LOC110532746 (LOC106572736)


Basic Information

Item Value
gene id LOC110532746
gene name LOC106572736
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68327935 ~ 68347188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021616867.2
GGTAACGGTCACCGCAAGAAAGTACTAGGGGTGGGTGTGACGTCATAGCCCCAGAGCCGCCGACCATGTTTCGGGAAGTTTGACTGGGTTGAAAAAATTTACGAAACGAAAACTGTTGAACGATGGGGATTATCAGAGAACTCCGAAACAATCTGGCTCTCTCCGGACTTGTAGACGATGAGAAATTTCAGCGGAACGTAAAATATGATTGAAATATATAATTGATCTGAACTCCTACAAAGGCAACCGACTTTCGCGCGTTCATATATTTTCGCGGCTATTCATTTTTTCGTCGAATAGAATAATTGAGAAATAGACTGATATAACGGTATCACTGCCAAGTTTTTCCACATGAAGGCCCATTCTTTCCCTTCTATCGTTAAGTCGCATCAGACGAGCTGCCTCGCATGAGACACCTCGGGGAGAgggttctgctctactctgccaGCTCGGGGAATCAGGATGACAAAACCCAAAGTTGGACGAATTTTCCTGGCGACATGCGTTGGGTCACTTTTCATGGTCATATTGTACTTTCAGAACATCACAAGGCCAGCCGTGGAGCAGTTTGGGGGGAAGGGCATCGGCCCGGGGAAGACGAGGAGAAGTCCACTACAGACCCTCTACAACGAAGACCAGttggACATGTCTGCTGCGCAGGCATCTCTGCGTGGTCGGCGGGAGCTGCTGGAGGAGGCGTGTCTCACCCACACCAGGAAGCGGCGGGTGTTGACCCCAGACGACCTCCGCCACCTCATAGTAGACGATAAGCACAGTCTGCTGTACTGCTACGTCCCCAAGGTGGCCTGCACAAACTGGAAACGGGTCCTCATGGTCATGACAGGGGACGGACGCTACCGCGAGCCCCTAGCCATCCCCGCCAATGAGGCCCACGTGGCAGGCAACCTGCGCACGCTGTCAGAGTACTCCACCGGCGAGATAAACCACCGCCTCCGCAGATACCTGAAGTTCCTCTTCGTTCGGGAGCCCTTCGAGAGGCTGGTGTCGGCCTACCGCAACAAGTTCACCCGCAGCTACAACACGGCCTTCCACAAGCGCTACGGCACCAAGATCATCCGCCGACACCGGCCCCACCCTGAGCCGGAGGCGTTGGAGCAGGGCAACGATGTCTCCTTCAAGGAGTTTGTGCAGTACCTGGTGGATCCccgcacacagagagaggagccctTCAACGAGCACTGGGAGCGGATCCACTCACTGTGCCACCCCTGCCTCATCCACTACGACGTGGTGGGGAAGTATGAGACTCTGGAGCAGGACTCCCGCTCTGTGCTGCGGCTGGCCAGCGCTGACGGGGAGGTCCACTTCCCCACCTCAGGCAAGAGCACCAGGACCAACGGGGACATGGCGGCTCAGTTCTTCCACAACATCAGTCCCTTCTACCAGAAGAAGCTGTACAACCTTTACCGCATGGACTTCCTGTTGTTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGGGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTACTCCAACCCAGAGTACTTGAAGTTTAGGTGAGGGCGGCTCTCTCCATGTCAACTGTGATTTAGTAATCAATCTGTTTTGGGTCTGGAATTTCTAATCAATCTGGGTGGGTGTGTAGTGGTGTTCAGATGTTATTGGTAAGTGCCTTACCAGTGCCTTCCCTGCATTGTTAGATGTATGACCTTTATTATCAAGGGTGACTCTGGGGGCACTGTTCATTCCTAGGACTCTTCATGTGGCCTATATAAGATAGAAGCAGGTTCTTCTTTTTGAGGGTTGTGAACCTTCCTCTTTATTTATACAATTGTAAGTATTTATTGTAATTATAGACTGAGTCATTGGACACTTGAGTGAATTGTGGGAGAACATTCCATTTATGCATTTCTCTCTGCTTGCACATACAGCGTGTTTTCTTGACTCTTGCACATCTTATGTAGCCAAAATGTTCCTCTGGGGACAAAGGGTGTTGTAGAACTTACATAAACCAACAAACAAAAGAAATCAGTCTACACATTCAAAATCATGAAAAGGCTGCCATTTACTCACAGAGTTATGAGGTTTGCAAAGACCCAATGTGAATACATTTTGAAAACTCATTTAAATGTAAATGAGTTGATAAATCTAACACGGTGGTAAGAAATAATTGCCTTGGTCTTGGTGGCCACCTGTTCGTTGATGTTATGCAAGCCACAGGTTGCTAGTAAAAATGTACTGATAAACAATGTATGCTGGGTATAGGAAGCCTGGCAGGCATGATGACTTCAGACAGGGAGTTGATGACAGAAATGCCACATGCTCTGTTTGGCAGAGTCACCTCTTTCTTTAGCTCACGGCAGACTGAGCAAACAGCACATAGCTGTGGTTTGGTCCAAGGCTGCCCTTCGTCAGAGAGTTCCTTGTTGAACTGTGGACAGCCACGTAGGGCTAACTATCTACACGGGCACTACAGGTTAAAACCAGGTAAGCCTTCTGGTAAAAGACAAATATTCTATTGAATTTACACCATGCTTACAAGTGCAATATTTGTCATGACTTGATATGAGCTGTATATGAAGACATTTAATATCACATGTTTATGCCTGTTGATGTTGTGCCTCAACAGTTTGCCCATAAAAATGGTCTATTTACCGTTTACTGCTACAACAACATTAATTTGCATCAATTGATGCTATAGGCCAGGGTTACCCAACTGGTGGCCTGTGAGCTGAATTTGGCCCGAGGGTGATTTTTATTTGGCTCCCCAAGTTtgagcaaaaaataataatagtttaaacaacaacaaaaaaatgaaataatttgCAGGACACAAAGAAAGTGTAAAAACACGAGCAAATTAGCTCTAAGTGATTTTAATTGAGGAAATCTGTTTTCCTACGCCTAGTGGAGAGATATATGTGATCGTATGAAAATGAAAGCATGGTTTGAAATGATTTTGTTTTAGTCAAATAATATATATGTTTGGGCTTCTtccagtctacaaatgatttctAATTATGTTCCGccccccctgaccatccgctcaaaaATAGATCAGCCAATGGCTGAATCTAGTGGACGATCCCTGCCTATAGGCCACGTGTTGAGGTAGCGGTGGTGTGGAGGACATGTTCTTTGTGTTGGAAACAACCAAATACTTTACAACTTTCAAATTGTTGCCTTGAAATAGAAGTAGACTCTCGTCTGAATGAATTTGCTCCTAATGTTAACGAGCCATAATCAAGTTGTGTACAGCCTGTTTCAGACAAACACCCATAGACTGTGAATAATGTCCGGAGAGAACACAGGTGTTTACCAATAGAGTTGTCTCGGTTCATGAACTCCTCTCAGCTGGGAAGTGGCTGCTCTAGAACATCCACATACAACATTTCACCGTTGTGGACAAGTCGTCTGGAAAACCTGGTATTTAGCCTACAGAGAAGTGTGTATTTATTCTACCAGTACTACAGTCTGGTTAATTTTCTCTTACTTTTGTCTGATATGAGAGTACCCTTATGTTTATTTTGCAAATTGTATTTTATAGTAATAATATCCACCATTTAATATACATGATATTTTTTACACTAATTTCTCAACAACCAAGCACCCAGTAGACAGTGATGTCATCGTGTATTGTCATTACCGGTTATACTTCAAAACCGTCATAGAAGTTTCCTTTTTTTCATGTTTCCTTCCTgatttgcctagtaaaataaaggttaaataaaggttaaattaaaaaa

Function

NR:

description
carbohydrate sulfotransferase 11-like

GO: NA

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021616867.2 True 4386 mRNA 0.46 3 68327935 68347188
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110532744 p38b coding upstream 20268 68273401 ~ 68307667 (+)
LOC118966196 NA coding upstream 68627 68258913 ~ 68259946 (+)
LOC110531252 NA coding upstream 69193 68257720 ~ 68258742 (+)
fance fance coding upstream 108975 68213202 ~ 68218960 (+)
LOC110533037 NA coding upstream 115609 68210179 ~ 68212326 (+)
LOC110531253 LOC106572751 coding downstream 103896 68451084 ~ 68470509 (+)
LOC110532749 LOC106572763 coding downstream 216948 68564136 ~ 68582410 (+)
LOC118965941 cyp2k5 coding downstream 272423 68619611 ~ 68625512 (+)
LOC110532752 NA coding downstream 360522 68707710 ~ 68710615 (+)
LOC110532753 LOC106572761 coding downstream 393544 68740732 ~ 68765014 (+)
G834244 NA non-coding upstream 1525 68326118 ~ 68326410 (+)
G834241 NA non-coding upstream 6294 68321312 ~ 68321641 (+)
G834240 NA non-coding upstream 9044 68318597 ~ 68318891 (+)
G834215 LOC106572737 non-coding upstream 36091 68290817 ~ 68291844 (+)
G834235 NA non-coding upstream 39789 68287215 ~ 68288525 (+)
G834255 NA non-coding downstream 1942 68349130 ~ 68349411 (+)
G834258 NA non-coding downstream 4113 68351301 ~ 68351533 (+)
G834259 NA non-coding downstream 4552 68351740 ~ 68352241 (+)
G834261 NA non-coding downstream 6909 68354097 ~ 68354425 (+)
G834694 NA non-coding downstream 70195 68417383 ~ 68420746 (+)
G834228 NA other upstream 59527 68268037 ~ 68268408 (+)
G834099 NA other upstream 278713 68048913 ~ 68049222 (+)
G833906 LOC100194703 other upstream 706569 67620878 ~ 67621366 (+)
G835266 NA other downstream 892408 69239596 ~ 69244478 (+)
LOC110532770 LOC106572808 other downstream 913983 69261156 ~ 69267394 (+)

Expression

LOC110532746(LOC106572736) Expression in all Baseline Samples

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LOC110532746(LOC106572736) Expression in each Bioproject

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LOC110532746(LOC106572736) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network