XLOC_026772 (rcvrna)


Basic Information

Item Value
gene id XLOC_026772
gene name rcvrna
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50441444 ~ 50443607 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052099
GGAGTCAAACCCAAAGAGGGGCCAACACTAGCACTCAGCACAGCACCATTCTGTTGTTCAGGTTGGAGACAGACACATTGAGAGAAGAAAAAGTGTGTGACAAGAAGTCAAGTGCGGAGGGTGGAAGAAACTCAGCAAATCCATCCCGTGGACCAGAGTACAATTTAAGGAATATGGGGAATACTAAGAGTGGGGCTTTGTCCAAAGAGCTTCTGGAGGACCTTAAGCTAAACACCAAATACACAGAAGAAGAGCTCTGCGCATGGTACACCAGCTTTCTCAAAGAGTGTCCCTCTGGACGTATTACCAAAGAACAGTTTGAGGGCATCTATGCAAGTTTCTTCCCAGATGCTGACCCTACAGCATATGCTAGGCACGTCTTCCGCAGCTTTGACACCAACGCTGATGGCACTTTGGACTTTAAGGAGTACATTGTGGCACTGCACCTCACCTCTTCAGGCAAGACCCTGCGCAAACTTGAATGGGCCTTTGCTTTGTACGATGTTGATGGAAATGGGACCATCAGTAAAAATGAGGTGCAGGAGATTGTACGGTCGATATTCAACATGGTTCCTGTTGAAGACCAGAAAAACCTTCCAGATGATGAGAACACGCCAGAAAAGCGAGCAGACAAAATCTGGGCTTTTTTCGGAAAGCAAGATAATGATAAGATTGGAGAGGGGGAATTCATTCAGGGTGTCATGGAGAACAAAGACATATTGAGGTTGATACAATATGATGAGCCAAAGAAGATTCAAGAAAAACTCAAAGAaaagaagcattaatagacacaTTAACTATGACTGATTAGAGCttcatttctattttacacaaaaaaacaaa
>TCONS_00052100
CAAAGAACAGTTTGAGGGCATCTATGCAAGTTTCTTCCCAGATGCTGACCCTACAGCATATGCTAGGCACGTCTTCCGCAGCTTTGACACCAACGCTGATGGCACTTTGGACTTTAAGGAGTACATTGTGGCACTGCACCTCACCTCTTCAGGCAAGACCCTGCGCAAACTTGAATGGGCCTTTGCTTTGTACGATGTTGATGGAAATGGGACCATCAGTAAAAATGAGGTGCAGGAGATTGTACGGTCGATATTCAACATGGTTCCTGTTGAAGACCAGAAAAACCTTCCAGATGATGAGAACACGCCAGAAAAGCGAGCAGACAAAATCTGGGCTTTTTTCGGAAAGCAAGATAATGGTAATAATGTGCTAAACAtaaatcacactgcaaaaaaacatgtttcttgaattgttttgtcttgtttaaacttcaaatataaaaagaaaaattctTCAATCACGACAAGCAAAaagtattgtcttgttttaagtaataattagctaatattaagtgagtttttctttaaaaaagcaaaataatctgctaataggGGAAGCAAAActatcttgtttttcctttttgacATGAGATTATTTTGTTAACCCCACtgacatattatttacattttttttagagaAAAACTCT

Function

symbol description
rcvrna Predicted to enable calcium ion binding activity. Acts upstream of or within cone photoresponse recovery. Is expressed in epiphysis and retinal photoreceptor layer. Orthologous to human RCVRN (recoverin).

GO:

id name namespace
GO:0036368 cone photoresponse recovery biological_process
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-106 Predicted to enable calcium ion binding activity. Acts upstream of or within cone photoresponse recovery. Is expressed in epiphysis and retinal photoreceptor layer. Orthologous to human RCVRN (recoverin).

Ensembl:

ensembl_id ENSDARG00000052223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052099 False 843 mRNA 0.44 3 50441444 50443607
TCONS_00052100 True 647 lncRNA 0.37 2 50442152 50443300

Neighbor

gene id symbol gene type direction distance location
XLOC_026770 NA coding downstream 3166 50433551 ~ 50438278 (-)
XLOC_026771 NA coding downstream 7021 50433793 ~ 50434423 (-)
XLOC_026769 NA coding downstream 100398 50338780 ~ 50341046 (-)
XLOC_026768 arl16 coding downstream 163485 50271962 ~ 50277959 (-)
XLOC_026767 rasd2 coding downstream 263786 50175166 ~ 50177658 (-)
XLOC_026773 CR812464.1 coding upstream 285252 50728859 ~ 50749116 (-)
XLOC_026774 pmp22a coding upstream 417569 50861176 ~ 50865079 (-)
XLOC_026775 cdc42ep4a coding upstream 507596 50951203 ~ 50998577 (-)
XLOC_026776 sdk2a coding upstream 587060 51030667 ~ 51142942 (-)
XLOC_026777 NA coding upstream 816224 51259831 ~ 51273723 (-)
XLOC_026761 NA non-coding downstream 503709 49934636 ~ 49937735 (-)
XLOC_026754 NA non-coding downstream 1023099 49406158 ~ 49418345 (-)
XLOC_026778 NA non-coding upstream 1001883 51445490 ~ 51448961 (-)
XLOC_026779 BX005299.1 non-coding upstream 1104526 51548133 ~ 51548250 (-)
XLOC_026780 NA non-coding upstream 1181996 51625603 ~ 51660056 (-)

Expression


Co-expression Network