lrrc23 (lrrc23)


Basic Information

Item Value
gene id lrrc23
gene name lrrc23
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77238830 ~ 77253709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989109.1
AATCATGGTTATATTCAGGGAGATTTGACTTTCTTTACAGAATATTTTTTTCATGCAAAGTTGCAGGAAAGATCTCCCTCTGACTGCTGATCTTGTTTCCATGGAAACGACACCATAAACGCTGTGGCTAACTCACTCAGtgACGTTCACTTGTCCCCAGCCCAAACTGTTAAACGGAGAGCAGGATGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCGCGAATGAGGATGGACAGGAGGAAAATATGTCAGAAAAAGAGGACCAGATCGAGCCATGCCCTCTGACCAAGGAGATTCTGATCCCCGGTTTGTCTCTTTTGTGTCGTACCGGGAACGGCCTGGCACACGCCTTCGTTAAGCTCCAACTGGAAAACAGacgTCTGACAGACATGACCCTGGTCAGCTCGTTTGTCCACCTGCGTTTCCTGGACGTGTCATCCAACCACCTCTCTGACCTTTCACCCCTGGCTGCCCTCACACAGCTGCTGTGGCTGAAGggcGATGGTAACATGGTGGCCGGGTTCAGAGGTCAGCCCCTGGGTCAGCTGACATACCTACAGTGGCTGAGTCTGGCCCTGAACCGCCTCAAAGACCTGGAAGGCCTAGAAGGCCTCGGCCTAGAGAGCCTCAACCTCATTGGTAACGGTATCCAGAGGGTGTCGGGGCTACGGTACCATCACCTGACCAACCTGGTGACTCTGGAACTGAGAGGAAACAAACTGGAGACCACCGACGGGATATACCTACCCAACCTCCGACGCCTCTACCTGGCCCAGAATACTATCAAGCGCCTGGAGGGTCTGGGTAAGCTGGAGCGTCTGACCACCCTGCACCTCCGAGACAACCAACTGGAGACTCTAGATGGCATCAGTCCCAACATGAAGTCCCTGCAGTACCTCAACATCAGGGGTAACCTGGTGTCTGCCCAGCGTGCCTTGCGTAGTCTGGTGGGCGTATCCAGGACATTGCGAGCGCTGGTCCTAGCGGAAAACCCTCTCGTGGAGACGGAGGACTACCGTCTGTGTGTCCTGAGCCGCCTGCCGTTGCTGGAGCGCCTCGACAAGGAACCCATCTCTCCTGAGGAGAAGTCTGAGGCCCAGGAGAAACTCAGGgagTTTAATGATGAGGTGTCTGTTGGGGCAGAGGAATACTAACTCACCATCACTCAGTGTCTCCTCTCCCAGTCACTCTTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTGACTTCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTGACTCCTCTTCCAGTCACCCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACTCCTCTCCCAATGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACCCTTCTCCCAATGACTCCTCTCCCAGTCACCCCTCTCCCAGTGACCCCTCTCCCAGTCACCCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCACCAGTCCACATCGAAGACCTACATAGATCCTTGTGTGTGTGAACAAGTTTGTACTAGCTAGTTAAATGTATTCCTGGTATATTAACCAATGAAGATTGTGTTTATAGACAACTAGAGACGCTCTATtttcaaaacaataaacattTATTGATTGGTAAAAATGTA
>XM_036989106.1
AATCCATAATCATGGTTATATTCAGGGAGATTTGACTTTCTTTACAGAATATTTTTTTCATGCAAAGTTGCAGGAAAGATCTCCCTCTGACTGCTGATCTTGTTTCCATGGAAACGACACCATAAACGCTGTGGCTAACTCACTCAGtgACGTTCACTTGTCCCCAGCCCAAACTGTTAAACGGAGAGCAGGATGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCGCGAATGAGGATGGACAGGAGGAAAATATGTCAGAAAAAGAGGACCAGATCGAGCCATGCCCTCTGACCAAGGAGATTCTGATCCCCGGTTTGTCTCTTTTGTGTCGTACCGGGAACGGCCTGGCACACGCCTTCGTTAAGCTCCAACTGGAAAACAGacgTCTGACAGACATGACCCTGGTCAGCTCGTTTGTCCACCTGCGTTTCCTGGACGTGTCATCCAACCACCTCTCTGACCTTTCACCCCTGGCTGCCCTCACACAGCTGCTGTGGCTGAAGggcGATGGTAACATGGTGGCCGGGTTCAGAGGTCAGCCCCTGGGTCAGCTGACATACCTACAGTGGCTGAGTCTGGCCCTGAACCGCCTCAAAGACCTGGAAGGCCTAGAAGGCCTCGGCCTAGAGAGCCTCAACCTCATTGGTAACGGTATCCAGAGGGTGTCGGGGCTACGGTACCATCACCTGACCAACCTGGTGACTCTGGAACTGAGAGGAAACAAACTGGAGACCACCGACGGGATATACCTACCCAACCTCCGACGCCTCTACCTGGCCCAGAATACTATCAAGCGCCTGGAGGGTCTGGGTAAGCTGGAGCGTCTGACCACCCTGCACCTCCGAGACAACCAACTGGAGACTCTAGATGGCATCAGTCCCAACATGAAGTCCCTGCAGTACCTCAACATCAGGGGTAACCTGGTGTCTGCCCAGCGTGCCTTGCGTAGTCTGGTGGGCGTATCCAGGACATTGCGAGCGCTGGTCCTAGCGGAAAACCCTCTCGTGGAGACGGAGGACTACCGTCTGTGTGTCCTGAGCCGCCTGCCGTTGCTGGAGCGCCTCGACAAGGAACCCATCTCTCCTGAGGAGAAGTCTGAGGCCCAGGAGAAACTCAGGgagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGTTGGGGCAGAGGAATACTAACTCACCATCACTCAGTGTCTCCTCTCCCAGTCACTCTTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTGACTTCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTGACTCCTCTTCCAGTCACCCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACTCCTCTCCCAATGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACCCTTCTCCCAATGACTCCTCTCCCAGTCACCCCTCTCCCAGTGACCCCTCTCCCAGTCACCCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCACCAGTCCACATCGAAGACCTACATAGATCCTTGTGTGTGTGAACAAGTTTGTACTAGCTAGTTAAATGTATTCCTGGTATATTAACCAATGAAGATTGTGTTTATAGACAACTAGAGACGCTCTATtttcaaaacaataaacattTATTGATTGGTAAAAATGTA
>XM_036989107.1
ATAATCCATAATCATGGTTATATTCAGGGAGATTTGACTTTCTTTACAGAATATTTTTTTCATGCAAAGTTGCAGGAAAGATCTCCCTCTGACTGCTGATCTTGTTTCCATGGAAACGACACCATAAACGCTGTGGCTAACTCACTCAGCCCAAACTGTTAAACGGAGAGCAGGATGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCGCGAATGAGGATGGACAGGAGGAAAATATGTCAGAAAAAGAGGACCAGATCGAGCCATGCCCTCTGACCAAGGAGATTCTGATCCCCGGTTTGTCTCTTTTGTGTCGTACCGGGAACGGCCTGGCACACGCCTTCGTTAAGCTCCAACTGGAAAACAGacgTCTGACAGACATGACCCTGGTCAGCTCGTTTGTCCACCTGCGTTTCCTGGACGTGTCATCCAACCACCTCTCTGACCTTTCACCCCTGGCTGCCCTCACACAGCTGCTGTGGCTGAAGggcGATGGTAACATGGTGGCCGGGTTCAGAGGTCAGCCCCTGGGTCAGCTGACATACCTACAGTGGCTGAGTCTGGCCCTGAACCGCCTCAAAGACCTGGAAGGCCTAGAAGGCCTCGGCCTAGAGAGCCTCAACCTCATTGGTAACGGTATCCAGAGGGTGTCGGGGCTACGGTACCATCACCTGACCAACCTGGTGACTCTGGAACTGAGAGGAAACAAACTGGAGACCACCGACGGGATATACCTACCCAACCTCCGACGCCTCTACCTGGCCCAGAATACTATCAAGCGCCTGGAGGGTCTGGGTAAGCTGGAGCGTCTGACCACCCTGCACCTCCGAGACAACCAACTGGAGACTCTAGATGGCATCAGTCCCAACATGAAGTCCCTGCAGTACCTCAACATCAGGGGTAACCTGGTGTCTGCCCAGCGTGCCTTGCGTAGTCTGGTGGGCGTATCCAGGACATTGCGAGCGCTGGTCCTAGCGGAAAACCCTCTCGTGGAGACGGAGGACTACCGTCTGTGTGTCCTGAGCCGCCTGCCGTTGCTGGAGCGCCTCGACAAGGAACCCATCTCTCCTGAGGAGAAGTCTGAGGCCCAGGAGAAACTCAGGgagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGTTGGGGCAGAGGAATACTAACTCACCATCACTCAGTGTCTCCTCTCCCAGTCACTCTTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTGACTTCTCTCCCAGTCACTCCTCTCCCAGTCACTCCTCTCCCAGTGACTCCTCTTCCAGTCACCCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACTCCTCTCCCAATGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACCCTTCTCCCAATGACTCCTCTCCCAGTCACCCCTCTCCCAGTGACCCCTCTCCCAGTCACCCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTGACTCCTCTCCCAGTCACTCCTCTCCCAGTCACTCCACCAGTCCACATCGAAGACCTACATAGATCCTTGTGTGTGTGAACAAGTTTGTACTAGCTAGTTAAATGTATTCCTGGTATATTAACCAATGAAGATTGTGTTTATAGACAACTAGAGACGCTCTATtttcaaaacaataaacattTATTGATTGGTAAAAATGTA
>XR_005053408.1
AATCCATAATCATGGTTATATTCAGGGAGATTTGACTTTCTTTACAGAATATTTTTTTCATGCAAAGTTGCAGGAAAGATCTCCCTCTGACTGCTGATCTTGTTTCCATGGAAACGACACCATAAACGCTGTGGCTAACTCACTCAGtgACGTTCACTTGTCCCCAGCCCAAACTGTTAAACGGAGAGCAGGATGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCGGGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCACGGCGCTGTCGGAGGGAGAGGAGGCCGCGAATGAGGATGGACAGGAGGAAAATATGTCAGAAAAAGAGGACCAGATCGAGCCATGCCCTCTGACCAAGGAGATTCTGATCCCCGGTTTGTCTCTTTTGTGTCGTACCGGGAACGGCCTGGCACACGCCTTCGTTAAGCTCCAACTGGAAAACAGacgTCTGACAGACATGACCCTGGTCAGCTCGTTTGTCCACCTGCGTTTCCTGGACGTGTCATCCAACCACCTCTCTGACCTTTCACCCCTGGCTGCCCTCACACAGCTGCTGTGGCTGAAGggcGATGGTAACATGGTGGCCGGGTTCAGAGGTCAGCCCCTGGGTCAGCTGACATACCTACAGTGGCTGAGTCTGGCCCTGAACCGCCTCAAAGACCTGGAAGGCCTAGAAGGCCTCGGCCTAGAGAGCCTCAACCTCATTGGTAACGGTATCCAGAGGGTGTCGGGGCTACGGTACCATCACCTGACCAACCTGGTGACTCTGGAACTGAGAGGAAACAAACTGGAGACCACCGACGGGATATACCTACCCAACCTCCGACGCCTCTACCTGGCCCAGAATACTATCAAGCGCCTGGAGGGTCTGGGTAAGCTGGAGCGTCTGACCACCCTGCACCTCCGAGACAACCAACTGGAGACTCTAGATGGCATCAGTCCCAACATGAAGTCCCTGCAGTACCTCAACATCAGGGGTAACCTGGTGTCTGCCCAGCGTGCCTTGCGTAGTCTGGTGGGCGTATCCAGGACATTGCGAGCGCTGGTCCTAGCGGAAAACCCTCTCGTGGAGACGGAGGACTACCGTCTGTGTGTCCTGAGCCGCCTGCCGTTGCTGGAGCGCCTCGACAAGGAACCCATCTCTCCTGAGGAGAAGTCTGAGGCCCAGGAGAAACTCAGGgagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGttgttccctctgtctgtctctataggagTTTAATGATGAGGTGTCTGTTGGGGCAGAGGAATACTAACTCACCATCACTCAGTGTCTCCTCTCCCAGTCACTCTTCTCCC

Function

symbol description
lrrc23 Acts upstream of or within cilium movement involved in otolith formation. Predicted to be active in cytosol. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural keel. Orthologous to human LRRC23 (leucine rich repeat containing 23).

NR:

description
leucine-rich repeat-containing protein 23

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989109.1 False 1813 mRNA 0.55 9 77238830 77253700
XM_036989106.1 False 2384 mRNA 0.52 9 77238830 77253707
XM_036989107.1 False 2366 mRNA 0.52 9 77238830 77253709
XR_005053408.1 True 1817 mRNA 0.52 10 77239350 77253707

Neighbor

gene id symbol gene type direction distance location
LOC110531297 tkt coding downstream 11057 77210420 ~ 77227773 (-)
zgc:113363 LOC106572953 coding downstream 569695 76656942 ~ 76669135 (-)
mecp2 LOC106572920 coding downstream 921246 76309986 ~ 76317584 (-)
hcfc1b LOC106572922 coding downstream 955653 76210034 ~ 76283177 (-)
cdk20 cdk20 coding downstream 1040864 76179039 ~ 76197966 (-)
LOC110532861 LOC105006798 coding upstream 13652 77267361 ~ 77355158 (-)
LOC110529252 LOC106592002 coding upstream 104319 77358028 ~ 77368083 (-)
LOC110531295 LOC106572974 coding upstream 200763 77454472 ~ 77544388 (-)
LOC110531298 LOC106572998 coding upstream 390367 77644076 ~ 77693050 (-)
ngfa LOC106592688 coding upstream 444391 77698100 ~ 77725335 (-)
G842501 NA non-coding downstream 720 77236300 ~ 77238110 (-)
G842491 NA non-coding downstream 3734 77234402 ~ 77235096 (-)
G842490 NA non-coding downstream 5199 77232924 ~ 77233631 (-)
G842482 NA non-coding downstream 29936 77208570 ~ 77208894 (-)
G842460 NA non-coding downstream 30934 77207355 ~ 77207896 (-)
G842497 NA non-coding upstream 4398 77258107 ~ 77258623 (-)
G842496 NA non-coding upstream 5019 77258728 ~ 77259335 (-)
G842498 NA non-coding upstream 6993 77260702 ~ 77262744 (-)
G842492 NA non-coding upstream 10195 77263904 ~ 77267323 (-)
G842511 NA non-coding upstream 29695 77283404 ~ 77284861 (-)
G842449 NA other downstream 195435 77042589 ~ 77043395 (-)
G842335 NA other downstream 378865 76856457 ~ 76859965 (-)
G842232 aprin other downstream 603194 76625619 ~ 76635636 (-)
G842035 LOC106572932 other downstream 1208898 76023343 ~ 76029932 (-)
G842543 NA other upstream 111310 77365019 ~ 77365360 (-)
G842858 NA other upstream 510392 77764101 ~ 77764737 (-)
G842859 NA other upstream 512602 77766311 ~ 77766840 (-)
G842978 NA other upstream 692439 77946148 ~ 77946428 (-)

Expression


Co-expression Network