LOC110531298 (LOC106572998)


Basic Information

Item Value
gene id LOC110531298
gene name LOC106572998
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77644076 ~ 77693050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989111.1
CCAAGGGAGggcagtttggatttggcttcagaccaaaTTACTTCCTTTGCAAAACATACATTTCAGAAAAACgtgtctgtttctggtctgtttgtgtttgatgtcctgcagtagctagcttgctaactcagtcctttcctaagccatggatggagatggggatttggacttgATTCTCTGTTCAGttGATGGGCTCGTTGGTCCTTGCGGTTGGGCTGTGGTTGCGGTTCGATCCTGAGACCGTCGCTCTGCTGAACGGAGACGGAGCGCCAGACACCTTCTTTTATGGTGTGTATATCCTGATCATAGCGGGCAGTCTAGTGATGTTGGTGGGATTCTTTGGCTGCTGTGGAGCCATACGAGAGTCCCAGTGTCTGCTGGGGTCGTTCTTTGCCTGCCTGCTGATAATCTTTGGCGCAGAGGTTGCTGCTGGTGTGTTTGGCTTCTTGAACAAAGACAAGATAATTGAAGATGTCCAGAACTATTACATCAAATCCTACAacgacaacaaaaacaacaacacgatGATACAAAACTCTTACCACAAAGTTCTCAACTGTTGTGGGACGTCCCAGAGCTTCTGCCCTGAGGCCCCAGCTGACACCAAGGACTGTGAGGTGGGCATCAAGGAGTTCTTCAACAGTAAACTCTACATCATCGGTTACGTGGGGATCGGCATCGCTGGAGTCATGgtTATAGGGATGATCTTCAGTATGGTGTTGTGCTGTGCCATCCGCAACAGCAGGGAGATCATGTAACCAGGCAGAGCTTCCActcctccagtccccccacaacagcccaactccagtccccccacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaaca
>XM_036989110.1
aaaccacatttgttcaagcaagtcagccatgtcagccgtttttttttaaggcagtaaatgaggttgAATCAGTTGTTTCCTTGATAGCCAAAAAAGCGCTGCTGTTGGGACAGCGTTATGTATGCCGTAACAGTTTGTGTGCACCGTTTTTCACGTTATCGTGCAATTCATGTTGTGCtatggctttgctggcatggatttttttttttatggtttaCCCCACCAAggtttacatgctaaaatcgccactgattcAGCTCTGTCTGAAGCAAAAAATAAGAGACGGCCTAACCACCATCAGACCAAATCATGCAGGAGAGGACACGGCCAGCCAGCTTCATATCCAATCAGAATCAACCATGCAGTCACTGGACTGGAATCAGCGAGTCCGCATGTctgctgtccctgtctgtctgtgtcgagTTGGAAACCGCCGGTCTGGaacccccctccactccccctcacATTGAAATGGGCGGTCTGGAAACACAGTGAGAGGAACCTCAGGTGCTTTACTCTGCTGACGATATTGACAGCAGCACGGTGCACCGAtatattgtttacattttttttaaagagaaagAATAGCGACAAACTCCGATTTACGTTTTGTGAATTAGCGTTGCATTTTTGGAGCCAACAATGGGGAAAGTGGAAGGAGGAATGAAATGTGTCAAATATCTACTTTTCATCTTCAACTTCATATTTTGGttGATGGGCTCGTTGGTCCTTGCGGTTGGGCTGTGGTTGCGGTTCGATCCTGAGACCGTCGCTCTGCTGAACGGAGACGGAGCGCCAGACACCTTCTTTTATGGTGTGTATATCCTGATCATAGCGGGCAGTCTAGTGATGTTGGTGGGATTCTTTGGCTGCTGTGGAGCCATACGAGAGTCCCAGTGTCTGCTGGGGTCGTTCTTTGCCTGCCTGCTGATAATCTTTGGCGCAGAGGTTGCTGCTGGTGTGTTTGGCTTCTTGAACAAAGACAAGATAATTGAAGATGTCCAGAACTATTACATCAAATCCTACAacgacaacaaaaacaacaacacgatGATACAAAACTCTTACCACAAAGTTCTCAACTGTTGTGGGACGTCCCAGAGCTTCTGCCCTGAGGCCCCAGCTGACACCAAGGACTGTGAGGTGGGCATCAAGGAGTTCTTCAACAGTAAACTCTACATCATCGGTTACGTGGGGATCGGCATCGCTGGAGTCATGgtTATAGGGATGATCTTCAGTATGGTGTTGTGCTGTGCCATCCGCAACAGCAGGGAGATCATGTAACCAGGCAGAGCTTCCActcctccagtccccccacaacagcccaactccagtccccccacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaaca
>XM_036989113.1
ACCTcgattgtcagtagaaaccacatttgttcaagcaagtcagccatgtcagccgtttttttttaaggcagtaaatgaggttgAATCAGTTGTTTCCTTGATAGCCAAAAAAGCGCTGCTGTTGGGACAGCGTTATGTATGCCGTAACAGTTTGTGTGCACCGTTTTTCACGTTATCGTGCAATTCATGTTGTGCtatggctttgctggcatggatttttttttttatggtttaCCCCACCAAggtttacatgctaaaatcgccactgattcAGCTCTGTCTGAAGCAAAAAATAAGAGACGGCCTAACCACCATCAGACCAAATCATGCAGGAGAGGACACGGCCAGCCAGCTTCATATCCAATCAGAATCAACCATGCAGTCACTGGACTGGAATCAGCGAGTCCGCATGTctgctgtccctgtctgtctgtgtcgagTTGGAAACCGCCGGTCTGGaacccccctccactccccctcacATTGAAATGGGCGGTCTGGAAACACAGTGAGAGGAACCTCAGGTGCTTTACTCTGCTGACGATATTGACAGCAGCACGGTGCACCGAtatattgtttacattttttttaaagagaaagAATAGCGACAAACTCCGATTTACGTTTTGTGAATTAGCGTTGCATTTTTGGAGCCAACAATGGGGAAAGTGGAAGGAGGAATGAAATGTGTCAAATATCTACTTTTCATCTTCAACTTCATATTTTGGttGATGGGCTCGTTGGTCCTTGCGGTTGGGCTGTGGTTGCGGTTCGATCCTGAGACCGTCGCTCTGCTGAACGGAGACGGAGCGCCAGACACCTTCTTTTATGGTGTGTATATCCTGATCATAGCGGGCAGTCTAGTGATGTTGGTGGGATTCTTTGGCTGCTGTGGAGCCATACGAGAGTCCCAGTGTCTGCTGGGGTCGATAATTGAAGATGTCCAGAACTATTACATCAAATCCTACAacgacaacaaaaacaacaacacgatGATACAAAACTCTTACCACAAAGTTCTCAACTGTTGTGGGACGTCCCAGAGCTTCTGCCCTGAGGCCCCAGCTGACACCAAGGACTGTGAGGTGGGCATCAAGGAGTTCTTCAACAGTAAACTCTACATCATCGGTTACGTGGGGATCGGCATCGCTGGAGTCATGgtTATAGGGATGATCTTCAGTATGGTGTTGTGCTGTGCCATCCGCAACAGCAGGGAGATCATGTAACCAGGCAGAGCTTCCActcctccagtccccccacaacagcccaactccagtccccccacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaaca
>XM_036989112.1
GAGAATCAAGAAGGGGACCAAGTGCTACGACATCTGGGCCAATGACTTGGTTTGGAAGAAGGTCGAAAGGAAGGCGAGACCTGGGAAACCTCGCTGCTCTTTCGCTCCTAGCTGGGGTCACCATCTGTTAAGttGATGGGCTCGTTGGTCCTTGCGGTTGGGCTGTGGTTGCGGTTCGATCCTGAGACCGTCGCTCTGCTGAACGGAGACGGAGCGCCAGACACCTTCTTTTATGGTGTGTATATCCTGATCATAGCGGGCAGTCTAGTGATGTTGGTGGGATTCTTTGGCTGCTGTGGAGCCATACGAGAGTCCCAGTGTCTGCTGGGGTCGTTCTTTGCCTGCCTGCTGATAATCTTTGGCGCAGAGGTTGCTGCTGGTGTGTTTGGCTTCTTGAACAAAGACAAGATAATTGAAGATGTCCAGAACTATTACATCAAATCCTACAacgacaacaaaaacaacaacacgatGATACAAAACTCTTACCACAAAGTTCTCAACTGTTGTGGGACGTCCCAGAGCTTCTGCCCTGAGGCCCCAGCTGACACCAAGGACTGTGAGGTGGGCATCAAGGAGTTCTTCAACAGTAAACTCTACATCATCGGTTACGTGGGGATCGGCATCGCTGGAGTCATGgtTATAGGGATGATCTTCAGTATGGTGTTGTGCTGTGCCATCCGCAACAGCAGGGAGATCATGTAACCAGGCAGAGCTTCCActcctccagtccccccacaacagcccaactccagtccccccacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaacagcccaactccagtcccctcacaaca

Function

NR:

description
PREDICTED: CD9 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989111.1 False 896 mRNA 0.51 8 77644076 77684318
XM_036989110.1 False 1422 mRNA 0.48 8 77644076 77686330
XM_036989113.1 False 1364 mRNA 0.48 7 77644076 77686347
XM_036989112.1 True 843 mRNA 0.52 8 77644076 77693050

Neighbor

gene id symbol gene type direction distance location
LOC110531295 LOC106572974 coding downstream 99688 77454472 ~ 77544388 (-)
LOC110529252 LOC106592002 coding downstream 275993 77358028 ~ 77368083 (-)
LOC110532861 LOC105006798 coding downstream 288918 77267361 ~ 77355158 (-)
lrrc23 lrrc23 coding downstream 390367 77238830 ~ 77253709 (-)
LOC110531297 tkt coding downstream 416303 77210420 ~ 77227773 (-)
ngfa LOC106592688 coding upstream 5050 77698100 ~ 77725335 (-)
zgc:194242 NA coding upstream 154243 77847293 ~ 77854016 (-)
LOC110532870 NA coding upstream 360149 78053199 ~ 78058388 (-)
etv7 LOC106572981 coding upstream 387346 78080396 ~ 78105379 (-)
LOC110531300 lgr6 coding upstream 431625 78124675 ~ 78227314 (-)
G842803 NA non-coding downstream 25648 77617919 ~ 77618428 (-)
G842799 NA non-coding downstream 43700 77600137 ~ 77600376 (-)
G842796 NA non-coding downstream 60169 77583663 ~ 77583907 (-)
G842675 NA non-coding downstream 70434 77572737 ~ 77573642 (-)
G842672 NA non-coding downstream 72945 77570464 ~ 77571131 (-)
G842834 NA non-coding upstream 22199 77715249 ~ 77717305 (-)
G842835 NA non-coding upstream 24527 77717577 ~ 77718287 (-)
G842841 NA non-coding upstream 42492 77735542 ~ 77735743 (-)
G842842 NA non-coding upstream 43791 77736841 ~ 77737047 (-)
G842543 NA other downstream 278716 77365019 ~ 77365360 (-)
G842449 NA other downstream 600681 77042589 ~ 77043395 (-)
G842335 NA other downstream 784111 76856457 ~ 76859965 (-)
zgc:113363 LOC106572953 other downstream 981017 76656942 ~ 76669135 (-)
G842858 NA other upstream 71051 77764101 ~ 77764737 (-)
G842859 NA other upstream 73261 77766311 ~ 77766840 (-)
G842978 NA other upstream 253098 77946148 ~ 77946428 (-)
G843107 NA other upstream 388098 78081148 ~ 78081551 (-)
G843375 NA other upstream 749176 78442226 ~ 78442622 (-)

Expression


Co-expression Network