XLOC_026770


Basic Information

Item Value
gene id XLOC_026770
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50433551 ~ 50438278 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053128
cacacacaaagagaaccACAGGTCAATAGGGAGATTGCAAAATTCCAGCTTCTGCTTTAAAATTAACTGATTGAATTTTTACTACTAAATATCTACTTCAGaaatatacagacaaatgtaaaatacagtaaaacacactAAATCTGTTGAAATGCGTCGATCTAATGgcggttgagtttgcagctggatattattgggagatcgctgacaggaacagtgaacagctctgCCAGAGCTTGTCTGAAGCTCATAGGCCACCATTGAACACCAGAAACACCATTGAGCCTCGCTAGATCCTACTGTATGGGCACGCGTCcgttataaaacactcacaggacattaatttggacaactatgcagaTATAATGaatagttcataaaaaaatacacaaagagagacaTTCACTTCCACTTTACACGTAGTGTGTAAATGAACAGACTGTTGCCTACTAGTTGCAGATGCGATCatgacgcttttttttttttttttgagtttaaagaaaTCCATCACAGAAGAGGAGAAAGAGCATTACTTCTCatggcccacctgcaggatcgctgcCTGAGGCTCACCGATTAAGAATCCCTGCTTTATCGCATGAAATTAACCATTTGCAGTTGCGCCATCCAGTGGTCACAATTGGAAAAGCAGCttctttttattgaaaaattgcagcTCAATTTTATATTTCACAGAATCATGTTGTGGGCTGCATTAAACCTGTTTGCAGGCCTGATCCGGGCCGCGGGCCAaacgtttgacacccctggcttaaaccctttattaatccggggtcgccatagcggaatgaaccgccaacttatccagcacatgtgaAATAACACATTTGACACATGTGAAATTTTATTTCGTTTTacaacagaaatattttttttccaacaatttttttagcacattttaaaacaatatttttaataactaactctaataacttatttttatcattaatttatttagtcataaaataatattttattagttattttgcaaggtcactttaaagtgcaatttaaagcttTTTGAAAGCAATTTAAATAAACTGGGCAAAAATTGGTTACCTCAGCAAGTCACTGGaatgttaaaatagtttttactctAGTCtgtaagagaaaaaaaatcgACCTAAGCACTTTATTAACTATtaactttaaaattattaactattattattattattattattattattattattcaagttaaacaaaaagaaataagagTTTCTCTAGAATAAATATaggaaaccctgaaaaaaaatatttctgtgtaaaactcattcattcattcattcattctttctttttcttttcggcttagtccctttattaatctggggtagccacagcaaaatgaaccgccaacttatccaacatgtttttacgcagcggatgcccttccagccgtaacccatctctgggaaacctccacacacactcatacactatggacaatttagcctacccaattcacctttaccgcatgtctttgcactatGGGGTAAATTGgtgcaaactctacacaggacatgcaaactctacacagaaacggcaactgacccagccgaggcttgaaccagcgaccttcgtgctgtgaggcgacagcacaacctactgcgccactgcgtcgctctCTGTGTGAAACTGTacctgaaaaatatttttttaaataaaacattttcactgTAGGGCTAATAACTATTTTAGTGTACCATAACACCCCTTAAGTATTTCATTAACTCTAATCAATGTGCTTCTTAACCAATGAACCTGTGTTTTGATTTGTTTCTGTGCTATATAAATCtatgttttgtttttttt

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0098562 cytoplasmic side of membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0050254 rhodopsin kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053128 True 1839 lncRNA 0.36 2 50433551 50438278

Neighbor

gene id symbol gene type direction distance location
XLOC_026769 NA coding downstream 92505 50338780 ~ 50341046 (-)
XLOC_026768 arl16 coding downstream 155592 50271962 ~ 50277959 (-)
XLOC_026767 rasd2 coding downstream 255893 50175166 ~ 50177658 (-)
XLOC_026766 btr02 coding downstream 286391 50127726 ~ 50147160 (-)
XLOC_026765 cldnk coding downstream 305883 50123507 ~ 50127668 (-)
XLOC_026772 rcvrna coding upstream 3166 50441444 ~ 50443607 (-)
XLOC_026773 CR812464.1 coding upstream 290581 50728859 ~ 50749116 (-)
XLOC_026774 pmp22a coding upstream 422898 50861176 ~ 50865079 (-)
XLOC_026775 cdc42ep4a coding upstream 512925 50951203 ~ 50998577 (-)
XLOC_026776 sdk2a coding upstream 592389 51030667 ~ 51142942 (-)
XLOC_026761 NA non-coding downstream 495816 49934636 ~ 49937735 (-)
XLOC_026754 NA non-coding downstream 1015206 49406158 ~ 49418345 (-)
XLOC_026752 NA non-coding downstream 1060875 49186398 ~ 49372676 (-)
XLOC_026748 BX784040.1 non-coding downstream 1355672 49077762 ~ 49077879 (-)
XLOC_026777 NA non-coding upstream 821553 51259831 ~ 51273723 (-)
XLOC_026778 NA non-coding upstream 1007212 51445490 ~ 51448961 (-)
XLOC_026779 BX005299.1 non-coding upstream 1109855 51548133 ~ 51548250 (-)
XLOC_026780 NA non-coding upstream 1187325 51625603 ~ 51660056 (-)

Expression


Co-expression Network