XLOC_026786 (BX897682.1)


Basic Information

Item Value
gene id XLOC_026786
gene name BX897682.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52215045 ~ 52217251 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052113
AGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTGTATAGAAGAGGTTgttaaagagttaaattttataATCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAACTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATAGCCAAACTTGACAAATGCACCGCAAAACTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTAACTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTGTGAGtattacaatgttttaaaattaaaattaaatcttcCCTTGACAAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTGATAATATGTGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCATAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCCTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTAGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTtacatatgtttgtttataataatacaaatgttacATGTTTAACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTAAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacactgaaaactgtgtttctaaataaataaaaagttactgaaattaaaa
>TCONS_00052114
AACATTTATGGTACATTTGCTTCCCACAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTGTATAGAAGAGGTTgttaaagagttaaattttataATCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAACTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATAGCCAAACTTGACAAATGCACCGCAAAACTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTAACTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCTAATACACAAGAATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGAACCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTGATAATATGTGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCATAAGCTGTTTCTTGAACTTGATGGACTGAAGCCCAGTGCAAAAGTAATGCCTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTAGCTCTTTATGTTGCaactatattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGCATTtacatatgtttgtttataataatacaaatgttacATGTTTAACAATTAAGGTTAGCTAATAACAAGTAGTttgtaaaatgtacaatttataaGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGTTGGAATTCATTGTGATGGCATAGCTATGCATGCATGCACATTTTTGAAGGCAAAGCTGACGGGTAAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacactgaaaactgtgtttctaaataaataaaaagttactgaaattaaaa
>TCONS_00052115
ACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGAGCTGTCTGATGAAGGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaatggctttgttgtttctaaaactggaGAGCACTTTTAATGTATCTTACAGGTGTATAGAAGAGGTTgttaaagagttaaattttataATCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAACTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATAGCCAAACTTGACAAATGCACCGCAAAACTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTAACTTGGAGAGAAAGAAGAGGATCTTTTTAAGGAGTTTGCT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048732 gland development biological_process
GO:0021536 diencephalon development biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0060429 epithelium development biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0007417 central nervous system development biological_process
GO:0030903 notochord development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096946

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052113 False 1199 lncRNA 0.35 6 52215045 52217224
TCONS_00052114 False 1179 lncRNA 0.35 6 52215045 52217251
TCONS_00052115 True 612 lncRNA 0.40 4 52216191 52217213

Neighbor

gene id symbol gene type direction distance location
XLOC_026785 NA coding downstream 18221 52194623 ~ 52196824 (-)
XLOC_026784 BX908776.1 coding downstream 125041 52064001 ~ 52090004 (-)
XLOC_026782 aatka coding downstream 303026 51899578 ~ 51912019 (-)
XLOC_026783 dre-mir-338-3 coding downstream 307483 51907486 ~ 51907562 (-)
XLOC_026781 NA coding downstream 317262 51892719 ~ 51897783 (-)
XLOC_026787 trim35-13 coding upstream 389788 52607039 ~ 52614747 (-)
XLOC_026788 si:dkey-210j14.3 coding upstream 424486 52641737 ~ 52644737 (-)
XLOC_026789 zgc:113210 coding upstream 429893 52647144 ~ 52661242 (-)
XLOC_026790 si:dkey-210j14.4 coding upstream 450448 52667699 ~ 52674118 (-)
XLOC_026791 si:dkey-210j14.5 coding upstream 459326 52676577 ~ 52683241 (-)
XLOC_026780 NA non-coding downstream 554989 51625603 ~ 51660056 (-)
XLOC_026793 NA non-coding upstream 857596 53074847 ~ 53076911 (-)
XLOC_026796 NA non-coding upstream 1013459 53230710 ~ 53232495 (-)
XLOC_026797 NA non-coding upstream 1231865 53449116 ~ 53452782 (-)
XLOC_026802 NA non-coding upstream 1355880 53573131 ~ 53589177 (-)
XLOC_026804 BX004869.1 non-coding upstream 1472059 53689310 ~ 53689428 (-)

Expression


Co-expression Network