LOC110532805 (LOC106566386)


Basic Information

Item Value
gene id LOC110532805
gene name LOC106566386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71901581 ~ 71905774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532805
atGTCTTCAGCAAAGGGAGTATCCATGGCATTGACCTGGGCATCACATACTCCTGTGTGGGGGTGTTCCAGCATGGCAAGGTGGAGATCATCGATGACGCAGCAAAGAACCAGGTGGCCATGAACCCCACCAACACTGTGTTTGATGCAATAAGCCTGATCGGCAGGAAGTTCAACGACCAGGAAGTTCAACGACCAGATCGTTCAGTCAGACATGAAGCTGTGGCCTTTCTAAGTGACCAACGATGGTGGGAAGCCCAAAGTCCTGGAGTACAAGGGAGAGACCAAGGGCTTCTACCCTGAAGAGATCTCCTCAAAGATCTCCTCAATGATCCTGGTTAAGATGAAGGAGATTGCTGAGGCCTACCTGGGCCAGAAGGTATCCAATGCAGTCATCACAGTCCCAGCCTACTTCAACGACTCCCAGAGGCAGGCTACTAAAGACGCTGGTGTGATCTCTGGTCTAAACGTCCTGAGGATCATCAATGAGCCCACAGCGGCGGCTATCACTggacaaggaaaagagagaggaacgCAATGTACTCATCTTTGATCTCGGCGGAGGCACCTTTTGACGTCTCCATCCTGACCATCGAGGACGGGATATTCGACGTGAATGCCGACACACACCTGGGAGTGGAGGATTTTGACAACCGCCTGGTCAACCACTTTGCGGAGGAGTTCAAGAGGAAGAACAAGAAGGACATCAGCCAGAACAAGAGGGCAGTGAGAAGGCTGAGAACAGCCTGTGTGAGGGCCAAGAGAACCCTCTCCTCCAGTTCCCAGGCCAGCATTGAGATCGACTCCCTCTTTGAAGGCATCGACTTCTACGCCTCCATCACCAGGGCTCGGTTTGAATAACTCAACTCTGAGCTATTCAGGGGAACCCTGGACCCTGTGGAAAAAGCCTTGAAAGATGCCAAGATGGACATGGCCCAGGTCCATGAAATCATTCTGGTTGGTGGCTCCACACGAAATCCGTAAGATCCAGAAGCTCTTGCACAACTTTTTCAACGGAAAGGAACTCAACAAGAGCATCAACCCAGATGAAGCGGTGGCATATGGTGCTGCCGTCCAGGCGGCCATCTTGATGCGCGACACCTCTAAGAATGTCCAGGACCTTCTCTTCTTGGACGTGGCTCCTCTGTCCCTGGGCATCGAGACAGCAGGAGGGGTCATGACCGCCCTGATCAAACGTaacaccaccatccccaccaaGCAGACACAGATCTTCTCCACCTATGCTAACAACCAGCCAGGTGTGCTCATCCAGGTgtacgagggagagagagccatgaCCAAGGACAATAATCTGCTTTGGAAGTTTGATCTCACAGGTATCTCTCCCGCTCCTAGAGGAGTTCCCCAAGTCGAGGTGACCTTCGACTTCGACGCTAACGGCATCCTGAACGTGTCGGCGGTGGATAAAAGTACCGGCAAGGAGAACAAGATCACCATCACCAACGACAAGGGGCAGCTCAGCAAAGAGGATGTTGAGAAGATGGTGCAGGACGCCAACAAAATACAAAGCTGAGGACGATGCCCAGAGGGAGAAGATAGCAGCCAAGAACGGTTTGGAGTCCTACACATTCAACATGAAGAGTAGTGTAGAAGATCCAAACCTGGCAGGGAAGATCAGCGAGGATGACAAGAAGAAGGTTGTTGAGAAGTGCAACCAAACTATCTCCTGGTTAGAGAGGCTGAGAAGGAGGAGTTTGAGTACCAGCAGAAGGAGCTGGAGAGAGTGTGTAACCCAATCGTATCCAAGTTCTACCAGGGAGGGCGGGAGGGGCTCCTCCAATGGGGAGCTGTGGAAGCCAGGCCGCGGGCGGGGCTAGCTCTCAGGGCCCTACCAGGAGGTGGACTAATCAATCAATCACTTAA

Function

NR:

description
heat shock 70 kDa protein-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532805 True 1883 mRNA 0.53 5 71901581 71905774

Neighbor

gene id symbol gene type direction distance location
LOC110532802 kcnc4 coding downstream 1833 71834204 ~ 71899748 (-)
LOC110517102 LOC106572846 coding downstream 308427 71583494 ~ 71593154 (-)
rbm15 rbm15 coding downstream 332791 71563276 ~ 71568790 (-)
prok1 prok1 coding downstream 461063 71432065 ~ 71440518 (-)
LOC100301637 LOC100301637 coding downstream 474962 71423205 ~ 71426619 (-)
LOC110532803 LOC106572868 coding upstream 1217 71906991 ~ 71955546 (-)
LOC110531271 nfya coding upstream 54764 71960538 ~ 71980385 (-)
LOC110531272 LOC106572865 coding upstream 79360 71985134 ~ 72035813 (-)
LOC110532812 LOC106572857 coding upstream 300672 72206446 ~ 72222104 (-)
LOC118966115 NA coding upstream 330354 72236128 ~ 72238619 (-)
G838082 NA non-coding downstream 3603 71897006 ~ 71897978 (-)
G838062 NA non-coding downstream 62876 71838486 ~ 71838705 (-)
G838059 NA non-coding downstream 69563 71831505 ~ 71832018 (-)
G837942 NA non-coding downstream 94935 71806427 ~ 71806646 (-)
G838091 NA non-coding upstream 21672 71927446 ~ 71928096 (-)
G838097 NA non-coding upstream 28337 71934111 ~ 71934364 (-)
G838098 NA non-coding upstream 29104 71934878 ~ 71936573 (-)
G838113 NA non-coding upstream 76861 71982635 ~ 71985080 (-)
G837952 NA other downstream 79244 71821597 ~ 71822337 (-)
LOC110531265 plagl2 other downstream 1472623 70427951 ~ 70479312 (-)
G836619 NA other downstream 1691956 70208678 ~ 70209625 (-)
LOC118966109 NA other downstream 1816884 70082681 ~ 70084697 (-)
G835808 NA other downstream 2469681 69431567 ~ 69431900 (-)
G838204 NA other upstream 212887 72118661 ~ 72119287 (-)
G839372 NA other upstream 1121201 73026975 ~ 73028966 (-)
G839553 NA other upstream 1555581 73461355 ~ 73463040 (-)
rs21 LOC106572905 other upstream 1819478 73725252 ~ 73732414 (-)

Expression


Co-expression Network