LOC110531253 (LOC106572751)


Basic Information

Item Value
gene id LOC110531253
gene name LOC106572751
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68451084 ~ 68470509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986967.1
ATGGATGCTCAAGAAGAGATGTCTGTGAAGGATGCCGCGGAAGCTGAGTCCCCGGACAGCATCGAAGACAGACCCCCAGCAATTTATAAGAAACAAACAGCCTTCAGACTAGCAGGTCCTCTCATCTCCTGCAGTGACACCAAGCCTCCAGTCTCAGagagacagagagaagagacgaCAGCGAGGAGGAATCCCTTCAAACTCCCGGCAGACAACATCTTCCTCCTGAGAAACAAGGAAAATGAACAAAGGAAGCTGGAGCGCCAGCAACAGAAGACGCTGAAGGTCCATGAGAAGTCCACCTATGCTGGGAGGATACAGGCCAAGCAGGCTAACCTGAGGCAGGAGCTGAGGCAGGGGCAGAATGAGGTGTACTCCACCTCCTGCAGCAAGGCTGTGTCCACCCTCAGGGATGATCCGGCATGGAGGAAAGCTGCCACCCTGAACTCCAATGACAGGGAGAATATTAGTGAGTACATCACTAAGAAGAGAGAGATGTTTCTTATTGAGTACTCCCTGGCTGTGAAGAGGGAGGTGATTCACAAGCTGGCTGAGGTGGCCACCAAGGAAGAGAACAGGCTGCAGCAGGCGGAGACATTTCTGGACGAGGACACGGCCATGTTTGACGAGTTCCTCGAGGAGAATGACAAGAACTCAGTGGAGGCAATCAAAATTGCTGAACACGAGACCAAAGCCAAACTGGAGAAGGTTGCAGAGATCAAGAGGATCTCGGGCAAAATGGTGGCAGTGAAAAGTGACATCTCCAAGAACGAGGAGATCCTGAAGGAGTACACCCTGTACAATGGCTTCCTGCTGAAGCTGTCCCCTACAGAGTGGCAGGAGAGACAGCAGGCTCGCCGGGCCATGGTGGACAAGATCAAAGCTGCCATCAAGATGAGGGAGGCTCAGCTAGCCGAGCCAGCCAAACCCGGCAGACGTAAAGAGAGTATGGCCAGGGACCTGCCTCCTGTATGTGACCCCAGGACTCCCCAGAGACAGAGTATGATGGGAACCAGAGAGAGCATCAAGCCGAAGGAGGTTACAGTACCAGTGGATGAGAGCAAACTGCCTGAATATGAGGAGCCGGAGCTGTTCTTCACTGACCCTCAGCAGCTGTTGGACCTGCTGACAGACCTGGAGAAGCAGAACCTGACTCTGATCCAGAactccagagagacagaggagaccaTGGAGGAGTTCAAACACACTTTGGTCAACACTCGCAACAAGATGGACCAGGAGACAGAGCAGCTGACCCAGCAGATTGACATAATTACCCATGCCatccagagagagaaggacactgCTGCTGAGCTGGAGCTCAAATCGCGACTCTTCTCCTTTGGGAAATACAAGGCAGAGGACCAGGATGTGATGCTGGAGGCCCTGGGCAGGAAGGTGGCCGAGGTGTACAGGAGCTATGCGGGGGAGAGTGGGGCCAACCTGACCACGCTACAGATGCTGACCAACATCGAGGGCCACCTGGGGGAGTTGCTGGAGAACGTGGAGTTGGTTCCCAAGGACCGTGTGCTCATGGCCGAGAGGgccaaggagaaggagaggagactcaGGCTAAGGGAGGAGAAGGTTCGTGTGCAGAAGATGCAGCAAGAGGAGCGCCTGCGTAAAGCCCTGGAGAGAGCTCAGGCTAACACCAAGAGACCTGTGAATCAAACACCCaacaatacaaaacacaacacactaaATACGGGGAAGAAGCTGATGCCTCGCTCACTACCTCCGGTGACTGAGCAGTTAGTGAACAATGATGACAGAGACACTGACACGGAGAAGGAGAAGCAGCTCTACTTCTTCACCTGAACCCCTCCAGCCTAGACCATGGTCCCTGATGGATCTTCAGTAGTTGATGTGTTCTGTATGTTAATGTTAAATTAAAATTCAATTGTCGATATGTGCAGATTATACTTTGGAGAGTTGATACTTTGCCAGTACATTTTCACTGCCACATGGTGGCATCAAGAGATCCTGAGATCAGGAGTATGTGTAGAGGCTAAAGAAGAAGACATCATGAACGGTCCTGTAAACTGAAAGTACAGACCTCCAGAAATACTGAACACAAATACTTCCACACACTTTGGAACTCTGTTTTAA
>TU949373
CAGAAATACTGAACACAAATACTTCCACACACTTTGGAACTCTGTTTTAAAGTGCTTTAATGTCACCTGATGCGTTCACGTAAAGCTGAGTTGGTTCAGGATTCAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTATAGACATTGTGGCTTTTAAAggcaatttccgattgagccgacatacgcAGCGTTTACTGTGAATGGGATCTCTACGaacgtgggaacattgccttttaaAAACCCACAATGCCTAAAATCCCAAGATCGGTTTGAATCCCAGCCTTAGGTATCTGAAGACCACGGGAATGGATCTCAAGGCATGCATACTGTGTGAATTTCAACATCTTAACCAGACCGCCAACTCACAGACATGACAGGTTTACAAAAAGGTTTATTTTATGTGCATTCATTTAGCCTTTTACATTACTACGGGCTCTCTTTTGATAGAGTTCCCTCCCACCTTCTGTAGCCTATAAATGTGTAATAATCGCTCAAATTAAATCAAGATGATTGAATCATATCCAATATGGTAAACTAAAGTTATTCACATGAGTTGGCTGTCCTTGGTTGAAATACATGAGTTGGCTGTCATTGGTTGAAATACATGAGTTGGCTGTCAATGGTTGAAATACACGAGTTGGCTGTCATTGGTTGAAATACACGAGTTGGCTGTCATTGGTTGAAATACACGAGTTGGCTGTCCTTTTTTGAAATGCACAATCCATTTGACACAAATAACAACGGATTACTATAGGTTTACGTTTACATTCATAACACATCAAAATGTGAAGACACCCTGATAGAAAAAGTAACCTTCTACTTCCTAGCGTAGTACTGTAACAAAGTCATCATTTGATGTTCCTATTTACAATGGATGGACATTCAAATCATATCCATTGCATTATACATCTGCATAGAGAGACAACATAGTATTTACATTAATTTATCTATTCACACGTGTTGTTCTAAACACTTAACTAAATCCCATGGCGTAAAACATTTAGCATTCTCTGTTTGAAGGAAATTAAGTTGATCAAAAGGAGAATGTTAAGTAACACAAGTGAAATGCATattaagatatatatattttcagcTGTAGTGGACAGTGACCAAACATCATCATCAAACACCAAGAACAAGGATTGTATAGTATAAGTCATGCGAACTCTCCTCTTCACTGCACAAGACAAGGTATGATCAAGAGACGCACAACTAActgtggcacacacacatacatccctAGCCACACTGACAAGACATGGCTTTGCAAAGTGAGGGATTGTAAGGCCACACAACAGTCCACATATTCAGTTAACCAGTATAGCATGAGCCAGGGTCAACCCAACCTCACCGTAAAGGAGCCAGGGTCAACCTCACCTCACCGTACAGGAGCCAGGGTCAACCTCACCTCACTTCACCGTACAGGAGCCAGGGTCAACCTAACCTCACTATACAGGAGCCAGGGTCAACCTAACCTCACCTCACCATACAGGAGCCAGGATCAACCCAACCTCACTATACAGGAGCCAGGGTCAACTTCACCTCACCTTACAGGAGCCAGGATCAACCCAACCTCACTATACAGGAGCCAGGGTCAACCTCACCTCACCGTACAGGAGCGTTATCAGCTCAACACATCTACCAGGAAATCATGTCAGTCTGTAGCATCCTCATACTGTACTGAGCTCAGAAGAGCCTCAATTAGCAGTGACCGCTAGGTGGTAGAGCTGAGCCACTCTACAGAACAGTTAGTTGAAAACATTCTTGAATTATTGCTGTATCTTAGTGATTACCTCAGTTTCCATTCCATCTGATACTGTGCAAATAACATTGAAAGTAGGATGTACAGTGTTCTCAACATTGGCAACGTGAGGGGGTGGTCAACTCCTactggtgtaaaaaaaaatgctttgCTGTATACATTTTAGGTTGGTGAACATTTTGAGATGGGGATTCTAGTATCCTGCGAGTTTTTTCTGACATGCTTTTTAATGAGGTCACAAAAAGGAGATTTAATGACAGTGTATAATTGATTGTAATGCTTTGATGTCAGAATCAGAACCATAGAAACTATGATCAGAACTAAGCCTGGAGCTTCAGGTGGCAACAGGGTTGCTAACCTGATTTCTCCAATGTATTATGACAACAAGAAATCCAAGAAATCTTTCCTCTTTCATTTCtgacaaacacacaaaaaataaaaacatcaacCAAACCGCTGGAGCCCTACTGTCACAGCCCttaacctcccctccctccctatctctcctcaACCTCCCCCTACCTCAtcggtctccctctccctcactgcaGGAGGGCACTGAGACTGGCATTTCTGTTCCAGCAGGGTGTAATCTGCGCCCAGCATCATCCCATGCTGGGCAGGATGGTATGATAGACAGGGGGGTGAGAATGACTGGCGCTAACGAACATGTGACCTGGGCCCCATGCCAGCCGTGTCAACACTCTCCAGGGCCACATGTTCAGTTGCCAAACATTTCAGATAGAAATGCCTTGAATAGAGCCAACATGATTGCTTGTTTTACATGTCGGAAAGGCATGCTTGTTCTACATAACATATTTCTATCCGAACGTTCCAAAACACTGTGTCCTGCTGAACCGACCCCTAGTTCATGACACAAGACAAGCTTCAGATAAatcatcaacaaaacaaacacataatAAAGTTTGCCCAGGATAACCACTTCATTCACCTCCCCAAAGACAGTCAACTGCACTCATGTGTTTTGGTGCTTGGTTTTTATAAATCACTCTGAGTCATTTAGTTTCAGAAAATCAAATGAAAGGCAACAGAAAACACCCATTGTGCATTATAACATGACactcagagagagggagtggatacAGTAATTGAAGAAGATTTTGTGTGGAGGTATGGGCTGAAAGCAATATGTCAAGTTTGTTTAGCAAATCAATAAATCAGCAATGATCATTGATTGAAGTTTTTTTACCTGTTCTCTCCAGTTGATGGCTAAGCTGCTTTGCATATACAGTGCCCtcagaaattatttttccacattttgttgtgttacaaagtggggttaaaatggatttaattgtcattttttatttatttatttatttaaattgactgatttccttatttgaactgtaactcagtaaaatctttgaaattgttgcatgttgcgtttatatttttgttcagtatattttctaCATCAATAACTTTCACAGACTGTAAACTCCTCCCTCTGCATATGCTTGTGAACGTTATAAGTGTACAGCATGGCATCACGGCATAGTCAGTTATATTTCTCCCTTCTCTTCAGAAGTGACGGTGCTTGTGGCTATTGCATTGGGTGCTCAATCTACCCGCTCCTACGTGTTCAATggcacaatgtatgaatacaTTCATTCTATGTGTAGATATAAACTGTGTTAAGCATGCGCAGTTGTAGGGGGAGGCGACATCGGCTTGCAATGAAATGGCAATGGCATAGGGTtaaaagagatgagagagatgtcaagtgtgtgtgtgtgtgtgagcatcaAATATGTGTAGACccaagggggggtgggggggggggggttgaaaggTGCTGTCCCACTACAGTGGGGGTGTCAGATGTGCCTGTGGAGGTCGGGCAGGTCTGAGGTGGTGAGGGCGGGCCGGGGCTCGATGCCTCTGGTCTTCATGAACCCCAGCAGCTGCTCAGGGATCTCAGCCAGCACGTCCTTAGCCAGCCGGGCCATGCTCAGGACCTGGTTCCCCGACCGGTCCATGTAGTC
>TU949377
CAGAAATACTGAACACAAATACTTCCACACACTTTGGAACTCTGTTTTAAAGTGCTTTAATGTCACCTGATGCGTTCACGTAAAGCTGAGTTGGTTCAGGATTCAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTGTGGGCATTACAATCCAATACATATGTTATAGACATTGTGGCTTTTAAAggcaatttccgattgagccgacatacgcAGCGTTTACTGTGAATGGGATCTCTACGaacgtgggaacattgccttttaaAAACCCACAATGCCTAAAATCCCAAGATCGGTTTGAATCCCAGCCTTAGGTATCTGAAGACCACGGGAATGGATCTCAAGGCATGCATACTGTGTGAATTTCAACATCTTAACCAGACCGCCAACTCACAGACATGACAGGTTTACAAAAAGGTTTATTTTATGTGCATTCATTTAGCCTTTTACATTACTACGGGCTCTCTTTTGATAGAGTTCCCTCCCACCTTCTGTAGCCTATAAATGTGTAATAATCGCTCAAATTAAATCAAGATGATTGAATCATATCCAATATGGTAAACTAAAGTTATTCACATGAGTTGGCTGTCCTTGGTTGAAATACATGAGTTGGCTGTCATTGGTTGAAATACATGAGTTGGCTGTCAATGGTTGAAATACACGAGTTGGCTGTCATTGGTTGAAATACACGAGTTGGCTGTCATTGGTTGAAATACACGAGTTGGCTGTCCTTTTTTGAAATGCACAATCCATTTGACACAAATAACAACGGATTACTATAGGTTTACGTTTACATTCATAACACATCAAAATGTGAAGACACCCTGATAGAAAAAGTAACCTTCTACTTCCTAGCGTAGTACTGTAACAAAGTCATCATTTGATGTTCCTATTTACAATGGATGGACATTCAAATCATATCCATTGCATTATACATCTGCATAGAGAGACAACATAGTATTTACATTAATTTATCTATTCACACGTGTTGTTCTAAACACTTAACTAAATCCCATGGCGTAAAACATTTAGCATTCTCTGTTTGAAGGAAATTAAGTTGATCAAAAGGAGAATGTTAAGTAACACAAGTGAAATGCATattaagatatatatattttcagcTGTAGTGGACAGTGACCAAACATCATCATCAAACACCAAGAACAAGGATTGTATAGTATAAGTCATGCGAACTCTCCTCTTCACTGCACAAGACAAGGTATGATCAAGAGACGCACAACTAActgtggcacacacacatacatccctAGCCACACTGACAAGACATGGCTTTGCAAAGTGAGGGATTGTAAGGCCACACAACAGTCCACATATTCAGTTAACCAGTATAGCATGAGCCAGGGTCAACCCAACCTCACCGTAAAGGAGCCAGGGTCAACCTCACCTCACCGTACAGGAGCCAGGGTCAACCTCACCTCACTTCACCGTACAGGAGCCAGGGTCAACCTAACCTCACTATACAGGAGCCAGGGTCAACCTAACCTCACCTCACCATACAGGAGCCAGGATCAACCCAACCTCACTATACAGGAGCCAGGGTCAACTTCACCTCACCTTACAGGAGCCAGGATCAACCCAACCTCACTATACAGGAGCCAGGGTCAACCTCACCTCACCGTACAGGAGCGTTATCAGCTCAACACATCTACCAGGAAATCATGTCAGTCTGTAGCATCCTCATACTGTACTGAGCTCAGAAGAGCCTCAATTAGCAGTGACCGCTAGGTGGTAGAGCTGAGCCACTCTACAGAACAGTTAGTTGAAAACATTCTTGAATTATTGCTGTATCTTAGTGATTACCTCAGTTTCCATTCCATCTGATACTGTGCAAATAACATTGAAAGTAGGATGTACAGTGTTCTCAACATTGGCAACGTGAGGGGGTGGTCAACTCCTactggtgtaaaaaaaaatgctttgCTGTATACATTTTAGGTTGGTGAACATTTTGAGATGGGGATTCTAGTATCCTGCGAGTTTTTTCTGACATGCTTTTTAATGAGGTCACAAAAAGGAGATTTAATGACAGTGTATAATTGATTGTAATGCTTTGATGTCAGAATCAGAACCATAGAAACTATGATCAGAACTAAGCCTGGAGCTTCAGGTGGCAACAGGGTTGCTAACCTGATTTCTCCAATGTATTATGACAACAAGAAATCCAAGAAATCTTTCCTCTTTCATTTCtgacaaacacacaaaaaataaaaacatcaacCAAACCGCTGGAGCCCTACTGTCACAGCCCttaacctcccctccctccctatctctcctcaACCTCCCCCTACCTCAtcggtctccctctccctcactgcaGGAGGGCACTGAGACTGGCATTTCTGTTCCAGCAGGGTGTAATCTGCGCCCAGCATCATCCCATGCTGGGCAGGATGGTATGATAGACAGGGGGGTGAGAATGACTGGCGCTAACGAACATGTGACCTGGGCCCCATGCCAGCCGTGTCAACACTCTCCAGGGCCACATGTTCAGTTGCCAAACATTTCAGATAGAAATGCCTTGAATAGAGCCAACATGATTGCTTGTTTTACATGTCGGAAAGGCATGCTTGTTCTACATAACATATTTCTATCCGAACGTTCCAAAACACTGTGTCCTGCTGAACCGACCCCTAGTTCATGACACAAGACAAGCTTCAGATAAatcatcaacaaaacaaacacataatAAAGTTTGCCCAGGATAACCACTTCATTCACCTCCCCAAAGACAGTCAACTGCACTCATGTGTTTTGGTGCTTGGTTTTTATAAATCACTCTGAGTCATTTAGTTTCAGAAAATCAAATGAAAGGCAACAGAAAACACCCATTGTGCATTATAACATGACactcagagagagggagtggatacAGTAATTGAAGAAGATTTTGTGTGGAGGTATGGGCTGAAAGCAATATGTCAAGTTTGTTTAGCAAATCAATAAATCAGCAATGATCATTGATTGAAGTTTTTTTACCTGTTCTCTCCAGTTGATGGCTAAGCTGCTTTGCATATACAGTGCCCtcagaaattatttttccacattttgttgtgttacaaagtggggttaaaatggatttaattgtcattttttatttatttatttatttaaattgactgatttccttatttgaactgtaactcagtaaaatctttgaaattgttgcatgttgcgtttatatttttgttcagtatattttctaCATCAATAACTTTCACAGACTGTAAACTCCTCCCTCTGCATATGCTTGTGAACGTTATAAGTGTACAGCATGGCATCACGGCATAGTCAGTTATATTTCTCCCTTCTCTTCAGAAGTGACGGTGCTTGTGGCTATTGCATTGGGTGCTCAATCTACCCGCTCCTACGTGTTCAATggcacaatgtatgaatacaTTCATTCTATGTGTAGATATAAACTGTGTTAAGCATGCGCAGTTGTAGGGGGAGGCGACATCGGCTTGCAATGAAATGGCAATGGCATAGGGTtaaaagagatgagagagatgtcaagtgtgtgtgtgtgtgtgagcatcaAATATGTGTAGACccaagggggggtgggggggggggggttgaaaggTGCTGTCCCACTACAGTGGGGGTGTCAGATGTGCCTGTGGAGGTCGGGCAGGTCTGAGGTGGTGAGGGCGGGCCGGGGCTCGATGCCTCTGGTCTTCATGAACCCCAGCAGCTGCTCAGGGATCTCAGCCAGCACGTCCTTAGCCAGCCGGGCCATGCTCAGGACCTGGTTCCCCGACCGGTCCATGTAGTC

Function

NR:

description
copine-9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986967.1 False 2112 mRNA 0.52 15 68451084 68466608
TU949373 False 3783 TUCP 0.42 2 68466559 68470509
TU949377 True 3895 TUCP 0.42 2 68466559 68470509

Neighbor

gene id symbol gene type direction distance location
LOC110532746 LOC106572736 coding upstream 103896 68327935 ~ 68347188 (+)
LOC110532744 p38b coding upstream 143417 68273401 ~ 68307667 (+)
LOC118966196 NA coding upstream 191776 68258913 ~ 68259946 (+)
LOC110531252 NA coding upstream 192342 68257720 ~ 68258742 (+)
fance fance coding upstream 232124 68213202 ~ 68218960 (+)
LOC110532749 LOC106572763 coding downstream 97528 68564136 ~ 68582410 (+)
LOC118965941 cyp2k5 coding downstream 153003 68619611 ~ 68625512 (+)
LOC110532752 NA coding downstream 241102 68707710 ~ 68710615 (+)
LOC110532753 LOC106572761 coding downstream 274124 68740732 ~ 68765014 (+)
LOC100136778 LOC100136778 coding downstream 387956 68854564 ~ 68861086 (+)
G834695 NA non-coding upstream 24876 68421719 ~ 68426208 (+)
G834694 NA non-coding upstream 30338 68417383 ~ 68420746 (+)
G834261 NA non-coding upstream 96659 68354097 ~ 68354425 (+)
G834259 NA non-coding upstream 98843 68351740 ~ 68352241 (+)
G834258 NA non-coding upstream 99551 68351301 ~ 68351533 (+)
G834790 NA non-coding downstream 99596 68566204 ~ 68566414 (+)
G834791 NA non-coding downstream 101511 68568119 ~ 68568321 (+)
G834819 NA non-coding downstream 182192 68648800 ~ 68649134 (+)
G834823 NA non-coding downstream 188569 68655177 ~ 68656837 (+)
G834235 NA other upstream 162559 68287215 ~ 68288525 (+)
G834228 NA other upstream 182676 68268037 ~ 68268408 (+)
G834099 NA other upstream 401862 68048913 ~ 68049222 (+)
G833906 LOC100194703 other upstream 829718 67620878 ~ 67621366 (+)
G835266 NA other downstream 772988 69239596 ~ 69244478 (+)
LOC110532770 LOC106572808 other downstream 794563 69261156 ~ 69267394 (+)
G835268 LOC106572807 other downstream 820668 69287276 ~ 69367788 (+)

Expression


Co-expression Network