XLOC_026774 (pmp22a)


Basic Information

Item Value
gene id XLOC_026774
gene name pmp22a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50861176 ~ 50865079 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052102
ACTGCTGTGGTACTACATCTGGAATACGGAGACGCGTGCTTTGAGAATCTATAGTGGGATACCATAGAAAAGGCGACTTGTGTTTTCTTCCTGCTCTCTTGCATTTCAAGgatttttcttctctttctctctctcttacctAAGAAACCCAAAATGCTGGTCATTCTGTTTGCAACGATAGTCTTGCATTTGACAAGCCTTATCATTCTCTTCATTGCCACTTGTGCCAGCGCTTGGAGAACACATGGAGATACGAGTTATGACCTCTGGTACGACTGCACACAAATTAACGGAGGATATAAATGCAGTGGAAATGGTGATGCAGATTGGCTTCAAGCGGTGCAGGCCCTGATGGTCCTCGCCACCATTTTCTGCCTGATTTCCTTCATCATCTTCCTCTGCCAGCTCTTCACTCTCGTAAAGGGAGGTCGCTTCTTCTTCACTGCCGTTTTCCAGATCCTTGCAAGTCTGTTTGTGATGAGCGGTGCCATCATCTACACGGTGATGAGTCCACAGTGGAAAAATGATAGTGATACTTACGGATATGCTTTCGTCTTGGCCTGGCTGGCCTTCCCTCTTACGCTCATCAGTGGCTTAATTTACATCATCCTGAGGAAGAAAGAATGAGAGTTCAGCCCTCTGGAATTTTATTAGAACTGAAAAACTGACTCTTAAATGGCCGTCTCCTCCAGGCCTAAATATTTAGACCTAATGTGATTAAAGAAGTTGACCATTCATGAAGGTTCGATACAGCAACGACACAGTGAGCATGATGAAAATTAGTGTCTTTGGCTGGTGAGCCTATTTTTATCACATCTAcatggcttttttatttttgtttttgtaaatatgaaGTGTCAATGAAggcccagattaaaaaaaaaatactcatgtAGGAGAGATACAGTATAGGAAAAGtataaattgtttttgtttgttttgtattgtgtGTTATAATCATTTTCAAtatcttgtttttaataaagtgtATTCTCAAAGGGAA
>TCONS_00052103
GGGAAAAGAGAAAAGTTTGACGTAGTGACGCTTCAGGGCGGTGTTCTCACgtttctgaaaaaaagaaaggaagaaaaaaagcaaATACTGCTGTGGTACTACATCTGGAATACGGAGACGCGTGCTTTGAGAATCTATAGTGGGATACCATAGAAAAGGCGACTTGTGTTTTCTTCCTGCTCTCTTGCATTTCAAGgatttttcttctctttctctctctcttacctGCACGGTTGGCGTGCGGAGTTTTGCAATAACTGGTTTGGATGAAAATAAACGCTGCTCGGGAGTGTTTTCTTTTTGACTACTTCAGAAAAATGGAAGAAACCCAAAATGCTGGTCATTCTGTTTGCAACGATAGTCTTGCATTTGACAAGCCTTATCATTCTCTTCATTGCCACTTGTGCCAGCGCTTGGAGAACACATGGAGATACGAGTTATGACCTCTGGTACGACTGCACACAAATTAACGGAGGATATAAATGCAGTGGAAATGGTGATGCAGATTGGCTTCAAGCGGTGCAGGCCCTGATGGTCCTCGCCACCATTTTCTGCCTGATTTCCTTCATCATCTTCCTCTGCCAGCTCTTCACTCTCGTAAAGGGAGGTCGCTTCTTCTTCACTGCCGTTTTCCAGATCCTTGCAAGTCTGTTTGTGATGAGCGGTGCCATCATCTACACGGTGATGAGTCCACAGTGGAAAAATGATAGTGATACTTACGGATATGCTTTCGTCTTGGCCTGGCTGGCCTTCCCTCTTACGCTCATCAGTGGCTTAATTTACATCATCCTGAGGAAGAAAGAATGAGAGTTCAGCCCTCTGGAATTTTATTAGAACTGAAAAACTGACTCTTAAATGGCCGTCTCCTCCAGGCCTAAATATTTAGACCTAATGTGATTAAAGAAGTTGACCATTCATGAAGGTTCGATACAGCAACGACACAGTGAGCATGATGAAAATTAGTGTCTTTGGCTGGTGAGCCTATTTTTATCACATCTAcatggcttttttatttttgtttttgtaaatatgaaGTGTCAATGAAggcccagattaaaaaaaaaatactcatgtAGGAGAGATACAGTATAGGAAAAGtataaattgtttttgtttgttttgtattgtgtGTTATAATCATTTTCAAtatcttgtttttaataaagtgtATTCTCAAAGGGAA
>TCONS_00052104
ACTGAAGGGGAGCATTCAAAATGGCGGATGAAGCTGGCCTTGCTAAACCCAAAATGCTGGTCATTCTGTTTGCAACGATAGTCTTGCATTTGACAAGCCTTATCATTCTCTTCATTGCCACTTGTGCCAGCGCTTGGAGAACACATGGAGATACGAGTTATGACCTCTGGTACGACTGCACACAAATTAACGGAGGATATAAATGCAGTGGAAATGGTGATGCAGATTGGCTTCAAGCGGTGCAGGCCCTGATGGTCCTCGCCACCATTTTCTGCCTGATTTCCTTCATCATCTTCCTCTGCCAGCTCTTCACTCTCGTAAAGGGAGGTCGCTTCTTCTTCACTGCCGTTTTCCAGATCCTTGCAAGTCTGTTTGTGATGAGCGGTGCCATCATCTACACGGTGATGAGTCCACAGTGGAAAAATGATAGTGATACTTACGGATATGCTTTCGTCTTGGCCTGGCTGGCCTTCCCTCTTACGCTCATCAGTGGCTTAATTTACATCATCCTGAGGAAGAAAGAATGAGAGTTCAGCCCTCTGGAATTTTATTAGAACTGAAAAACT

Function

symbol description
pmp22a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in head mesenchyme; myotome; pectoral fin; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies. Orthologous to human PMP22 (peripheral myelin protein 22).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6757 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in head mesenchyme; myotome; pectoral fin; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies. Orthologous to human PMP22 (peripheral myelin protein 22).

Ensembl:

ensembl_id ENSDARG00000105223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052102 False 1003 mRNA 0.41 5 50861176 50863370
TCONS_00052103 False 1183 mRNA 0.41 6 50861176 50863456
TCONS_00052104 True 566 mRNA 0.46 5 50861513 50865079

Neighbor

gene id symbol gene type direction distance location
XLOC_026773 CR812464.1 coding downstream 112060 50728859 ~ 50749116 (-)
XLOC_026772 rcvrna coding downstream 417569 50441444 ~ 50443607 (-)
XLOC_026770 NA coding downstream 422898 50433551 ~ 50438278 (-)
XLOC_026771 NA coding downstream 426753 50433793 ~ 50434423 (-)
XLOC_026769 NA coding downstream 520130 50338780 ~ 50341046 (-)
XLOC_026775 cdc42ep4a coding upstream 86124 50951203 ~ 50998577 (-)
XLOC_026776 sdk2a coding upstream 165588 51030667 ~ 51142942 (-)
XLOC_026777 NA coding upstream 394752 51259831 ~ 51273723 (-)
XLOC_026778 NA coding upstream 580411 51445490 ~ 51448961 (-)
XLOC_026779 BX005299.1 coding upstream 683054 51548133 ~ 51548250 (-)
XLOC_026761 NA non-coding downstream 923441 49934636 ~ 49937735 (-)
XLOC_026780 NA non-coding upstream 760524 51625603 ~ 51660056 (-)
XLOC_026781 NA non-coding upstream 1027640 51892719 ~ 51897783 (-)

Expression


Co-expression Network