LOC110517102 (LOC106572846)


Basic Information

Item Value
gene id LOC110517102
gene name LOC106572846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71583494 ~ 71593154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988921.1
CAGAAACCTTGCTTTCACTGTAACCGGGACCAGAGTAGAGTCGTTAAAGTGCATCCCGGACTGACCTCATGATGGAGGCGGACAGTTGTTTATCTTTCTCTTCGCAGCCAAACCGGACAACACTGAATAGCTCTCCCGGTTTGGATCAGAATAGTTCTGGAGGTTCGTTCCTTCCCTGCGATGAACTACAGAAAAGTACACATCTTCCTCTCGCTCACCGTCTGAGTCTCCGGGATCAGGGTGACTTCTACAGCTCAAGCTCCATGGGACGGTTTAACGACGGCGCGCCCGCGGACTTTACGCACGGGGCAGCCTCCACGAATCCTCGCGCCTTGCCCAACAAACACAGCAAATACATGGAAAATATTAATCAGGACCAAAAGGTTTTATCAGTAAGCGGGAAGGGCTCGTTTTATGACAATTACTCGGAGGCCAGAGAGAAGGCGGGTCCCAAGCCCATGGGCTATCCCGTGATTGGCTCAGACTGCTGCATCAAGCTGAAGGAGCCAACCAACGGTCTCCAACCAGGGGACTCCATAGCAGACTCCATCGACCTATCGGGCAAGAACAAGAAACGTCGTAACCGCACCACGTTCAGTACCTTCCAGTTGGAGGAGCTGGAGAAAGTGTTTCAGAAGACTCACTACCCTGACGTTTACGCCCGGGAACAGCTGGCCCTCAGGACCGAACTCACAGAGGCCCGTGTACAGGTGTGGTTCCAGAACCGCCGGGCcaagtggaggaagagagaacgCTATGGGAAGATCCAGGAGGTGCGAAACCACTTTGCTGCTACGTATGATATCTCTACGTACCAGATGCAGAGCAACCTGTGGCCAGGTGCAGGAGGGGGGTCCGGCGGGGGCTGTGTCCTGGGCCCTGACACCATGTCTTCCTCCTGTATGAGCCCTTACCCCCATCCCCACAGCAACCTCCCCTCTGTGGGCTTCATGGGCATGCCCCCGTCCTCCAGCCACCCACACCACCCTCACCATCACCCCCAACACCACCCTGGCATCAACGGCCTCTACTCCCTCCACAGCTTCCCTGGGGCCCTCGGGGGCCACTCCTTTGAGCCGGGGCCCGAGACAGAGTATAAGTCATCCAGTCTGTTGGCCATGCGGATGaaggctaaggaccctgggagtcTTCTATCCAGGCCTACATGACCACCACAGTGTCAGGGTCAGATCCCTACTATGTATTGACTGAGCtaatgcattcacacacacattcaaactcAATCTTGTATGCTAGCAACCCGATGGATAGTTATGGCCACATGTATTTGTGTTCCTGCATGTTGAAATGACAGCAGAAGTCAAAACTctacacgcatgcacgcacacatacacacacacacacacacacacacacacacacacacacacacacacacac
>XM_036988922.1
CAGAAACCTTGCTTTCACTGTAACCGGGACCAGAGTAGAGTCGTTAAAGTGCATCCCGGACTGACCTCATGATGGAGGCGGACAGTTGTTTATCTTTCTCTTCGCAGCCAAACCGGACAACACTGAATAGCTCTCCCGGTTTGGATCAGAATAGTTCTGGAGGTTCGTTCCTTCCCTGCGATGAACTACAGAAAAGTACACATCTTCCTCTCGCTCACCGTCTGAGTCTCCGGGATCAGGGTGACTTCTACAGCTCAAGCTCCATGGGACGGTTTAACGACGGCGCGCCCGCGGACTTTACGCACGGGGCAGCCTCCACGAATCCTCGCGCCTTGCCCAACAAACACAGCAAATACATGGAAAATATTAATCAGGACCAAAAGGTTTTATCAGTAAGCGGGAAGGGCTCGTTTTATGACAATTACTCGGAGGCCAGAGAGAAGGCGGGTCCCAAGCCCATGGGCTATCCCGTGATTGGCTCAGACTGCTGCATCAAGCTGAAGGAGCCAACCAACGGTCTCCAACCAGGGGACTCCATAGCAGACTCCATCGACCTATCGGGCAAGAACAAGAAACGTCGTAACCGCACCACGTTCAGTACCTTCCAGTTGGAGGAGCTGGAGAAAGTGTTTCAGAAGACTCACTACCCTGACGTTTACGCCCGGGAACAGCTGGCCCTCAGGACCGAACTCACAGAGGCCCGTGTACAGGTGTGGTTCCAGAACCGCCGGGCcaagtggaggaagagagaacgCTATGGGAAGATCCAGGAGATGCAGAGCAACCTGTGGCCAGGTGCAGGAGGGGGGTCCGGCGGGGGCTGTGTCCTGGGCCCTGACACCATGTCTTCCTCCTGTATGAGCCCTTACCCCCATCCCCACAGCAACCTCCCCTCTGTGGGCTTCATGGGCATGCCCCCGTCCTCCAGCCACCCACACCACCCTCACCATCACCCCCAACACCACCCTGGCATCAACGGCCTCTACTCCCTCCACAGCTTCCCTGGGGCCCTCGGGGGCCACTCCTTTGAGCCGGGGCCCGAGACAGAGTATAAGTCATCCAGTCTGTTGGCCATGCGGATGaaggctaaggaccctgggagtcTTCTATCCAGGCCTACATGACCACCACAGTGTCAGGGTCAGATCCCTACTATGTATTGACTGAGCtaatgcattcacacacacattcaaactcAATCTTGTATGCTAGCAACCCGATGGATAGTTATGGCCACATGTATTTGTGTTCCTGCATGTTGAAATGACAGCAGAAGTCAAAACTctacacgcatgcacgcacacatacacacacacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: homeobox protein aristaless-like 3 isoform X2

GO: NA

KEGG:

id description
K09323 ALX3; homeobox protein aristaless-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988921.1 False 1401 mRNA 0.54 4 71583494 71593154
XM_036988922.1 True 1356 mRNA 0.55 4 71583494 71593154

Neighbor

gene id symbol gene type direction distance location
rbm15 rbm15 coding downstream 14704 71563276 ~ 71568790 (-)
prok1 prok1 coding downstream 142976 71432065 ~ 71440518 (-)
LOC100301637 LOC100301637 coding downstream 156875 71423205 ~ 71426619 (-)
dclre1b dclre1b coding downstream 407839 71158941 ~ 71175655 (-)
LOC110531262 LOC105023799 coding downstream 491577 70881668 ~ 71091917 (-)
LOC110532802 kcnc4 coding upstream 241050 71834204 ~ 71899748 (-)
LOC110532805 LOC106566386 coding upstream 308427 71901581 ~ 71905774 (-)
LOC110532803 LOC106572868 coding upstream 313837 71906991 ~ 71955546 (-)
LOC110531271 nfya coding upstream 367384 71960538 ~ 71980385 (-)
LOC110531272 LOC106572865 coding upstream 391980 71985134 ~ 72035813 (-)
G837771 NA non-coding downstream 9003 71574189 ~ 71574491 (-)
G837727 NA non-coding downstream 24671 71554336 ~ 71558823 (-)
G837726 NA non-coding downstream 29322 71553825 ~ 71554172 (-)
G837764 NA non-coding downstream 37745 71545421 ~ 71545749 (-)
G837758 NA non-coding downstream 47847 71535425 ~ 71535647 (-)
G837757 NA non-coding upstream 30770 71623924 ~ 71629614 (-)
G837804 NA non-coding upstream 49335 71642489 ~ 71643342 (-)
G837809 NA non-coding upstream 57354 71650508 ~ 71650707 (-)
G837827 NA non-coding upstream 85124 71678278 ~ 71678514 (-)
G837828 NA non-coding upstream 85883 71679037 ~ 71679265 (-)
LOC110531265 plagl2 other downstream 1154536 70427951 ~ 70479312 (-)
G836619 NA other downstream 1373869 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1498797 70082681 ~ 70084697 (-)
G835808 NA other downstream 2151594 69431567 ~ 69431900 (-)
G835608 LOC106572767 other downstream 2525200 68979883 ~ 69058294 (-)
G837952 NA other upstream 228443 71821597 ~ 71822337 (-)
G838098 NA other upstream 341724 71934878 ~ 71936573 (-)
G838204 NA other upstream 525507 72118661 ~ 72119287 (-)
G839372 NA other upstream 1433821 73026975 ~ 73028966 (-)
G839553 NA other upstream 1868201 73461355 ~ 73463040 (-)

Expression


Co-expression Network