Item | Value |
---|---|
gene id | sypa |
gene name | syp |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048573.1 |
NCBI id | CM023227.2 |
chromosome length | 79455637 |
location | 76002239 ~ 76068967 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
syp | Enables cholesterol binding activity. Predicted to be involved in endocytosis; regulation of neuronal synaptic plasticity; and regulation of opioid receptor signaling pathway. Predicted to act upstream of or within cellular response to organic substance. Located in neuron projection. Implicated in non-syndromic X-linked intellectual disability 96. Biomarker of Alzheimer's disease. |
description |
---|
PREDICTED: synaptophysin-like |
id | name | namespace |
---|---|---|
GO:0006810 | transport | biological_process |
GO:0008021 | synaptic vesicle | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0005215 | transporter activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036989058.1 | False | 2855 | mRNA | 0.45 | 7 | 76044060 | 76068966 |
XM_036989059.1 | False | 2722 | mRNA | 0.44 | 6 | 76048694 | 76068966 |
TU957564 | False | 962 | lncRNA | 0.42 | 2 | 76002239 | 76068967 |
TU957563 | False | 970 | lncRNA | 0.42 | 2 | 76018324 | 76068967 |
TU957566 | False | 958 | lncRNA | 0.42 | 2 | 76018324 | 76068967 |
TU957560 | False | 844 | lncRNA | 0.41 | 2 | 76018450 | 76068967 |
TU957565 | False | 842 | lncRNA | 0.41 | 2 | 76018450 | 76068967 |
TU957562 | True | 940 | lncRNA | 0.42 | 2 | 76048881 | 76068967 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
cacna1fb | cacna1fb | coding | upstream | 5988 | 75827228 ~ 76038072 (+) |
LOC110532851 | LOC106572942 | coding | upstream | 705478 | 75269782 ~ 75338582 (+) |
LOC110516453 | LOC106566308 | coding | upstream | 1697746 | 74302007 ~ 74346321 (+) |
trnae-cuc-9 | NA | coding | upstream | 2698715 | 73345274 ~ 73345345 (+) |
LOC110532831 | LOC106572886 | coding | upstream | 2751841 | 73261772 ~ 73292219 (+) |
lhfpl4b | lhpl4 | coding | downstream | 11268 | 76080234 ~ 76094825 (+) |
LOC110533040 | LOC106572929 | coding | downstream | 248729 | 76317695 ~ 76323593 (+) |
fgd1 | LOC106591816 | coding | downstream | 378035 | 76447001 ~ 76556128 (+) |
LOC118966125 | NA | coding | downstream | 491269 | 76560235 ~ 76565682 (+) |
LOC118966126 | NA | coding | downstream | 498256 | 76567222 ~ 76568988 (+) |
G841352 | NA | non-coding | upstream | 135050 | 75908431 ~ 75909010 (+) |
G841330 | NA | non-coding | upstream | 211936 | 75831785 ~ 75832124 (+) |
G841325 | NA | non-coding | upstream | 218422 | 75825230 ~ 75825638 (+) |
G841309 | NA | non-coding | upstream | 229599 | 75813859 ~ 75814461 (+) |
G841439 | NA | non-coding | downstream | 12650 | 76081616 ~ 76081993 (+) |
G841443 | NA | non-coding | downstream | 27741 | 76096707 ~ 76097414 (+) |
G841453 | NA | non-coding | downstream | 48592 | 76117558 ~ 76120441 (+) |
G841472 | NA | non-coding | downstream | 83073 | 76152039 ~ 76152690 (+) |
G841483 | NA | non-coding | downstream | 100182 | 76169148 ~ 76169640 (+) |
G841007 | NA | other | upstream | 400405 | 75642962 ~ 75643655 (+) |
G840849 | NA | other | upstream | 695536 | 75346366 ~ 75348524 (+) |
G840863 | NA | other | upstream | 775374 | 75268132 ~ 75268686 (+) |
G840613 | NA | other | upstream | 1023970 | 75012332 ~ 75020090 (+) |
G840304 | NA | other | upstream | 1404468 | 74639339 ~ 74639592 (+) |
G841464 | NA | other | downstream | 71771 | 76140737 ~ 76141482 (+) |
G841465 | NA | other | downstream | 72583 | 76141549 ~ 76142395 (+) |
G841510 | LOC106572922 | other | downstream | 166074 | 76235040 ~ 76238802 (+) |
G841797 | NA | other | downstream | 806943 | 76875909 ~ 76876873 (+) |
LOC110532834 | NA | coding | upstream | 3089538 | 72911783 ~ 72913249 (+) |