LOC110529252 (LOC106592002)


Basic Information

Item Value
gene id LOC110529252
gene name LOC106592002
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77358028 ~ 77368083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611369.2
CTCTATATGCTGCCAGTGCGTGGCAGTCCAAAGTGGGCGGGGATTTCAGCTCGGACCGGAAGAGAAGCGGCGACAACCCGAAACAGAGCTAACAGACGATGGCTGCAATCAGGAAGAAGCTGGTGATAGTGGGAGACGGAGCGTGTGGGAAGACCTGCCTGCTGATCGTCTTCAGTAAAGACCAGTTCCCAGAGGTCTATGTGCCCACTGTGTTCGAGAACTATGTGGCTGACATCGAGGTCGACGGCAAACAGgtGGAGTTAGCGTTATGGGACACAGCAGGACAGGAGGACTATGACAGACTGAGACCTCTCTCCTACCCCGACACTGACGTTATACTCATGTGCTTCTCTGTAGACAGCCCAGATAGTTTAGAGAACATTCCAGAGAAGTGGACTCCAGAGGTGAAACACTTCTGTCCTAATGTTCCCATCATCCTCGTGGGCAACAAGAAGGACCTGAGGAACGACGAACACACACGCAGGGAGCTGGCCAAGATGAAACAGGAGCCAGTGAAGTCGGAGGAGGGCAGAGACATGGCTAACCGGATCGGTGCCTACGGCTGTCAGGAGTGCTCAGCTAAGACCAAGGACGGAGTCAGGGAGGTGTTTGAGATGGCCACCAGGGCGGCGCTACAGGCCAAGAGACGTGGAAAGAAGAACGCCTGCATGCTGTTGTAGGCCCCAGGGAGATGTTGCCCCTGGATACTGATCTTGGACCAGTTTTACCCTCCCAAAATATAGTTGTAATCATTAAAGGGATATTGTCACATTTTGGCAATGACTGAAAGTCTGACAGGGTTCCCCAACCGGTGCCCCGATTTTATTTACCCACTcgcccaagttttctgagcaaaaaataaatacaagtttacgttattttattgttggacataaagaCTGAAAAAACCCCTGCAAATCAGTTCCAAGTGATTTTGATTTTGTAAATCTGTACCAAAGTGTTCTCTCTcataatagagagatatatgTGATTGTATACCAAATCTAAGccaggtttgaaatgattgttttagtcagtgtatatatatttgtttgggcttcttgcggtcaatttgcagtctacaaatgatttataATTATGTTCCTTACCATTGGCTCAAGAAAAAAATCTTTCTGTGGCTGAATCTCTAGGTGATGCTGGCGTTAGCGCCATCAGCTAActgataccatagacttccagtcattacgCTAACACTAGTTTATCAAAGGCTCACAAAACTTCAACTTCCTTTAAACTACACTCAGAGACACATTTGTATCCATGAGtttatctgactctgggtcagtagttAAAGGGCTTAATTGCCAAAATGGTGCACCATCCCTTTTTTCAGGGGTAGGTTTAaaactggtctcagatctgtgcCTGTGGGTAACGCCCCTTTTGAGGGGTAGGCTTAAAATTGGTCTCAGATCTGTGCCTGTGGGTAACGTACCTTTTGAGGGGTAGGCTTAaaactggtctcagatctgtgcCTGTGGGTAACGTACCTTatcggcaccctattccctatatggtgtgctatatagggttccatttgggactggGGAGGTGAGGGGATAGAAAAGGTTAAATGCCCTCGATCTGAAAAAATTGCGTAGGTATCAAAAAGGAAATGAAATCAAACTTTATTCGTCATATCCACAGGATACAGAAGCGATTCTATATGGAACTACTGGGTGAAAGTAGGTCATGTTCATTAGTCACCGAACGGAACAAAACGGACTGAAACCGGGAGGGATCTACCTGAACTTTTACAATAAGAAACGCTTTTCTTTTATTTTTTGTCAATCTTCTACTGCAGTACATTTTGTTACGGTGTTTattaatgaatacaaccctgatgGGCGAGGTGGAAATGTGGCTATGTTTTTACATGTATCCAATCCTGTCGGAACTACACTAATGCCTTAGGGTGAAGGAGCCAAGGGGGCTGGGAAAGATACTGTGGACAGTGTTGTTTTGATGAGGAGCTGTGCCATGAGGCCTAGAGGAGGAATTGAGAAAGTAACGTCGACTGTGGCTTCCTCTCCTGGTCAACCCAGCTGGCCTTAATTTAAAGTTTCTCCTGTCCACTGCCTTTATGTCACGATAGACAGGAAGCTGTTAATTTCACCTGTCCACTACCTTCAGGTAACTATAGACAGGAAGCTGTTAGTTTCATCTGTCCTCTGCCTTCAGGTAACTATAGACAGGAAGCTGTTAGTTTCACCTGTCCACTACCTTCAGGTAACTATAGACAGGAAGCTGTTAGTTTCACCTGTCCTCTGCCTTCAGGTAACGACAGGAAGCTGTTAATTTCACCTGTCCACTACCTTCAGGTAACTATAGACAGGAAGCTGTTAGTTTCACCTGTCCTCTGCCTTCAGGTAACGACAGGAAGCTGTTAATTTTCACCTGTCCACTACCTTCAGGTAACTATAGACAGGAAGCTGTTAATTTCACCTGTCCTCTGCCTTCAGGTAACTATAGACAGGAAGCTGTTAGTTTCACCTGTCCTCTGCCTTCAGGTAACTATAGACAGGAAGCTGCTGTCCTGTCCACTGCCTTCAGGTTACTATATAGAGGAAGCTGCTGTCCTGTCCACTGCCTTCAAGTTACTATATAGAGGAAGCTGCTGTCCTGTCCACTACCTTCATGTTACTATATAGAGGAAGCTGCTGTCCTGTCCACTGCCTTCAGGTTACTATATAGAGGAAGCTGCTGTCCTGTCCACTACCTTCAGGTTACTATATAGAGGAAGCTAAGAGAGAGACTCTTGTTTAACCCTTTAGTTGCGTCCCCTCAGCCCTACTTTATTAAGAATTAAATGTTTATGGGCTTCTTCTGGTCCATGCTCTAACTCAGGCCCTACAGTCCGCaggtgtgtgtgagctgtgtgtaagacaggtgtgtgtgagctgtgtgtgagacaggtgtgtgtgagacgtgtgtgtgtttctcctggCAAGCCGAAGTTCAGTATCCGAGTCTCCGCCCCTTtcgtcagtgattggtcaacagtagggattctccAATAAGTGTTTGTCATTCAACGACAGACTAATCATTTTCATTGAGAAATAAGGCAACAAACATCTTCGTTGGATGTAAAACCGTTCGTCTAGCATCTCCTTGACAAAAACGTACATTTTgggacagatttcttgagttatctttaGATTGTTTCTgattattttgaggaagtgtatattgGCTACGGCGTCTCAAGTTGGACAAACAGTACCATCGCtactttttttcttgtttttcaagagaaggtcttttaagggagcaTGAGAGTACCCTCGTTTGGGTCAGCCGAATCCAAGCATGCGGAAGGAgtaacacaggtgtgtGTGTGTGTTGTGAGCGTGTAACACAGGTGTGTGTTGTGAGCGTGTAAGACAGGTGTTTGTTCGAGCTGTGTGTAagacaggtttgtgtgtgtgcgcgcgtttgTCTATATCCAGTTTCCATGTGTCCAATACATGTATTGTAAGACTGGTTGAGACTGGTTGAGACTGGTTGTTATCGTCAGTAATGTTGAGACTGGTTGTTATCGTCAGTAATGTTGAGACTGGTTGTTATCGTCAGTAATGTTGAGACTGGTTGAGACTGGTTGTTATCGTCAGTAATGTTGAGACTGGTTGAGACTGGTTGTTATCGTCAGTACTGTTGAGACTGGTTGAGACTGGTTGTGTTGTCAGTACTATAAGCATGTTGGGACTGGTTGAGACTGGTAGGGACTGGTTGGGACTGGTAGGGACTGGTTGAGACTGGTAGGGACTGGTTGGGACTGGTTGAGACTGGTTGGGACTGGTTGGGACTGGTTGGGGAGATAATCACCTGCTTCCAACCAAATGGATTTGGAATACTTTAGTCCAGGACATTTTCTGACTTTGACGTGACTTTTGTTTTCTTGGTCCTGTGCAGTTGTTAATCAAACTAATATACGTGTGAACgcacagtttttttttttcaatgtcaACTTATTTTTTTAGAAGAAATTGTGAATTATTTTATGTGTGCCAATATATAAGAACGTAACTGTAGTTCTCGGATCTCTGTGGTCATTAGACCCAACAGCTGTTCAGAATGAAACAAAGATCTACAAACAATTTTATATTTTAGCATTTTAATATACGTAGATGAAGATTTCATTTTCATGTTTtagtctctttttttttttgtgtgtggagggggggtgatgaagagagtgagatgaggagagaggacttTTGAGAGATTGATACTTGATCTACAGAGATGACAGTAGAAGTAATCAATAGTCTACAGTGGGTTTATTTAAAAGCGATTTGATATTTAGAGAGAAtttccccagacacagattaatcctagtcctggactaaaccgCTATTTCAATGGAGATTTTCCATTAAGCAGATTTTTTTAGTACTAAACTAAGCCTAACTttgatctgtgtctgggaaacctgcCATTTTAAAGTTGATTTCCATTTCCTATTTACTCCGTTACTGTTAAtatattatgttattattatCCATGTTCCCTATAAACTGCGTGGGCGCACGGCTCCCCGGGACTTCAGCCCCGCGCAGAGATGTACGAGATTAAACGGTCTAgttttccctgttagttaa

Function

NR:

description
rho-related GTP-binding protein RhoA-C-like

GO: NA

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611369.2 True 4625 mRNA 0.44 6 77358028 77368083

Neighbor

gene id symbol gene type direction distance location
LOC110532861 LOC105006798 coding downstream 2870 77267361 ~ 77355158 (-)
lrrc23 lrrc23 coding downstream 104319 77238830 ~ 77253709 (-)
LOC110531297 tkt coding downstream 130255 77210420 ~ 77227773 (-)
zgc:113363 LOC106572953 coding downstream 688893 76656942 ~ 76669135 (-)
mecp2 LOC106572920 coding downstream 1040444 76309986 ~ 76317584 (-)
LOC110531295 LOC106572974 coding upstream 86389 77454472 ~ 77544388 (-)
LOC110531298 LOC106572998 coding upstream 275993 77644076 ~ 77693050 (-)
ngfa LOC106592688 coding upstream 330017 77698100 ~ 77725335 (-)
zgc:194242 NA coding upstream 479210 77847293 ~ 77854016 (-)
LOC110532870 NA coding upstream 685116 78053199 ~ 78058388 (-)
G842534 NA non-coding downstream 14151 77343012 ~ 77343877 (-)
G842522 NA non-coding downstream 39888 77316552 ~ 77318140 (-)
G842499 LOC106604981 non-coding downstream 57755 77298966 ~ 77300273 (-)
G842511 NA non-coding downstream 73167 77283404 ~ 77284861 (-)
G842492 NA non-coding downstream 90705 77263904 ~ 77267323 (-)
G842550 NA non-coding upstream 64944 77433027 ~ 77433260 (-)
G842551 NA non-coding upstream 72307 77440390 ~ 77440626 (-)
G842552 NA non-coding upstream 76870 77444953 ~ 77445180 (-)
G842554 NA non-coding upstream 79216 77447299 ~ 77447604 (-)
G842557 NA non-coding upstream 79702 77447785 ~ 77448438 (-)
G842449 NA other downstream 314633 77042589 ~ 77043395 (-)
G842335 NA other downstream 498063 76856457 ~ 76859965 (-)
G842232 aprin other downstream 722392 76625619 ~ 76635636 (-)
G842858 NA other upstream 396018 77764101 ~ 77764737 (-)
G842859 NA other upstream 398228 77766311 ~ 77766840 (-)
G842978 NA other upstream 578065 77946148 ~ 77946428 (-)
G843107 NA other upstream 713065 78081148 ~ 78081551 (-)
G843375 NA other upstream 1074143 78442226 ~ 78442622 (-)

Expression


Co-expression Network