rbm15 (rbm15)


Basic Information

Item Value
gene id rbm15
gene name rbm15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71563276 ~ 71568790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988920.1
GGGCTCTGACAGTATTCTAGACAAAATGGCGGATGTTGTTGTTTTGCCGCAGGGTCAGTGCTAATCGGAGTTCGCCTTTTCACTGATTTACTGCAAGAAAATACATACATAATATCGTTGGTGACAACCTTCATCATTGTAAGAGTTTGCGAGGTGGACTGTAATGAAAGGCAAAGAAAGGTCGCCGATTAAAAAGCGCTCTCGGGCTTTGGATGATATCCGAGACAGGGGAGGAGGCCATCCGCCCAGCAAGAAAATGGGGGCTATCTCAGTTTCCAGTGGGAGCAATAATGGAAATAGCTCGACTAAAAGTGACGCAGGATCTACAAGAAGGAGTTTGTTGGGCGAAAAGAGAGACAGGGATTTTGACGGGCATGTTTCCAGTCGATCCGGCGTGAGTAACCATAGTTATCCCGGTGCTGTTGCTAGCGCTATCGGTAAGAACCACAACTTGGGCTTGACTCTCGATTTAGCCACTGCAAGGACTAGTAATTCTCGTGGCGAGCGTGCTCTGCCTCCCCCCAACAACAACGAAAGTGAGTACAAAACTCTTAAAATCAGTGAATTAGGAACTCAGTTGAGCGATGAAGACATCGAAGATGGACTTTTCCACGAATTCAAAAAATTTGGGGACGTGAGTGTCAAAATAAGCCGCAGCAACGACGAGAGAATCGCGTTTGTCAACTTCAGAAAGCCCGAGGATGCCAGAGCAGCTAAACACGCCCGGGGTAGGTTAGTACTTTACGACCGTCCTCTGAAAATCGACGCAGTGTACATAAACAGACGGAGAAGTCGCTCTCCAGTTGAGAGAGTTGACAGAGACCCTTATGTTGGAGCCCCAGGGCACAGACACCTTCACACCCAGAGACCCCTCTCCCCATCAGGGCTTGGATACAgagactacagactacagcagCTGGCACTTGGGcgcctccctcctcccccacttCCCCCTTTGCCCAGAGACCTAGAACGGGAGAGGGAGTTTGCCCTGTTTGAAGCCAGGTCACGCCCAGGTCCTGCTTTCATTGCAGAGAGAGTTGCTGCTTTCCGCGAGGAGGATTTTATCTCTCCCGAGGATGACCAAAGAGCTAACAGAACGCTGTTTCTTGGCAACTTGGACATTACAGTCACAGAGACGGACCTGAGGAGGGCGTTTGACAGGTTTGGGGTGATAACAGAGGTGGATATAAAGCCCACACGGGGACAGACCAGCACATACGGATTTCTGAAGTTTGAGAACCTAGACATGGCCCATCGCGCCAAACTCACCATGTCTGGGAAGATAGTGGGCCGTAACCCCATAAAGATTGGCTATGGTAAGGCCACCCCCACCACACGCCTATGGGTGGGTGGGCTCGGACCCTGGGTCCCCCTAGCAGCATTGGCCAGAGAGTTTGACCGCTTTGGTACAATAAGGACCATTGACTACAGAAAGGGGGACACCTGGGCTTATATACAGTACGAGAGCCTTGACGCTGCTCAGGCTGCGTGCACTCACATGCGTGGCTTCCCTCTTGGGGGGCCCGAGAGGAGACTCAGGGTGGACTTTGCAGACACAGAGCACCACTACCAGCAGCAGTTCCTTCAGCCTCTTCCTCTACCCCCCTTCGACATGGTGGCAGAGGCTTTCATCCACCGAGCCACAGCTGAGCCCCTGAGGGACAGAGAAAGGACTCCACCGCCGCTCCACTTCAGGGAGAGAGATCTGGGCTTCCCCGGGGCTGAGTGGCCCCCTAACCCGGCTATGCGTGAACGAGTACGTCCCGGGGTCTTTGAGCTGCCAGATCACCTGCAGCGGGACCGGCGGCCGGGGGGGAGGGAGCCCTGGTCTCTAGAGCGTGAGCTGGTGGGGCGCGGCGGCGACCCGGGACGGAAACGACGCCTCATGGACGACGGTCGCCATCTTGATATCTCTCCTGACAGCACTGACCGCACGGCACGCCGGCGCAGAGGTGGCCCATCCCCAGACGGTAGCCCCGACGGAGGCCGCTTCAGTGACTCAGAGCGCCCCCCTCGCGGCGACGACAGACCCTCCCCTGGACGAGACCGCCGCCCCAGTCTGGAGCGTCCTGGCGGAGGAGACAGGAGATTGAAGAACCAGGGGAATCTCGCTGAGAGAGGGGCCTCCAGCAGTGGCCTCACATCTTCAACAGGGGAACGGAAACGTAAAGCCggcgacagcagcagcagaggacCCGGAGCTAAGAGGGATCGCTCCTCAGACCAGGGCGGCTCTAAAGGCAGTCAGTCATCCAAGCTGAGCCTGGCCTGGCACGGCATGCTCCTCCTGAAGAACAGCAACTTCCCCGCCAACATGCACCTCCTGGAGGGTCACCAGGGCGTGGCCAAGGACCTCCTCGTCGACGGCCCCACGGGGAGACAGGTGGGCGAACTCAAGATCACCCAGCGCCTCCGCCTCGACCAGCCCAAGCTGGACGAGGTCTCCAGACGCATCAAAGCGGCCGGCCCCGGCGGCTACGCCGTCCTCCTGGCGGTTCCCGGTCCCGGCGGCGAGGAGGTGTCGTCGACGGACCCTGCAGCTTCTACCCAGCGTCCTCTCCGCAATCTGGTGTCCTACCTGAAACAGAAGCAGGCAGCCGGAGTCATCAGCCTGCCCGTTGGAGGCAGCCGGGATAAGGACCACCAGGGTGTTCTCCATGCGTTCCCTCCCTGTGAGTTCTCACAGCAGTTCATTGATGCCTCGGCTAAAGCTCTGGCCAAAACCGACGAGGACTAtctggtgatggtagtggtgcgAGGGCCATCATAACTACAATCAGAGAGGAAGCAGGACATCAGTGATATTGTACAAAAGAAAAAAAGATGTCAGTAACTACTATTGCATGCTGTGTGTTGAGTTCAGCTCCATGGGGTACTACTACTAGAGTAGGGGTATGATGGGGTACTACTAGAGTAGGGGTATGATGGGGTACTACTAGAGTAGGGGTATGATGGGGTACTACTAGAGTAGGGGTATGATGGGGTACTACTATAGAGTAGGGGTATGATGGGGTACCACTAGATGGGGTACTACTAGAGTAGGGGTAGGATGGGGGCGTAGGCTATGTCACTATTTGTTCcaccaaaataaatatgaaatgcCCTCTTGAAAGTCAACAAATGTGTAGGCAAATTGTGCAACCCTGTTTTATTAAATAAGTGTGTGCTCATTTCCGGACAGTATTACAAAAGGGGGACATTCTAGAAATACAATCTAGCttgaaatgaggtaaaatggcaCCCTTTTTCAATTAGGAAAACTTGAGAAGGCTCCATTCCAACATTTGGTCCACTGGTAGTGTTCCATTGATCGTATTATATAAACGgatccttcagaaagtattcatacaccttgatTCATTCCACATTTTTCTTGTGTtttcctgaatttaaaatggatttaaaaaacaaattgtctctcacatctacacacaatacccgacaaagtgaaaacatgtttttagaaattttgccAAATttaattgaaaattaaatacagaatgatctcatttacatgagtattcacacCCCGTAGCCAATACTTTGTTTCTAAGTacctttagcagcaattacagcaattacagctgtccCAGTCTTTCAGGGGTTAGTCTCTAAGAACTTTCCACTCCATTTATTATGCTTCCTTCTTTTCTCgctgtcagttaggttagtaaCTACTACATTGTTGATCCACCCTCTGTCATTAAAACATcatcactattattgcacacagagtgagtccatgcaacttattatgtgacttgttaagcacatttttttacTCATggacgtatttaggcttgccataacaaaagggttgaatacttcttTTTTTCACGACATTTCCGATTTtcattttttaattaatttgtaaaaaataaaataaaaaaacataattccactttgccgttatgtggtattgtgtgtaggccagtgacacatctcaatggaatccattttaaattcaggctgtaacataacaaaatgtggggaaagtcaaggggtgtgaatactttctagaAGGCTCTGTATATTAGGCTGCTTTATGCTTCATTACAATCATTTCGTGTCATTTACagttaattatatatttttcacCTCAAGGCCCTTTCTAAAAGTCCTGAATTATGAAGCCACATGTCACATTTTGAGAAATATACCACAAGATCTGTTTGACGAGGATATAAATCATATTTCCATTtctcacaaaaaaaatgtatttggggACAATTATGTTGGGATATGTCATTACTTGACAACATTGACTTCCTGTCTTTCTGTAATACATGAAAATGGTTCAAACCTAGGAATCGAATGTCCCTATGCACAGTAGGCTATCTGTGGTTAAGGAATGGTTCATGACACTACAAAATGGGCCGAGACAATGGGGTTTAGTTGCAGAGTGTAAACTCAACCTAACTTGTCTGTGGTGTGAATATAGTGTATTCAATTGGTTTCCaaatgtgttttaatgtttaAGCTACTCACCAGTAATACTTGGGCGTATTGAGAGGCTGAATGAGAAATATAGAGGTGATTTTTGCCcagctaatatactgtaggatggGCCCATCAATGCAATGACGCAACAAACACACAGCCCACTAAGAGAGATGCTAAGGGTAGATTTTATTGTGTGCATTTTCTTTAGCACCACCTGACCCTTGGTAGTAACTTGTGACCTATAACCTTTGACCTATAATGTGTGGTAAAATTACACTAGAGATAAAAAAACAAACTTaagcttttgttgttgttgacatttgTTGGTCCGGTTTCATTCAATTAATATACCAATGTTTGTTGCCAAGTTTGTCTGAATATGACAGTATTTTATTGGTAATCATTGCTAACAAATGATTTACGGTAATCCTAATAATCAATCAGTTAAAAGGCTATTCAACATTTGGAGAAACTGatcattttagttttttttttttttgaggaaaACTTAAATTGTAAGTTTGATAAGTTTTAGTGCTATTATTTTTTAGTATTTTTAAACCACAATGTTTTCCCCTTTTGCGGCCAGCAGAAAACAGCTAGATTTGTCAGACTTAAAAGCCTACTGTTGGTAACATTTTATggcagtttttttattttaaaactgAGTTGTAGTTTTAGGATGTTTTAAGAGGAGGTTGCTCTGGTTTATCTGTTTGAAAAACtgtatgagaaaaaaaatctgtatttGTCTCACCGCCTCAACTGTGGACTTCCTATGGCTCAAACCTCACAGGAAACTCTGAAGAGAAGGAAACTACTTAGTATTTGTGTGTTTTCACTGAGAAAGCAGCTTTTAAGTTGTCTTCTTTTGTGTTCTGTTTTTAAATGGAGTAATATGACCCTCTGGCTTTGTGCTGTGTACCTGGTTTCATTGGGAAGACGTGAAAAGGGGAAATCCTCTTCCCACACTGCGCTTACTGCCAAGCTgtttaacacacacagagacaaagtgCATTTATGCACTTATTTGTCCTCCGAATAtcaataaatgttcatttgtTGGAAA

Function

symbol description
rbm15 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM15 (RNA binding motif protein 15).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988920.1 True 5515 mRNA 0.47 1 71563276 71568790

Neighbor

gene id symbol gene type direction distance location
prok1 prok1 coding downstream 122758 71432065 ~ 71440518 (-)
LOC100301637 LOC100301637 coding downstream 136657 71423205 ~ 71426619 (-)
dclre1b dclre1b coding downstream 387621 71158941 ~ 71175655 (-)
LOC110531262 LOC105023799 coding downstream 471359 70881668 ~ 71091917 (-)
LOC118966111 NA coding downstream 560615 71001152 ~ 71002661 (-)
LOC110517102 LOC106572846 coding upstream 14704 71583494 ~ 71593154 (-)
LOC110532802 kcnc4 coding upstream 265414 71834204 ~ 71899748 (-)
LOC110532805 LOC106566386 coding upstream 332791 71901581 ~ 71905774 (-)
LOC110532803 LOC106572868 coding upstream 338201 71906991 ~ 71955546 (-)
LOC110531271 nfya coding upstream 391748 71960538 ~ 71980385 (-)
G837727 NA non-coding downstream 4453 71554336 ~ 71558823 (-)
G837726 NA non-coding downstream 9104 71553825 ~ 71554172 (-)
G837764 NA non-coding downstream 17527 71545421 ~ 71545749 (-)
G837758 NA non-coding downstream 27629 71535425 ~ 71535647 (-)
G837743 NA non-coding downstream 57516 71505478 ~ 71505760 (-)
G837771 NA non-coding upstream 5399 71574189 ~ 71574491 (-)
G837781 NA non-coding upstream 19454 71588244 ~ 71588472 (-)
G837757 NA non-coding upstream 55134 71623924 ~ 71629614 (-)
G837804 NA non-coding upstream 73699 71642489 ~ 71643342 (-)
G837809 NA non-coding upstream 81718 71650508 ~ 71650707 (-)
LOC110531265 plagl2 other downstream 1134318 70427951 ~ 70479312 (-)
G836619 NA other downstream 1353651 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1478579 70082681 ~ 70084697 (-)
G835808 NA other downstream 2131376 69431567 ~ 69431900 (-)
G835608 LOC106572767 other downstream 2504982 68979883 ~ 69058294 (-)
G837952 NA other upstream 252807 71821597 ~ 71822337 (-)
G838098 NA other upstream 366088 71934878 ~ 71936573 (-)
G838204 NA other upstream 549871 72118661 ~ 72119287 (-)
G839372 NA other upstream 1458185 73026975 ~ 73028966 (-)
G839553 NA other upstream 1892565 73461355 ~ 73463040 (-)

Expression


Co-expression Network