATGACAGGCTAGCTCAGGGGCAGGACAGAGGGGAGTGCAGTGATGTCAGAACCAATCAACAGGTCAATTTCACAGTTACTGTGACCAGCTCGAGCTGTCTGTCCAAGACAGAGTCTTTCATCATCAAAGTGCAGGGTATCAATGAAGAGCTGAGGGTTACCGTGGAGAcgctgtgtgactgtgactgtcagGACTCCGAGGAACAGTCATCCCAGTgtcatggcaatggaacattccACTGTGGTATCTGTAGCTGTGATTCAGGACACACAGGCCAGCGTTGTGAGTGTGAAACACAGCCGGACAAAGACACCAGTCTGGCCTTAGAGACCCTGTGTTCAcctgcacagacaaacagcacAGGCACACCACTGTGCAGCGGCCATGGGAGCTGTGTGTGTGGCCAATGTATCTGCTGGGGCCAACACAGGGGCCAACACTGCCAGTGTGACGACATTAGCTGTAACCGTCACAACAACATGATCTGTGGCGGTAATGGGAGGTGTGACTGTGGTAACTGTGAGTGTTTCCACAACTACACAGGCCCTGCATGTGAATGCTCTACCCTCACAGATCAGTGCCAGACCAGTAACGATGGAATCTGCTCTCACCGAGGACAGTGTGAATGTAATGAATGCCATTGTCACCCTGGTTTCTTTGGCAGCCACTGCACCAAGCCCCTGGCACCATGTGACACATACCGGGCCTGTGTTGCTTGCATGTTACATGAGTCAGCCATAAACATGTGTCACCATCCCTGTGGCTCTGCCAAGCCTATCCGCATCAATGGGACTCAATCATTCACCTGTCAGGATGATACTGTACGTTTTAATGTGGAACTCCTCATAAATACTGGTGACATCTTTGTCTACTACACAGATACTCCAAGGATTGACCCATGGATTATAAACATGGGGAAGGCAGTGGTAGGAATCGTTTTACTGGGTGTCATCATGATAATAATTTACCGGCTGATGTTAGAAGTGTCCTACCAGCGGGAGCGTAGAAGTTTCCTGAAGGATAAGGAAAATATCTGCTGGGAAGACactcaaaatcCACTGTTCCAAGAGGCCAAGACAACATTCACCAACCCCATGCAAGTGTTGGAGCCAGATGCAGATTGTGCTACATCAACCTTtggaaaataaaacaaatgtgatGTGGTCTATTATGGCTCAGCTGAATTGTTGTAGGAGATATGATACTTGGTGGGATTTTTATGTGGCTGgagattttttgttgttaaatGTACATGTGAAAGAACCCAAGGAAAGTGGTGTTCTACTTTGTGTATGAATAGTAGCTTTCATAATCCTGCCAAAATGTAGAACATCACATCACACTATATCCAGTGATCCTCTGATATAAAATCAATGGTTTGGAGACGTTATAGCGACTCCCCCAAAAATGTGTTGCCATTCTTTGATAAAACGTACAAAATGTATTGTAGCCTACAATAAAAGTACAGTATTTCAAG

Function

NR:

description
integrin beta-7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616851.2 False 2925 mRNA 0.49 17 68138815 68151033
XM_021616852.2 False 3092 mRNA 0.49 17 68138815 68151033
XM_021616853.2 True 2922 mRNA 0.49 17 68138815 68151033

Neighbor

gene id symbol gene type direction distance location
LOC110532737 LOC106572728 coding downstream 82 68124488 ~ 68138733 (-)
LOC110531249 LOC106572727 coding downstream 58916 68028408 ~ 68079899 (-)
LOC110532734 LOC106572725 coding downstream 111024 67930820 ~ 68027791 (-)
LOC118966101 NA coding downstream 167370 67967813 ~ 67971445 (-)
LOC110532733 LOC106567001 coding downstream 234795 67795057 ~ 67904020 (-)
LOC110532739 LOC106572792 coding upstream 238 68151271 ~ 68179048 (-)
LOC110532740 LOC106572797 coding upstream 31533 68182566 ~ 68193124 (-)
LOC110531250 LOC106572796 coding upstream 43311 68194344 ~ 68207179 (-)
LOC110532743 LOC106572740 coding upstream 69735 68220768 ~ 68244690 (-)
LOC110531251 LOC105023852 coding upstream 95914 68246539 ~ 68252815 (-)
G834515 NA non-coding downstream 77238 68061252 ~ 68061577 (-)
G834409 NA non-coding downstream 321202 67816739 ~ 67817613 (-)
G834361 NA non-coding downstream 345458 67791089 ~ 67793357 (-)
G834388 NA non-coding downstream 383127 67754315 ~ 67755688 (-)
G834580 NA non-coding upstream 66012 68217045 ~ 68233316 (-)
G834600 NA non-coding upstream 104723 68255756 ~ 68256003 (-)
G834603 NA non-coding upstream 106792 68257825 ~ 68258113 (-)
G834610 NA non-coding upstream 115863 68266896 ~ 68267119 (-)
LOC110532727 LOC106572699 other downstream 578238 67543067 ~ 67560577 (-)
LOC110531246 LOC106572701 other downstream 683415 67327762 ~ 67455661 (-)
G833521 NA other downstream 953572 67179249 ~ 67185243 (-)
G833029 NA other downstream 1550135 66587412 ~ 66588680 (-)
G834676 NA other upstream 224625 68375658 ~ 68376157 (-)
G835608 LOC106572767 other upstream 828850 68979883 ~ 69058294 (-)
G835808 NA other upstream 1280534 69431567 ~ 69431900 (-)
LOC118966109 NA other upstream 1931773 70082681 ~ 70084697 (-)
G836619 NA other upstream 2057645 70208678 ~ 70209625 (-)

Expression


Co-expression Network