XLOC_026785


Basic Information

Item Value
gene id XLOC_026785
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52194623 ~ 52196824 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052502
TGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGCCCTTTGGTGAAAATGAGGGACATGAGAATgccATCACACAGTCGGACGGAGGCTTCAACAGAGCCAATGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAATTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGACTATTGACATCAGACTCTTACTGA
>TCONS_00053133
CCCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGTGAGTGAAATTCATTAAAATTCGTCTACGATAGTAAATATTTCTTCCACTCTGCGTGAGAATGTTTTGTGTTAGTTGTCCAAGAagttatttttgttacttttattatgttttcatgTTTCGTACTCCTGATACACGGGACTTGGCAACTCTGTCATGTAACATTAACTTTAGCCGCGCAAGCTAACGCATCTGGCGCGTCTTTTGTAAAGCTGCGTTGGCACTTGGCAGAATTGTTAATAATAAGTTACATATAAGGCGAAAGACTTACCCTAAATATGTACTGCATTTTGGTGTAAGAGTTGCCGTCACTTTAAAAAGCCTCTGCGTCTCTGACACTCGAGGTAACGCTACCAGATATAATTTATGCATTTAACGTTACGTTATTATCATAAGGTTATTTAATATATAACCTTATATGAAGCTCTGCGGCAGGAATTTAAACATAAATCCCTTGTCGTAACGTTAGTTGGGTGCTTTGTACAGACACCAAATGGCGCCGAGGTGTGAGCAAATTCATAAACAATAGCTAAAATATGAAGATCTTTAATGTACTCAATTTTGCGCGCCATTTTGTGGTACCCTACTAGTCGCATACTAtttaaaagtgtactttttaTTGTCATACACAGTTACAGGTGTTTGTTTTCTCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacattaatatatttctccctttatattactatagataaacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatatattaaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGAAGTACCACTGTTTGGTCAATTTTTTGTTTGTCAATGTTTGTGTATAAGCAATTTATgcaactgtatttgtttttttactttttttagctATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATGTAAGaatgtttttacattataaacTGAATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatgtcaggaggattttttttttttgctaggccATCACACAGTCGGACGGAGGCTTCAACAGAGCCAATGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTAcacagacatttatttcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTG
>TCONS_00052503
CCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGTGAGTGAAATTCATTAAAATTCGTCTACGATAGTAAATATTTCTTCCACTCTGCGTGAGAATGTTTTGTGTTAGTTGTCCAAGAagttatttttgttacttttattatgttttcatgTTTCGTACTCCTGATACACGGGACTTGGCAACTCTGTCATGTAACATTAACTTTAGCCGCGCAAGCTAACGCATCTGGCGCGTCTTTTGTAAAGCTGCGTTGGCACTTGGCAGAATTGTTAATAATAAGTTACATATAAGGCGAAAGACTTACCCTAAATATGTACTGCATTTTGGTGTAAGAGTTGCCGTCACTTTAAAAAGCCTCTGCGTCTCTGACACTCGAGGTAACGCTACCAGATATAATTTATGCATTTAACGTTACGTTATTATCATAAGGTTATTTAATATATAACCTTATATGAAGCTCTGCGGCAGGAATTTAAACATAAATCCCTTGTCGTAACGTTAGTTGGGTGCTTTGTACAGACACCAAATGGCGCCGAGGTGTGAGCAAATTCATAAACAATAGCTAAAATATGAAGATCTTTAATGTACTCAATTTTGCGCGCCATTTTGTGGTACCCTACTAGTCGCATACTAtttaaaagtgtactttttaTTGTCATACACAGTTACAGGTGTTTGTTTTCTCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAgTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatatattaaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGA
>TCONS_00052504
CCAGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGAGATGGAAGTCGAGGAACAAATTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCGGACTCATTAGAAAGAAGTGTGCACTCATTACAgTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052502 False 508 lncRNA 0.42 5 52194623 52195739
TCONS_00053133 False 2171 lncRNA 0.35 1 52194654 52196824
TCONS_00052503 False 1219 lncRNA 0.36 3 52195447 52196823
TCONS_00052504 True 328 lncRNA 0.43 4 52195659 52196823

Neighbor

gene id symbol gene type direction distance location
XLOC_026784 BX908776.1 coding downstream 104619 52064001 ~ 52090004 (-)
XLOC_026782 aatka coding downstream 282604 51899578 ~ 51912019 (-)
XLOC_026783 dre-mir-338-3 coding downstream 287061 51907486 ~ 51907562 (-)
XLOC_026781 NA coding downstream 296840 51892719 ~ 51897783 (-)
XLOC_026780 NA coding downstream 534567 51625603 ~ 51660056 (-)
XLOC_026786 BX897682.1 coding upstream 18221 52215045 ~ 52217251 (-)
XLOC_026787 trim35-13 coding upstream 410215 52607039 ~ 52614747 (-)
XLOC_026788 si:dkey-210j14.3 coding upstream 444913 52641737 ~ 52644737 (-)
XLOC_026789 zgc:113210 coding upstream 450320 52647144 ~ 52661242 (-)
XLOC_026790 si:dkey-210j14.4 coding upstream 470875 52667699 ~ 52674118 (-)
XLOC_026779 BX005299.1 non-coding downstream 646373 51548133 ~ 51548250 (-)
XLOC_026793 NA non-coding upstream 878023 53074847 ~ 53076911 (-)
XLOC_026796 NA non-coding upstream 1033886 53230710 ~ 53232495 (-)
XLOC_026797 NA non-coding upstream 1252292 53449116 ~ 53452782 (-)
XLOC_026802 NA non-coding upstream 1376307 53573131 ~ 53589177 (-)

Expression


Co-expression Network