LOC118966107


Basic Information

Item Value
gene id LOC118966107
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69106198 ~ 69107392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053343.1
TACTGGTCAGCCAAGTGCTCAATATAGATTATTTTGACAACAGAGATATTGTACAAAAGTAATCGAAAACAGGCCCATGACCCACCGGCCATGTTttttgtagaaataaaacatgatttaatgtatttttattttttaacaaccCACCCCAATAAAAAATGATTTGGTCTTTCTGCCGTTTGCCAGATGTCCAATTTGCCCATGCATGGAGCAATGTCATACACCTGGCAGCAGGCCAAAATAACGATGAATGCCTACACTCTAAAATGTTGCATTCCAACAAGCGTTCTTCTAAGATCCTAAAAGTTCCTCAGGGTTCTTGGCTCTGAAAAGTGCCTCAAATGTTCTTCCAAGAACCCCAAAGGAGGTGGGACCTCCTTAGAAACCTTAGTTTgtgggggttcttgcaggaactgcccaactgaaacatttggatttaAATTTGAGATgacagcaggtgcaggcacttaACTGAAACATAAGaaaatggacagTTGAACAGATATCaaatcaacaaagaggtaagaatatgttgaaggctatagcTGCATTGGGTGCAGATGACTATACCtctcacttgtgtgtgtgtgtgagtctgcagGTATACTGAGCAGGAGGTACACAAAGGTATGTACAATTggtatgttatgcagatcacatgTATCATCTACAGTTAATTTTGGATTCTCTAAAACCTTATAGGACTCAATCACAGCAGCCTCCCTGACCTCTTCAATGAAAATCCCAGAagcctctacattatggacaaggaaacctgttccATCACCACCATTCTGGTTATGGATACGGAGAACATCATCATGACAGAGGATAAATCCATTGGACTTGGGGCTCGGCTGGGAATTTTCCTTATTTTGGGATTTTTTAAattctgctttgccactaaaatcataataaacactgacaacTGAA
>XR_005053344.1
TACTGGTCAGCCAAGTGCTCAATATAGATTATTTTGACAACAGAGATATTGTACAAAAGTAATCGAAAACAGGCCCATGACCCACCGGCCATGTTttttgtagaaataaaacatgatttaatgtatttttattttttaacaaccCACCCCAATAAAAAATGATTTGGTCTTTCTGCCGTTTGCCAGATGTCCAATTTGCCCATGCATGGAGCAATGTCATACACCTGGCAGCAGGCCAAAATAACGATGAATGCCTACACTCTAAAATGTTGCATTCCAACAAGCGTTCTTCTAAGATCCTAAAAGTTCCTCAGGGTTCTTGGCTCTGAAAAGTGCCTCAAATGTTCTTCCAAGAACCCCAAAGGAGGTGGGACCTCCTTAGAAACCTTAGTTTgtgggggttcttgcaggaactgcccaactgaaacatttggatttaAATTTGAGATgacagcaggtgcaggcacttaACTGAAACATAAGaaaatggacagTTGAACAGATATCaaatcaacaaagaggtaagaatatgttgaaggctatagcTGCATTGGGTGCAGATGACTATACCtctcacttgtgtgtgtgtgtgagtctgcagGTATACTGAGCAGGAGGTACACAAAGGACTCAATCACAGCAGCCTCCCTGACCTCTTCAATGAAAATCCCAGAagcctctacattatggacaaggaaacctgttccATCACCACCATTCTGGTTATGGATACGGAGAACATCATCATGACAGAGGATAAATCCATTGGACTTGGGGCTCGGCTGGGAATTTTCCTTATTTTGGGATTTTTTAAattctgctttgccactaaaatcataataaacactgacaacTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053343.1 False 933 mRNA 0.40 3 69106198 69107392
XR_005053344.1 True 858 mRNA 0.41 4 69106198 69107392

Neighbor

gene id symbol gene type direction distance location
LOC118966106 NA coding downstream 50033 69054523 ~ 69056165 (-)
LOC110532760 LOC106572768 coding downstream 56367 69024339 ~ 69049831 (-)
LOC110532759 NA coding downstream 62664 69038907 ~ 69043534 (-)
LOC110532757 LOC106572754 coding downstream 93990 69005427 ~ 69012208 (-)
tmem106c tmem106c coding downstream 106257 68993206 ~ 68999941 (-)
LOC110532775 LOC106572811 coding upstream 246603 69353995 ~ 69356367 (-)
LOC110532794 LOC106572833 coding upstream 966152 70073544 ~ 70093532 (-)
LOC118966109 NA coding upstream 975289 70082681 ~ 70084697 (-)
LOC118965942 LOC106572832 coding upstream 990311 70097703 ~ 70101827 (-)
LOC110531267 LOC106572832 coding upstream 994243 70101635 ~ 70186834 (-)
G835654 NA non-coding downstream 17196 69085949 ~ 69089002 (-)
G835652 NA non-coding downstream 23449 69082431 ~ 69082749 (-)
G835608 LOC106572767 non-coding downstream 51208 68979883 ~ 69058294 (-)
G835626 NA non-coding downstream 98205 69007465 ~ 69007993 (-)
G835603 NA non-coding downstream 156210 68946838 ~ 68949988 (-)
G835609 NA non-coding upstream 90385 69197777 ~ 69268302 (-)
G835610 NA non-coding upstream 91685 69199077 ~ 69269438 (-)
G835659 NA non-coding upstream 102696 69210088 ~ 69214222 (-)
G835739 NA non-coding upstream 171296 69278688 ~ 69278925 (-)
G835740 NA non-coding upstream 172073 69279465 ~ 69279755 (-)
G834676 NA other downstream 730041 68375658 ~ 68376157 (-)
LOC110531249 LOC106572727 other downstream 1067237 68028408 ~ 68079899 (-)
LOC110532727 LOC106572699 other downstream 1545621 67543067 ~ 67560577 (-)
LOC110531246 LOC106572701 other downstream 1650798 67327762 ~ 67455661 (-)
G835808 NA other upstream 324175 69431567 ~ 69431900 (-)
G836619 NA other upstream 1101286 70208678 ~ 70209625 (-)
LOC110531265 plagl2 other upstream 1321074 70427951 ~ 70479312 (-)
G837952 NA other upstream 2714205 71821597 ~ 71822337 (-)

Expression


Co-expression Network