LOC110531295 (LOC106572974)


Basic Information

Item Value
gene id LOC110531295
gene name LOC106572974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77454472 ~ 77544388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986981.1
gacagaaagagggagagagagagaggcagacagagggagagagagtgagagaaaaggggGCTGTTAGAGTGCACGCTgaaacacaccaatcagagaaacagacagcatcAGTCGTGTCTGGGCTCGCGCTGCACTGTTGGTTCTTTACCAAGTGGTGAGATCAGATGATAccgaaaatatatatatatttttaaataactgAACCGAAACACCGAACAGGCTACGTCTGAGGTTTGTGTTGCGGGTAAAGTTTGGATTTTAGACAGCTTGCGCTGAGTGAAGCTCCTCCCGTCTCTCCCTTCACCGTAAACACAGCAGGTGGATGCCGCCATGCCATTTGGGTGCCTTGCCGTGCGAGATGGGCGGAACTTGGACAACATCTATGATGTCACCGATAAGTATGAGATGGGACAGGTCCTTAAAGCgaaGGAGTTCTGTGAGCTGTGTATggctaaagacagacagaccaacaagGTGTTTGTCTGTAAGAAGTTTCTGAAGAAGGACGGGAGGAAAGTACGCAAGGCTGCCAAGAATGAAatccagatcctcaaaatGGTCAACCATCCAAACATCCTCCAACTGATCGACACTTTTGAGACGCGGAAGGAGTTCTTCATCATCCAGGAGCTGGCTACAGGCGGTGATGTGTTTGACTGGATTCTGGACCAGGGGAATTATACAGAGAGAGATGCCTCCAACGTGATCAAACAGGTTCTAGAGGCCGTATCCTATCTACACTCACTCAACATCGTACACAGGAACCTCAAGTTGGAGAACCTGATGTACTACGCAGAGAACAATCACAACAAAGTGGTTCTGCGGGATTTCTACCTGTCCAAGTTTGAGAACGGTTCCATCACAGAACCCTGTGGAACACCGGAGTACCTGGctcccGAGGTTGTGGCCAGACACCGGTACGGTCGACCGGTGGACTGTTGGGCAGTAGGGGTCATCATGTATATACTGTGA

Function

NR:

description
PREDICTED: caM kinase-like vesicle-associated protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986981.1 True 972 mRNA 0.49 7 77454472 77544388

Neighbor

gene id symbol gene type direction distance location
LOC110529252 LOC106592002 coding downstream 86389 77358028 ~ 77368083 (-)
LOC110532861 LOC105006798 coding downstream 99314 77267361 ~ 77355158 (-)
lrrc23 lrrc23 coding downstream 200763 77238830 ~ 77253709 (-)
LOC110531297 tkt coding downstream 226699 77210420 ~ 77227773 (-)
zgc:113363 LOC106572953 coding downstream 785337 76656942 ~ 76669135 (-)
LOC110531298 LOC106572998 coding upstream 99688 77644076 ~ 77693050 (-)
ngfa LOC106592688 coding upstream 153712 77698100 ~ 77725335 (-)
zgc:194242 NA coding upstream 302905 77847293 ~ 77854016 (-)
LOC110532870 NA coding upstream 508811 78053199 ~ 78058388 (-)
etv7 LOC106572981 coding upstream 536008 78080396 ~ 78105379 (-)
G842561 NA non-coding downstream 3092 77451173 ~ 77451380 (-)
G842557 NA non-coding downstream 6034 77447785 ~ 77448438 (-)
G842554 NA non-coding downstream 6868 77447299 ~ 77447604 (-)
G842552 NA non-coding downstream 9292 77444953 ~ 77445180 (-)
G842551 NA non-coding downstream 13846 77440390 ~ 77440626 (-)
G842655 NA non-coding upstream 1391 77545779 ~ 77546148 (-)
G842660 NA non-coding upstream 10119 77554507 ~ 77554832 (-)
G842672 NA non-coding upstream 26076 77570464 ~ 77571131 (-)
G842675 NA non-coding upstream 28349 77572737 ~ 77573642 (-)
G842796 NA non-coding upstream 39275 77583663 ~ 77583907 (-)
G842543 NA other downstream 89112 77365019 ~ 77365360 (-)
G842449 NA other downstream 411077 77042589 ~ 77043395 (-)
G842335 NA other downstream 594507 76856457 ~ 76859965 (-)
G842858 NA other upstream 219713 77764101 ~ 77764737 (-)
G842859 NA other upstream 221923 77766311 ~ 77766840 (-)
G842978 NA other upstream 401760 77946148 ~ 77946428 (-)
G843107 NA other upstream 536760 78081148 ~ 78081551 (-)
G843375 NA other upstream 897838 78442226 ~ 78442622 (-)

Expression


Co-expression Network