LOC110532802 (kcnc4)


Basic Information

Item Value
gene id LOC110532802
gene name kcnc4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71834204 ~ 71899748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036988924.1
atactTCTGGTTGGAGAAGCAACAGATCCTTAATGTTCCCTGAAAAACAacctcacatcacatctcattCGCCTCCAGGAAGACATCATCGCAAATTGATGGAATATTCCAAAGCACGCGTCGCGCGCATTTAGTCATTTAGATCATTATTGGGGTCAACTTCCATGTTTAGGAAATGTGTTTTAAAAAATTGGGGGGGGTCTGGCGGATTTTGTGATTTTTGTGAATTTTCGGATAAGGAATAATGCAACAATAGGTGAGGACCTTGGGTTATTACTCCCAAAAATTAATCTAGAAATAGACTTTCTTTAAATTGGCACATTTTGTAGATTTGATGTAGAATATAACACTCCCAATATTCCATAGCATAATCTGAAACTATCGTTGAAGGTCGCCAAGTATCCATGACTGAACTGTTGAATCTTTGAAGCCTATTTTCCGCAACAACTTCTGCTTATTTATAGACATTATTCAACAAATATTTTGACCACAAAAGCCTGCCTAGTCCAGATATTATATAGATGTTTTGAGATTGCAACCTATAGATAAGAGTCGTTAGGGGAGTTGTAGCCTTTATAACAGGAGGTTTTAGTCAAGGgcactctctctgcctgcctgccgctCGCATTGGACTTGTTGAAAGCAACAACTGTCCCCGGTACAGTTGGATACATGAGTAGTATTATAACAAGGACTGACATGAGGAAAAACTCAATTGTCACCGTGTGATTCACCGAGATATAATAACTGAATAACAAATTAACGGAATAACCAACCGTCTCTCCATCTAAATCTATGATTAACTCGGTGTGTGTTTCGTCTTACCGAGGACGCAAATCAGGCAACAAACCTCCGTCCAAGACATGCCTGAAGGAAGAGATGACCAGGGGGGAAGACTCTGAAAAAATAATCATCAATGTTGGTGGCACAAGACACGAAACCTACAAAAGCACAATTAGGACCCTACCGGGGACGCGCCTGGCATTGTTAGCCGACCCGCCAGAGCCGGTGAACAACCCAGACACGGACTCCCTCCCACCGACTCCCTCCCTACCCAGATCCATATCTCCATATCCAACTACAAACGAGTTATTTTTCGACAGGCACCCTGGCATATTCGCTTATGTGTTGAACTATTATAGGACTGGCAAGCTCCATTGCCCCGCCGATGTCTGCGGGCCTCTTTTTGAAGAGGAGTTGGCGTTTTGGATGATAGATGAGACCGACGTGGAGCCGTGTTGCTGGATGACATACCGGCAGCATCGGGACGCAGAGGAGGCGCTGGACATATTCGAACCACCGGACCCAGATGACACGGACGATGAACTACCCAGACGGTTCGGCATTGAGGACTGCCCGGACCGATCGAGGGGATGCTGCGAAGTTTGGCAACCAAAGATATGGGCACTCTTTGAGGACCCCTACTCATCCAGGGCTGCTAGAGGTATAGCGTTTGCCTCTCTGTTCTTTATCCTGATTTCCATCACTACGTTCTGCCTGGAGACTCACGAGTACTTCAACGACCTGCAGAACCACACGGAACGCGTGGTGGTGGGGAACCACACTGAGGAGGTGATCTTGGTGAAGGTGGTGACCAAGCCCATTCTGACCGTGGTGGAGGGTGTTTGTGTGGTCTGGTTCACCTTTGAGTTCTTCGTCCGCATCGTGTGCTGCCCCGACAAGCTGCTCTTCATCAAGAACATGTTAAACGTCATTGACTTCGTGGCCATCCTGCCCTTCTACCTGGAGATGGGCCTCAGCGGCCTGTCCTCCTCTAAAGCAGCCTCCGACATCCTGGGGTTTCTACGGGTAGTCCGTTTCGTCCGGATCCTCCGGATCTTCAAGCTGACCAGGCATTTCGTCGGTCTGAGGGTTCTCGGCCACACGTTGAGAGCCAGCGTCAACGAGTTCTGCCTGCTTATTGTTTTCCTGGCGTTGGGCGTCCTCATCTTCGCCACGATGATCTACTACGCAGAGCGGATAGGGGCCCAACCGGACGACCCCCGCGGCTCTAAACACACCCACTTCAAAAACATCCCTATCTCCTTCTGGTGGGCCGTGGTCACCATGACCACCCTGGGCTACGGGGACATGTACCCCAAGACGTGGCTGGGCATGATAGTGGGCGCGCTGTGCGCCCTGGCGGGGGTGCTGACCATCGCCATGCCCGTGCCTGTTATAGTCAACAACTTTGGGATGTACTACTCCCTGGCCATGGCTAAACAGAAGCTGCCTAAGAAGAAGAAAGCACACAATCCGAACCCGGACGCTCCCACGGACACGCCCTCCTTCGGGAAGTCTGTCGCTACCTCTCCCAGGGACAGTACTCAGAGTGATACATGGCCGCTGGCTGCAGAGGAGAATATCAACAGGAACCGCTCAGACTCCAAGCAGAACGGAGACGCCAACTTGGCTCTGTCGTCGGATGAGGGGTGCAGCCTGACCCAGCCACTGTCACCCAGCGAGAAGTGGAACCTACGGCACGGCCACGGCGACGGTCGAGAACACTCCCGGTCGGCCAGGGGGAACAAGAAAAGCAAGAAAGAGGCAACCTGCTTCCTGCTCACCTCCGGAGACTTCTCCTGCTCTGGAGGAGAACACACCATAGTCACGGAAAGCTGTACAGACATCCTGGCTGCTACTGGGCTCTACGCCCATCCAGAAATCACCACTCTGACCTGAAAAAGCCATTTTGGATTGATGAAAGACAAGTGGTCGTGAACCAGGGTGCATGGTGGCGAAGCTTCAGATTTaggcccctccctcccttctctaacTAACGTGAAGGTTCCTGGATCGTTCCCGGAAGGTTCCAGAAGAAGAACGCTTGTCTTTCTGTCGAGTACAAAGTAACCAAACTCCGCGGTAGAATCCTTCTATCTGATACTTTAGAAGATACAGTTATGTATGTACACACATCTGTCTGTTTTCCAAGCATTTAGCATGTATTGTATTGCATGATCTAGCACCATATAATGTACCTTGAGAAAATAATATCAGGTGAACGTTAATGTTAAGGGACATATCTAAAGTTGAGGAGTGTTTTGAACATCTCCTCTGATGTTAATACTCTTGAGTTTCAATCAAACATCAATATTTCCAAATGGTGTTTTCAAGAAATTGCCACTATGGCATTTGCTGATTCTGTTTTAAAAGTGTTCAATACACTATACGATCAGTTCATAGTCCTTGTGAAGAATCCTGAGACCAGAAACCATATGATGtttcagaaagaaaaaaaacggCAGTCTTTCATCAATGAAGCATAATTGGTAAATATTGACTAACTAAAATACAACACAAAATGTGTGGACTTGCATTGTCTAAAAAAAGTGACTGTGAACAAATTACAGCAGGATTAGAAGTACGAGTTGTTGTTCCAAGCCGACTGACTCCCAGCAAAAATATAGTCCAGCTTTGTTTTGATTTAAACATGACGGTGAACggcttcccgagtggcgcagcatcaCAGTGTTGCagcatcactacagcctggggttcgctTTAGTTGGCTCATCGCGctttagcgactccttgtggcgggccgggcgcctgcaggctgacttcggtcctcagtagaacagtgtttcctccgacacattgttgcGAGCGGGTGTTAAGGAGTGTGGCGGATGTTAAGAAGCGC
>TU953394
CCATCCAGAAATCACCACTCTGACCTGAAAAAGCCATTTTGGATTGATGAAAGACAAGTGGTCGTGAACCAGGGTGCATGGTGGCGAAGCTTCAGATTTaggcccctccctcccttctctaacTAACGTGAAGGTTCCTGGATCGTTCCCGGAAGGTTCCAGAAGAAGAACGCTTGTCTTTCTGTCGAGTACAAAGTAACCAAACTCCGCGGTAGAATCCTTCTATCTGATACTTTAGAAGATACAGTTATGTATGTACACACATCTGTCTGTTTTCCAAGCATTTAGCATGTATTGTATTGCATGATCTAGC

Function

symbol description
kcnc4 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to several human genes including KCNC4 (potassium voltage-gated channel subfamily C member 4).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036988924.1 False 3646 mRNA 0.49 5 71834204 71899748
TU953394 True 313 lncRNA 0.44 1 71834883 71835195

Neighbor

gene id symbol gene type direction distance location
LOC110517102 LOC106572846 coding downstream 241050 71583494 ~ 71593154 (-)
rbm15 rbm15 coding downstream 265414 71563276 ~ 71568790 (-)
prok1 prok1 coding downstream 393686 71432065 ~ 71440518 (-)
LOC100301637 LOC100301637 coding downstream 407585 71423205 ~ 71426619 (-)
dclre1b dclre1b coding downstream 658549 71158941 ~ 71175655 (-)
LOC110532805 LOC106566386 coding upstream 1833 71901581 ~ 71905774 (-)
LOC110532803 LOC106572868 coding upstream 7243 71906991 ~ 71955546 (-)
LOC110531271 nfya coding upstream 60790 71960538 ~ 71980385 (-)
LOC110531272 LOC106572865 coding upstream 85386 71985134 ~ 72035813 (-)
LOC110532812 LOC106572857 coding upstream 306698 72206446 ~ 72222104 (-)
G838059 NA non-coding downstream 2186 71831505 ~ 71832018 (-)
G837942 NA non-coding downstream 27558 71806427 ~ 71806646 (-)
G837930 NA non-coding downstream 41340 71792652 ~ 71792864 (-)
G837887 LOC106572845 non-coding downstream 57119 71742428 ~ 71777085 (-)
G837839 NA non-coding downstream 147181 71686689 ~ 71687023 (-)
G838091 NA non-coding upstream 27698 71927446 ~ 71928096 (-)
G838097 NA non-coding upstream 34363 71934111 ~ 71934364 (-)
G838098 NA non-coding upstream 35130 71934878 ~ 71936573 (-)
G838113 NA non-coding upstream 82887 71982635 ~ 71985080 (-)
G837952 NA other downstream 11867 71821597 ~ 71822337 (-)
LOC110531265 plagl2 other downstream 1405246 70427951 ~ 70479312 (-)
G836619 NA other downstream 1624579 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1749507 70082681 ~ 70084697 (-)
G835808 NA other downstream 2402304 69431567 ~ 69431900 (-)
G838204 NA other upstream 218913 72118661 ~ 72119287 (-)
G839372 NA other upstream 1127227 73026975 ~ 73028966 (-)
G839553 NA other upstream 1561607 73461355 ~ 73463040 (-)
rs21 LOC106572905 other upstream 1825504 73725252 ~ 73732414 (-)
G838062 NA non-coding upstream 3291 71838486 ~ 71838705 (-)
G838082 NA non-coding upstream 61811 71897006 ~ 71897978 (-)

Expression


Co-expression Network