LOC100301637 (LOC100301637)


Basic Information

Item Value
gene id LOC100301637
gene name LOC100301637
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71423205 ~ 71426619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160475.1
ACTCCCTCTGTCCAAGAAGAACCAGAAGCAACCATGATGAACTGGGCTGTCCTCCTGTGTGCCTTAGTGGCCCTGTCCGAGTGTAATGTCAAGATCTCTCTGATCAAGGGGAAGACTGCCAGAGAGACCCTGATGGAGAAGGGTATATGGGAGGAGACCAGGCTGAAGTTCCCCTACAAACCTATGGCCAAGTTCTACCAGAATGGTGATGAGGCTATGACCAACGATGCTGATTTGTCCTACTACGGCGTGATTTCTATTGGAACACCTCCCCAGTCCTTCAACGTCATCTTTGACACTGGCTCCTCCAACCTGTGGGTTCCCTCGGTCTACTGCTCCAGCCAGGCCTGCCAAAATCATGCCAAATTCAATCCTGCACAGTCCAGCACCTTCACGTGGGCCAACAAGCCCGTTTCCATTCAGTACGGAACTGGCAGCATGACTGGGCGGCTGGCATACGACACTGTTTCGGTGGGCGGTATCTCTGTGACTCAGCAGATCTTTGGAGccagtcagaccgaggctccctTCATGGCCAACATGGTTGCCGACGGTATCCTGGGCCTGGCTTTCCCCAACCTGGCGGCCTCTGGGGCCACACCAGTCTTTGACAACATGATGAGTCAGGGCCTCGTTTCCCAGAACCTCTTCTCTGTCTACCTGAGCGGAAACTCAGCACAGGGTAGTGTGGTGTCTTTCGGAGACATTGAGTCTAACTACTACACCGGACAGATCACCTGGATCCCCCTGTCCTCCGAGACCTACTGGCAGATCAACATGGACAGCGTTACCATCAACGGCAACACAGTGGCTTGCAATGGTGGGTGTCAGGCTATCATAGATACTGGCACCTCCCAGATCGTTGGGCCAACCACTGACATCAACAACATGAACAGCTGGGTCGGAGCCACTACTGACCAGTATGGAGATGCCACCGTGAACTGCAACAACATCCCCAACATGCCTGAGGTGACCTTCACCCTCAACGGAAACGCCTTCACCATCCCTGCCTCCGCCTACACCTCCCAGaACTCCAACGGCTGCATGACTGGTTTTGGTAACGGTGGAACTCAGCAGCTCTGGATCCTTGGAGATGTCTTCATCAGGCAGTACTATGCCATCTTTGACAGACAGAACAACAATGTCGGTCTGGCCCAGATCGCGTAAGATATCTACTGTGAAATAAGTCTGGATTGAAACTAAGTCTTCCAGTTATGAATAGTAATATGTTATATATGTGATTGTAGCACTAGAATTGGCATAGTTGGAGAAATGTTGTAGATTGTGAAATGTGCACAGTTgccaaataataaaaaaaaacactatatTCCCAA

Function

NR:

description
pepsinogen precursor

GO: NA

KEGG:

id description
K06002 PGA; pepsin A

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160475.1 True 1334 mRNA 0.51 9 71423205 71426619

Neighbor

gene id symbol gene type direction distance location
dclre1b dclre1b coding downstream 247550 71158941 ~ 71175655 (-)
LOC110531262 LOC105023799 coding downstream 331288 70881668 ~ 71091917 (-)
LOC118966111 NA coding downstream 420544 71001152 ~ 71002661 (-)
LOC110533038 LOC106572843 coding downstream 584365 70830376 ~ 70838840 (-)
LOC110532784 LOC106572840 coding downstream 644900 70775826 ~ 70778305 (-)
prok1 prok1 coding upstream 5446 71432065 ~ 71440518 (-)
rbm15 rbm15 coding upstream 136657 71563276 ~ 71568790 (-)
LOC110517102 LOC106572846 coding upstream 156875 71583494 ~ 71593154 (-)
LOC110532802 kcnc4 coding upstream 407585 71834204 ~ 71899748 (-)
LOC110532805 LOC106566386 coding upstream 474962 71901581 ~ 71905774 (-)
G837688 NA non-coding downstream 157 71422399 ~ 71423048 (-)
G837687 NA non-coding downstream 894 71421266 ~ 71422311 (-)
G837682 LOC106572853 non-coding downstream 2676 71419926 ~ 71420529 (-)
G837683 NA non-coding downstream 7549 71414395 ~ 71415656 (-)
G837672 NA non-coding downstream 27627 71395215 ~ 71395578 (-)
G837699 NA non-coding upstream 18144 71444763 ~ 71444992 (-)
G837701 NA non-coding upstream 20096 71446715 ~ 71447339 (-)
G837706 NA non-coding upstream 28431 71455050 ~ 71455270 (-)
G837710 NA non-coding upstream 32658 71459277 ~ 71459477 (-)
LOC110531265 plagl2 other downstream 994247 70427951 ~ 70479312 (-)
G836619 NA other downstream 1213580 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1338508 70082681 ~ 70084697 (-)
G835808 NA other downstream 1991305 69431567 ~ 69431900 (-)
G835608 LOC106572767 other downstream 2364911 68979883 ~ 69058294 (-)
G837952 NA other upstream 394978 71821597 ~ 71822337 (-)
G838098 NA other upstream 508259 71934878 ~ 71936573 (-)
G838204 NA other upstream 692042 72118661 ~ 72119287 (-)
G839372 NA other upstream 1600356 73026975 ~ 73028966 (-)
G839553 NA other upstream 2034736 73461355 ~ 73463040 (-)

Expression


Co-expression Network