LOC110531265 (plagl2)


Basic Information

Item Value
gene id LOC110531265
gene name plagl2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70427951 ~ 70479312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988888.1
ATTCCCACAATGCTCGCGCCCCATAACTCGCTGCAGcctgagagcgagacagagacacagtcaggCCCCGAATATAGACACATTATAGAACAttttagattattatttttttaaatcaaacaaCAGATCGAGGGAAGAAAGACCGTGAAAGGTGGCGTGGAGTCTCTCCCACCGTATGTTTGCGAATAGTCGGTGATGGAATGTTACCGGGGTTCCGTGAGACATCGACTAATGCGGCGCTGGAAACTTTTTGACATTGACAACAGCAGCACTATCTGAGGCCCAGACCGTAGCCCTCCTAAGCACTACCCGGTCCTGCCTGGAGCCACACCTACACTGTACTCCACCACTCCCCACGTAGAGCCTGGAAGGCAGGGAAGCCACGGCCGGGATTTCATGGCAACAGCACCCTAGGGCTGCCATGGCAGCTGGTGCCGCCGAGGCTCCACGCCATGTTACAGCACTGACGCCGGAGGACGAGGAACGACTAGCCGCTGCCGAGCTGTACAGCGACTCTACCCTgccacggacagagagagagagagagagggaagagcgaGCCAGCGGCAACGAGTGTTTGGTGTGTGGGACTTGGTTTGGTTCGCAGGATAAGCTTCGGCTTCACTCTTTCTGTCACACGGGAGAGAAACCCTTCCACTGCTCCCTGCCACACTGCCCTAAGGCCTTCAGCTCCAAATATAAACTGTTCAGGCATATGGCCACACACTCTCCGCAGAAAACTCACCAGTGCTCGTTCTGCGAGAAAATGTTTCACCGCAAAGATCACCTGAAGAACCACCTGCAGACCCATGACCCCAACAAAGAGGCCTTCAAGTGTGAGGAATGTGGCAAGCACTACAACACCAAGCTGGGCTACAAGCGTCATGTGGCCATGCATTCAGCCACGGCTGGGGACCTCACCTGTAAGGTGTGCCTGCAGAGCTACGAGAGTACCCCTGCCCTGATGGAGCATCTCAAGAGCCACTCGGGCAAGTCCTCCGGAGGTGCCAAGGAGAAGAAGCATCCGTGTGACCACTGTGACCGCCGCTTCTACACACGGAAGGACGTGCGTCGCCACATGGTGGTCCACACCGGCAGAAAGGACTTCCTGTGTCAGTACTGCGCCCAGCGCTTCGGCAGGAAGGACCACCTGACACGGCATGTGAAGAAGAGCCACTCTCAGGAGCTGCTGAAGATAAAGACTGAGCCTCCGGACATGCAAGGCATGCTGGGCTCTGGCTCCTCCCCCTGCACTGTCAAAGAGGAGCTCAGCCCCATGATGTGCAGTATGAGTTCCAACAAAGACCACATGCTGGCCAAGACGTTCCCCAGCGGCACCCCCTTCCCCATGGGCATGTACAACCCCCACCACCTCCAGGCCATGTCCAACCCTGAGGTGGGCCACCACCACTCTCTGATGCCCGGCTCCCTGTCCGCTGCCATGGGGATGGGCTGCCACATGGAGCCCCCCCTCCATCCcccgcaccaccaccaccaccaccatcaccaccacatcCAAAACTCCCCCCCGCTGCCCCACCTGCAGCAGCCCCAACAGCACCAGCAGCAACAGCACGCCCAGCCGCCGCCCAAATACCAGCTGGGATCTACCTCATACCTGCTGGACAAGCCCCTCAAAGTGGAGATGGAGAGCTTTCTCATGGATCTGCAGAGTGGGCTGCCGGGCCACCACTCAGGCGATCATCATCATGCTGCTGCCTCGCCCCCCAAGGAGGGACTAGAGCTCCCCTCAGGCCTGACAGACGAGCTGTGTGGTGACCCCCTCCTGTCTAAGAGCCCTGCTGTCATCGCTGAGTCTCTGTGCACTGCTAACATGGACTTCTCTCACCTGCTGGGCTTCCTGCCCCTCAACCTGCCCCCCTACAATGCCCCCATCAGCACAGCAGGACTAGTCATGGGGTACACCTCATCTgctgcctcctcctcttcctcctcttcgtcaTCCTTGCGTGGCTCTGAGCCCCACGCCGCTGCCACAGCCGCACCCCTTACCTCTTTGCAACCTCAACCTCAGGAGCAGCATGGCTCCAGCAGGGGCCTGGGTCTAGGGCCCCTGCACCCTCTCCCGCCAGTGTTTAGCTCCAGCCTCAGCACGACCACCCTGCCTCGCTTTCACCAGGCCTTCCAATGAGGGGCCCCCACGCCATCATCCTCAGCTCACTGCCTCACACCCAGGGGGCCAGGGGCCTCCTGGGCTGCAAGGGTGGACATAAAAACACTTGAACACTTAGAAGCCTTAATTGAAGTGCACTAAAGCTTTTGATTGAGCTCCAGAGGAAACTAAACCCCTTTGTTGAAACAAAAAGGAAAAGACGAGAAACTTTCAAACTAAGGAGCTTTTGTTTGGCCTTTCTTTAGCTGTGATGATTGAATCCCTcttgctttgttgttgtttgtttagttggATCCCCATTTAGCtttcagcagctactcttcctggggtccacaaaaacacgacaagtaacaaaacactgatacacaaGGACAGTCACACGAGTTAAAATACAGGGATGTACAAACAATACATctaaaagatgtgtgtgtgtgttagagtgtgtgtctcttagtgtgtctgtgttagtctgtgtgtctgtgtgtctgtgtgctagtgtgtctgtgtgtcagtgtgtctgtgtgctagtgtgtctgtgtgtc
>XM_036988889.1
ATTCCCACAATGCTCGCGCCCCATAACTCGCTGCAGcctgagagcgagacagagacacagtcaggCCCCGAATATAGACACATTATAGAACAttttagattattatttttttaaatcaaacaaCAGATCGAGGGAAGAAAGACCGTGAAAGGTGGCGTGGAGTCTCTCCCACCGTATGTTTGCGAATAGTCGGTGATGGAATGTTACCGGGGTTCCGTGAGACATCGACTAATGCGGCGCTGGAAACTTTTTGCAGACATTGACAACAGCAGCACTATCTGAGGCCCAGACCGTAGCCCTCCTAAGCACTACCCGGTCCTGCCTGGAGCCACACCTACACTGTACTCCACCACTCCCCACGTAGAGCCTGGAAGGCAGGGAAGCCACGGCCGGGATTTCATGGCAACAGCACCCTAGGGCTGCCATGGCAGCTGGTGCCGCCGAGGCTCCACGCCATGTTACAGCACTGACGCCGGAGGACGAGGAACGACTAGCCGCTGCCGAGCTGTACAGCGACTCTACCCTgccacggacagagagagagagagagagggaagagcgaGCCAGCGGCAACGAGTGTTTGGTGTGTGGGACTTGGTTTGGTTCGCAGGATAAGCTTCGGCTTCACTCTTTCTGTCACACGGGAGAGAAACCCTTCCACTGCTCCCTGCCACACTGCCCTAAGGCCTTCAGCTCCAAATATAAACTGTTCAGGCATATGGCCACACACTCTCCGCAGAAAACTCACCAGTGCTCGTTCTGCGAGAAAATGTTTCACCGCAAAGATCACCTGAAGAACCACCTGCAGACCCATGACCCCAACAAAGAGGCCTTCAAGTGTGAGGAATGTGGCAAGCACTACAACACCAAGCTGGGCTACAAGCGTCATGTGGCCATGCATTCAGCCACGGCTGGGGACCTCACCTGTAAGGTGTGCCTGCAGAGCTACGAGAGTACCCCTGCCCTGATGGAGCATCTCAAGAGCCACTCGGGCAAGTCCTCCGGAGGTGCCAAGGAGAAGAAGCATCCGTGTGACCACTGTGACCGCCGCTTCTACACACGGAAGGACGTGCGTCGCCACATGGTGGTCCACACCGGCAGAAAGGACTTCCTGTGTCAGTACTGCGCCCAGCGCTTCGGCAGGAAGGACCACCTGACACGGCATGTGAAGAAGAGCCACTCTCAGGAGCTGCTGAAGATAAAGACTGAGCCTCCGGACATGCAAGGCATGCTGGGCTCTGGCTCCTCCCCCTGCACTGTCAAAGAGGAGCTCAGCCCCATGATGTGCAGTATGAGTTCCAACAAAGACCACATGCTGGCCAAGACGTTCCCCAGCGGCACCCCCTTCCCCATGGGCATGTACAACCCCCACCACCTCCAGGCCATGTCCAACCCTGAGGTGGGCCACCACCACTCTCTGATGCCCGGCTCCCTGTCCGCTGCCATGGGGATGGGCTGCCACATGGAGCCCCCCCTCCATCCcccgcaccaccaccaccaccaccatcaccaccacatcCAAAACTCCCCCCCGCTGCCCCACCTGCAGCAGCCCCAACAGCACCAGCAGCAACAGCACGCCCAGCCGCCGCCCAAATACCAGCTGGGATCTACCTCATACCTGCTGGACAAGCCCCTCAAAGTGGAGATGGAGAGCTTTCTCATGGATCTGCAGAGTGGGCTGCCGGGCCACCACTCAGGCGATCATCATCATGCTGCTGCCTCGCCCCCCAAGGAGGGACTAGAGCTCCCCTCAGGCCTGACAGACGAGCTGTGTGGTGACCCCCTCCTGTCTAAGAGCCCTGCTGTCATCGCTGAGTCTCTGTGCACTGCTAACATGGACTTCTCTCACCTGCTGGGCTTCCTGCCCCTCAACCTGCCCCCCTACAATGCCCCCATCAGCACAGCAGGACTAGTCATGGGGTACACCTCATCTgctgcctcctcctcttcctcctcttcgtcaTCCTTGCGTGGCTCTGAGCCCCACGCCGCTGCCACAGCCGCACCCCTTACCTCTTTGCAACCTCAACCTCAGGAGCAGCATGGCTCCAGCAGGGGCCTGGGTCTAGGGCCCCTGCACCCTCTCCCGCCAGTGTTTAGCTCCAGCCTCAGCACGACCACCCTGCCTCGCTTTCACCAGGCCTTCCAATGAGGGGCCCCCACGCCATCATCCTCAGCTCACTGCCTCACACCCAGGGGGCCAGGGGCCTCCTGGGCTGCAAGGGTGGACATAAAAACACTTGAACACTTAGAAGCCTTAATTGAAGTGCACTAAAGCTTTTGATTGAGCTCCAGAGGAAACTAAACCCCTTTGTTGAAACAAAAAGGAAAAGACGAGAAACTTTCAAACTAAGGAGCTTTTGTTTGGCCTTTCTTTAGCTGTGATGATTGAATCCCTcttgctttgttgttgtttgtttagttggATCCCCATTTAGCtttcagcagctactcttcctggggtccacaaaaacacgacaagtaacaaaacactgatacacaaGGACAGTCACACGAGTTAAAATACAGGGATGTACAAACAATACATctaaaagatgtgtgtgtgtgttagagtgtgtgtctcttagtgtgtctgtgttagtctgtgtgtctgtgtgtctgtgtgctagtgtgtctgtgtgtcagtgtgtctgtgtgctagtgtgtctgtgtgtc
>TU951719
GCAGAGTGGGCTGCCGGGCCACCACTCAGGCGATCATCATCATGCTGCTGCCTCGCCCCCCAAGGAGGGACTAGAGCTCCCCTCAGGCCTGACAGACGAGCTGTGTGGTGACCCCCTCCTGTCTAAGAGCCCTGCTGTCATCGCTGAGTCTCTGTGCACTGCTAACATGGACTTCTCTCACCTGCTGGGCTTCCTGCCCCTCAACCTGCCCCCCTACAATGCCCCCATCAGCACAGCAGGACTAGTCATGGGGTACACCTCATCTgctgcctcctcctcttcctcctcttcgtcaTCCTTGCGTGGCTCTGAGCCCCACGCCGCTGCCACAGCCGCACCCCTTACCTCTTTGCAACCTCAACCTCAGGAGCAGCATGGCTCCAGCAGGGGCCTGGGTCTAGGGCCCCTGCACCCTCTCCCGCCAGTGTTTAGCTCCAGCCTCAGCACGACCACCCTGCCTCGCTTTCACCAGGCCTTCCAATGAGGGGCCCCC

Function

symbol description
plagl2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axial vasculature; immature eye; lateral plate mesoderm; nervous system; and otic vesicle. Orthologous to human PLAGL2 (PLAG1 like zinc finger 2).

NR:

description
zinc finger protein PLAGL2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988888.1 False 2676 mRNA 0.56 3 70427951 70479312
XM_036988889.1 False 2679 mRNA 0.56 3 70427951 70479312
TU951719 True 493 TUCP 0.63 1 70428466 70428958

Neighbor

gene id symbol gene type direction distance location
LOC110531267 LOC106572832 coding downstream 241117 70101635 ~ 70186834 (-)
LOC118965942 LOC106572832 coding downstream 326124 70097703 ~ 70101827 (-)
LOC110532794 LOC106572833 coding downstream 334419 70073544 ~ 70093532 (-)
LOC118966109 NA coding downstream 343436 70082681 ~ 70084697 (-)
LOC110532775 LOC106572811 coding downstream 1071584 69353995 ~ 69356367 (-)
LOC110532788 LOC106572823 coding upstream 41767 70521079 ~ 70532304 (-)
myt1b LOC106566409 coding upstream 75095 70554407 ~ 70613227 (-)
LOC110532784 LOC106572840 coding upstream 296514 70775826 ~ 70778305 (-)
LOC110533038 LOC106572843 coding upstream 351064 70830376 ~ 70838840 (-)
LOC110531262 LOC105023799 coding upstream 402356 70881668 ~ 71091917 (-)
G836703 NA non-coding downstream 1567 70426116 ~ 70426384 (-)
G836706 NA non-coding downstream 1991 70425383 ~ 70425960 (-)
G836705 NA non-coding downstream 3379 70424326 ~ 70424572 (-)
G836707 NA non-coding downstream 6391 70420888 ~ 70421560 (-)
G836738 NA non-coding downstream 7459 70419853 ~ 70420492 (-)
G836772 NA non-coding upstream 9894 70489206 ~ 70491536 (-)
G836776 NA non-coding upstream 22068 70501380 ~ 70501938 (-)
G836780 NA non-coding upstream 29557 70508869 ~ 70509185 (-)
G836756 NA non-coding upstream 39084 70518396 ~ 70520968 (-)
G836619 NA other downstream 218326 70208678 ~ 70209625 (-)
G835808 NA other downstream 996051 69431567 ~ 69431900 (-)
G835608 LOC106572767 other downstream 1369657 68979883 ~ 69058294 (-)
G834676 NA other downstream 2051794 68375658 ~ 68376157 (-)
G837952 NA other upstream 1342285 71821597 ~ 71822337 (-)
G838098 NA other upstream 1455566 71934878 ~ 71936573 (-)
G838204 NA other upstream 1639349 72118661 ~ 72119287 (-)
G839372 NA other upstream 2547663 73026975 ~ 73028966 (-)
G839553 NA other upstream 2982043 73461355 ~ 73463040 (-)

Expression


Co-expression Network