prok1 (prok1)


Basic Information

Item Value
gene id prok1
gene name prok1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71432065 ~ 71440518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988917.1
agagagagcttggacATGACACCAGGCACAGTGAGTCAGACGGACAGCACAAGAAGGAGAGAGTGACAACAGAAAGTAGCTACTGCGCTGAAGGGGGCTACAGTATTGCTGTGTTGAGTAGAGACTGACAACAGAAAGTAGCCACTGCGCTGAAGGGGGCTACAGTATTGCTGTGTTGAGTAGAGACTGACAACAGAAAGTAGCCACTGCGCTGAAGGGGGCTACAGTATTGCTGTGTTGAGTAGAGACTGACAACAGAAAGTAGCCACTGCGCTGAAGGGGGCTACAGTATTGCTGTGTTGAGTGGAGACTGACAACAGAAAGTAGCCACTGCGCTGAAGGGGGCTACAGTATTACTGTGTTGAGGAGAGAGTGGTACCCTACACTATCCTgtgctactgttgctgctacgGCCATGGGGACCAGGGTCCTGCTTCTCTCCATCTTAATGATTTCTTTCAACTGGTCCATGGGGGCTGTCATCACTGGGGCGTGTGATAGAGATGTTCAGTGTGGGTTTGGTCTATGCTGTGCTGTCAGCCTGTGGCTTAGGGGACTGCGGATGTGTATTCCACGAGGGGAAGAGGGGGACGAGTGCCACCCCTTCAGTCACAAGGTGCCCTATCCAGGAAAAAGACAGCATCACACCTGTCCATGTCTTCCTCATTTGGTCTGTACCAGCTACACAGGTAGCACATACAGGTGTACCAAAGACTTCAAAAACCTAGACTTTTGAtgacagaggaggaagaagaggagagagaagaagaggagaaagatggGAAACAATGACAGCAGCACATTCAATCACACACGACCTTCACTCTTTTCCCTTTTACTTAGTCCCTCAATCACACACAACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTGACTTAGTAACCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCGTTTCCCTCTACTTAGACCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGACCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTGACTTAGTAACCTCAATCACACACGACCTTCACTCTTTTCCCTTTGACTTAGTAACCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTTACTTAGTCCCTCAATCACACGTCATACCTTCACTCTTTTCCCTTTAACTTAGTAACCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACAACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTGACTTAGTAACCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACAACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACAACCTTCACTATTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTTTGACTTAGTAACATCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTTCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACAACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACAACCTTCACTCTTTTCCCTCTACTTAGTCCCTCAATCACACACAACCTTCACTCTTTTCCCTTTGACTTAGTAACCTCAATCACACACGACCTTCACTCTTTTCCCTCTACTTAGTCTTTGTTCTATATACTATAGGAACTGTTATATTTCATGAGAATATAACATCTGTAAATACACCTCACTGTGCCCCACTGGCCACCAAAGACATGCCAAGACAATATATACATGCTAAACTGTGCCAAGAAAGATACATAGCtaaatgttttctttttttatgTATGTACCAATTGCAGACTATAGTTTTAATACACAGGCCTGTCAAAAGCTTGATGTAAATCATAATAATATACGGTTTAATTCATATGCAAATGTGATGTTTTTATTTATGatcaacatttttgcaaattaaactcactgtatcataccactGTATCATACCACTGTGAAAAATATGTACTTACACTGTGTGttgtctgttgttgttatgtaaGTAATTATGTAagttatatatactgaacaaaaatataaactcaa
>TU952945
GTATTGCTGTGTTGAGTGGAGACTGACAACAGAAAGTAGCCACTGCGCTGAAGGGGGCTACAGTATTACTGTGTTGAGGAGAGAGTGGTACCCTACACTATCCTgtgctactgttgctgctacgGCCATGGGGACCAGGGTCCTGCTTCTCTCCATCTTAATGATTTCTTTCAACTGGTCCATGGGGGCTGTCATCACTG

Function

symbol description
prok1 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in circadian rhythm; positive regulation of cell population proliferation; and regulation of angiogenesis. Predicted to be active in extracellular region. Orthologous to human PROK1 (prokineticin 1).

NR:

description
PREDICTED: prokineticin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988917.1 False 2787 mRNA 0.44 3 71432065 71440518
TU952945 True 200 lncRNA 0.51 1 71440031 71440230

Neighbor

gene id symbol gene type direction distance location
LOC100301637 LOC100301637 coding downstream 5446 71423205 ~ 71426619 (-)
dclre1b dclre1b coding downstream 256410 71158941 ~ 71175655 (-)
LOC110531262 LOC105023799 coding downstream 340148 70881668 ~ 71091917 (-)
LOC118966111 NA coding downstream 429404 71001152 ~ 71002661 (-)
LOC110533038 LOC106572843 coding downstream 593225 70830376 ~ 70838840 (-)
rbm15 rbm15 coding upstream 122758 71563276 ~ 71568790 (-)
LOC110517102 LOC106572846 coding upstream 142976 71583494 ~ 71593154 (-)
LOC110532802 kcnc4 coding upstream 393686 71834204 ~ 71899748 (-)
LOC110532805 LOC106566386 coding upstream 461063 71901581 ~ 71905774 (-)
LOC110532803 LOC106572868 coding upstream 466473 71906991 ~ 71955546 (-)
G837688 NA non-coding downstream 9017 71422399 ~ 71423048 (-)
G837687 NA non-coding downstream 9754 71421266 ~ 71422311 (-)
G837682 LOC106572853 non-coding downstream 11536 71419926 ~ 71420529 (-)
G837683 NA non-coding downstream 16409 71414395 ~ 71415656 (-)
G837672 NA non-coding downstream 36487 71395215 ~ 71395578 (-)
G837699 NA non-coding upstream 4245 71444763 ~ 71444992 (-)
G837701 NA non-coding upstream 6197 71446715 ~ 71447339 (-)
G837706 NA non-coding upstream 14532 71455050 ~ 71455270 (-)
G837710 NA non-coding upstream 18759 71459277 ~ 71459477 (-)
G837645 NA non-coding upstream 24613 71465131 ~ 71466020 (-)
LOC110531265 plagl2 other downstream 1003107 70427951 ~ 70479312 (-)
G836619 NA other downstream 1222440 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1347368 70082681 ~ 70084697 (-)
G835808 NA other downstream 2000165 69431567 ~ 69431900 (-)
G835608 LOC106572767 other downstream 2373771 68979883 ~ 69058294 (-)
G837952 NA other upstream 381079 71821597 ~ 71822337 (-)
G838098 NA other upstream 494360 71934878 ~ 71936573 (-)
G838204 NA other upstream 678143 72118661 ~ 72119287 (-)
G839372 NA other upstream 1586457 73026975 ~ 73028966 (-)
G839553 NA other upstream 2020837 73461355 ~ 73463040 (-)

Expression


Co-expression Network