LOC110531251 (LOC105023852)


Basic Information

Item Value
gene id LOC110531251
gene name LOC105023852
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68246539 ~ 68252815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989288.1
AGCACTAGTATGTTGGATTTGGGAGATGCAAAGAAGCAGTCTGTGTAGAGGTGTGTGGCATTTGACAATGGACTattgaataagagagagagagagagagagagagagaggggagagaccttgTAGCTTGATAGAAGCGGGGGACCGTAGCGACCGTGCCATGGAAGGGGCATACAACTCAAAGAAAGTGCTTCCTCAGCGGCCAGGATTTCGGCACCATAGAAAAGAGAACTATGTGTGCCGCGACGCCCTGTCCCGGCAGTCTACAGAGTGTAGTGAGGTCCAGGAGGCGAGCCAGTCCCAGCTGCAGCAGTCCAGGGTGAAGCTGAACGGCTCCACTGTGGAGACACCCAGTCACCACGACCTGCACCGCGAACTGTTGGTCAGCACCAAACGAGGTCTGTTGCCAGGAGAGAAGCCTGAGCTGAAGCGAGTCCTGGAACAGAGGAGGCTGGAGCAGCACAGAGAGCAGGAACTGGCTCTACAGCCTCCTCTGGAACTGGAGACGGAGCTACGCAAGAGACAGCAGATACTGCTGGAGTATGAGCAGGAGGAGATCAGGCGcagggaggagcaggagagagaagtCCCTGAGTTTGTACGTGTAAAGGACAACCTGAGACGCACACAGGTGTCTGGGCAGTGACGACCAGCTGACGCTCCGTCCCGTCCCGTCCGCCCCCGCAGCCTCTCACCACGGCTGCAGTCCGTTTCTGGTGGGGGAGGTGCACTTGTTCACCTTCCCCACCACAATGGTTCTGCCATCGCAATGAATCCATCCTCCTGTTTCTccctccaccagcctccactgcgaTCCATATCCTACAGCTATATGATGAGGATCAACTTCACTGCAGCAAGTTACTGAAAAGACTTCTCCTAGGACTGATATGCATCTCTTGCTGGACTGTTATACTGTGTGGAAAAaggccatttttatttatttgacctttatttaaccaggcaagtcagttaagaacaaattcttattttcattgacagGGTTGACtgcctgggttaactgcctgttcaggggtagaacaaccttgtcagctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccactaggcctaccctgccaccccaaataaGCAATGTAGGAAAACCAGTCAGTAGGTTTTATATAAAGAATGTGAGTGAaaatacataaactcagcaacaaaagaaacatcctctcactttcaactgcatttattttcagcaaacttaacatgtctaaatatttgtatgaacataacaagat
>TU949159
TACAGACAGTCTTCTCCTCGGCGACAGCACTAGTATGTTGGATTTGGGAGATGCAAAGAAGCAGTCTGTGTAGAGGTGCTTCCTCAGCGGCCAGGATTTCGGCACCATAGAAAAGAGAACTATGTGTGCCGCGACGCCCTGTCCCGGCAGTCTACAGAGTGTAGTGAGGTCCAGGAGGCGAGCCAGTCCCAGCTGCAGCAGTCCAGGGTGAAGCTGAACGGCTCCACTGTGGAGACACCCAGTCACCACGACCTGCACCGCGAACTGTTGGTCAGCACCAAACGAGGTCTGTTGCCAGGAGAGAAGCCTGAGCTGAAGCGAGTCCTGGAACAGAGGAGGCTGGAGCAGCACAGAGAGCAGGAACTGGCTCTACAGCCTCCTCTGGAACTGGAGACGGAGCTACGCAAGAGACAGCAGATACTGCTGGAGTATGAGCAGGAGGAGATCAGGCGcagggaggagcaggagagagaagtCCCTGAGTTTGTACGTGTAAAGGACAACCTGAGACGCACACAGGTGTCTGGGCAGTGACGACCAGCTGACGCTCCGTCCCGTCCCGTCCGCCCCCGCAGCCTCTCACCACAATGGTTCTGCCATCGCAATGAATCCATCCTCCTGTTTCTccctccaccagcctccactgcgaTCCATATCCTACAGCTATATGATGAGGATCAACTTCACTGCAGCAAGTTACTGAAAAGACTTCTCCTAGGACTGATATGCATCTCTTGCTGGACTGTTATACTGTGTGGAAAAaggccatttttatttatttgacctttatttaaccaggcaagtcagttaagaacaaattcttattttcattgacagGGTTGACtgcctgggttaactgcctgttcaggggtagaacaaccttgtcagctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccactaggcctaccctgccaccccaaataaGCAATGTAGGAAAACCAGTCAGTAGGTTTTATATAAAGAATGTGAGTGAaaatacataaactcagcaacaaaagaaacatcctctcactttcaactgcatttattttcagcaaacttaacatgtctaaatatttgtatgaacataacaagattcaacaactgaaacataaactgaataagttccacagacatgtgactaacagaaatgtaataatgtgtccctgaacaaaatgggggggtcaaaatcaaaagtaacagtcagtatggccaccagctgcattaagtactgcagtgcatctcctcctcatggactgaaccagatttgcccattcttgctgtgagacgttatcccactcttccaccaaggcacctgcaagttcccatagatttctggggggaatggctctatccttcaccttccgatccaacaggtcccagacgtgctcaatgggattgagatccgggctctttgctggccatggcagaagtgacattcctgtcttgcaggaaatcacgcacagaatgagcagtatggctggtggcattgtcatgctggaggt

Function

NR:

description
protein FAM107B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989288.1 False 1284 mRNA 0.50 5 68246947 68252790
TU949159 True 1527 lncRNA 0.49 6 68246539 68252815

Neighbor

gene id symbol gene type direction distance location
LOC110532743 LOC106572740 coding downstream 2257 68220768 ~ 68244690 (-)
LOC110531250 LOC106572796 coding downstream 39768 68194344 ~ 68207179 (-)
LOC110532740 LOC106572797 coding downstream 53823 68182566 ~ 68193124 (-)
LOC110532739 LOC106572792 coding downstream 67899 68151271 ~ 68179048 (-)
LOC110532738 LOC106572729 coding downstream 95914 68138815 ~ 68151033 (-)
tlr5 tlr5 coding upstream 59011 68311801 ~ 68315049 (-)
LOC110532747 LOC106566980 coding upstream 168891 68421681 ~ 68444643 (-)
LOC110531254 LOC106572752 coding upstream 216101 68466591 ~ 68546684 (-)
cyp2k5 cyp2k5 coding upstream 336904 68589694 ~ 68603072 (-)
LOC110531255 LOC106572758 coding upstream 373230 68626020 ~ 68641602 (-)
G834580 NA non-coding downstream 13631 68217045 ~ 68233316 (-)
G834515 NA non-coding downstream 185370 68061252 ~ 68061577 (-)
LOC118966101 NA non-coding downstream 275505 67967813 ~ 67971445 (-)
G834409 NA non-coding downstream 429334 67816739 ~ 67817613 (-)
G834361 NA non-coding downstream 453590 67791089 ~ 67793357 (-)
G834600 NA non-coding upstream 2966 68255756 ~ 68256003 (-)
G834603 NA non-coding upstream 5035 68257825 ~ 68258113 (-)
G834610 NA non-coding upstream 14106 68266896 ~ 68267119 (-)
G834611 NA non-coding upstream 15324 68268114 ~ 68268337 (-)
G834616 NA non-coding upstream 26593 68279383 ~ 68283591 (-)
LOC110531249 LOC106572727 other downstream 207986 68028408 ~ 68079899 (-)
LOC110532727 LOC106572699 other downstream 686370 67543067 ~ 67560577 (-)
LOC110531246 LOC106572701 other downstream 791547 67327762 ~ 67455661 (-)
G833521 NA other downstream 1061704 67179249 ~ 67185243 (-)
G833029 NA other downstream 1658267 66587412 ~ 66588680 (-)
G834676 NA other upstream 122868 68375658 ~ 68376157 (-)
G835608 LOC106572767 other upstream 727093 68979883 ~ 69058294 (-)
G835808 NA other upstream 1178777 69431567 ~ 69431900 (-)
LOC118966109 NA other upstream 1830016 70082681 ~ 70084697 (-)
G836619 NA other upstream 1955888 70208678 ~ 70209625 (-)

Expression


Co-expression Network