ngfa (LOC106592688)


Basic Information

Item Value
gene id ngfa
gene name LOC106592688
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 77698100 ~ 77725335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989114.1
caacacacacagtgGATGGATCAGGAGCTGCGTCTAAGGCTTTAAAAGAGGATGCCAGATTGGGAGTTTGGGATAATTCTGAcagggagcagagcagagcaataGGTGGACTATATTTCCCCCTTTCACTGGGATCTGTCTCTcactggggggaggagagaggaagagagggacagacggaAAGCATAGACGGAGgacgtgTGCCCATGAGGTCGTTGCTGTTGGTGCTTCTGCTGATTGGCGTCCAGGCTGTACTGAACATGGGAGGTGTCCTGGGCCCGGTGGCAGCCAACCACAGCGCAGAACACCACACAGTAGCCAATGGCAGAGCAAAACAGCAGCGGGCGGCCCGACTCTCAGTGTCACCTCAGCAGGAGCAGCAGACTCAGCAGAGACCCAGCCGGACCAGACAGGCCCACAGGCCAGCCTCTCTACCCCAGGGCTGGATCTCTTCCCTGGGCCACTCTGAGACAggctccccctctacctcctccatccCAGAGGTGGACACCAAACTGTTCAGCAAGCGGCTCTACCACTCCTCACCGCGCGTCGTCTTCAGTGACGTACCCCCCTCTCACCACGGCCTGGGGGGGGAGacgggggaagaggagggagaggaggaagtggggAGGGTGATGGGTGGGGGAGTGAGGGTGAGGCGGAAGGCAGGGGGGCAGCCCATGCACAGGGGGGAGTACTCCGTGTGCGACAGCATCAGCGTGTGGTTGGGGAACCTGACCAAGGCCACAGACATCGCCGGCAACGAGGTGGAGGTTCTGCCAGAGGTGAAGATAGACAACGTCCGCAAGAGACAGTTCTTCTACGAGACCACCTGCCGTGTGGCCACACCCCCGGGGGGCGGAGCTGGGGTTGGGGGAGGAGTTATGGGAGGCGGGCCCAAGGCGGGGGCCAAATCAGGGTGCCGCGGCATCGACAGCCGTCACTGGAACTCGTACTGCACCAACACGCACACGTACGTGCTCGCGCTCACCAAGTCCAAGGAGCAGATGGCGTGGAGGCTGATACGCATCAacgcagcgtgtgtgtgtgtcctcagccGCAAGTCCTGGAGGCACTGACCTTTAACCCCTGGGACTATGGACCCTGAACCACACACCATCATCACTGACCTTTAACCCCTGGGAATATGGACCATGAACCCCGAaccacacacaggacacacaccaTCAATACTGACCTTTAACCCCTGGGAATATGGACCATGAACCCTGAACCACACACCATCATCACTGACCTTTAACCCCTGGGACTATGGACCCTGaaccacacacagtacacacatcaTCATCGGCCGTCACTAGGGGTCGAGTATGATTGCCCTCCTGgtgggtctcacacacacactcttgaatCACCCCCCCCCCTACCTCAGTCAGTGTCCTGGTTCTTCTAAGTTATGAGGACTGTAAGTCATATTTATATTTTAAACAGTCtattatgaatatatatatatatatatatatattatataagtgtgtatatatacacgcATCATGAAATCAAGCTTtcattgttgtgttgttgttgttgttgttgttatttattA
>TU959521
ATCGACAGCCGTCACTGGAACTCGTACTGCACCAACACGCACACGTACGTGCTCGCGCTCACCAAGTCCAAGGAGCAGATGGCGTGGAGGCTGATACGCATCAacgcagcgtgtgtgtgtgtcctcagccGCAAGTCCTGGAGGCACTGACCTTTAACCCCTGGGACTATGGACCCTGAACCACACACCATCATCACTGACCTTTAACCCCTGGGAATATGGACCATGAACCCCGAaccacacacaggacacacaccaTCAATACTGACCTTTAACCCCTGGGAATATGGACCATGAACCCTGAACCACACACCATCATCACTGACCTTTAACCCCTGGGACTATGGACCCTGaaccacacacagtacacacatcaTCATCGGCCGTCACTAGGGGTCGAGTATGATTGCCCTCCTGgtgggtctcacacacacactcttgaatCACCCCCC

Function

NR:

description
neurotrophin-6, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989114.1 False 1570 mRNA 0.56 2 77698100 77725335
TU959521 True 452 lncRNA 0.55 1 77698286 77698737

Neighbor

gene id symbol gene type direction distance location
LOC110531298 LOC106572998 coding downstream 5050 77644076 ~ 77693050 (-)
LOC110531295 LOC106572974 coding downstream 153712 77454472 ~ 77544388 (-)
LOC110529252 LOC106592002 coding downstream 330017 77358028 ~ 77368083 (-)
LOC110532861 LOC105006798 coding downstream 342942 77267361 ~ 77355158 (-)
lrrc23 lrrc23 coding downstream 444391 77238830 ~ 77253709 (-)
zgc:194242 NA coding upstream 121958 77847293 ~ 77854016 (-)
LOC110532870 NA coding upstream 327864 78053199 ~ 78058388 (-)
etv7 LOC106572981 coding upstream 355061 78080396 ~ 78105379 (-)
LOC110531300 lgr6 coding upstream 399340 78124675 ~ 78227314 (-)
LOC110531296 NA coding upstream 530614 78255949 ~ 78263583 (-)
G842825 NA non-coding downstream 9987 77687874 ~ 77688113 (-)
G842788 NA non-coding downstream 26119 77638787 ~ 77671981 (-)
G842795 NA non-coding downstream 53566 77638523 ~ 77644534 (-)
G842803 NA non-coding downstream 79672 77617919 ~ 77618428 (-)
G842799 NA non-coding downstream 97724 77600137 ~ 77600376 (-)
G842841 NA non-coding upstream 10207 77735542 ~ 77735743 (-)
G842842 NA non-coding upstream 11506 77736841 ~ 77737047 (-)
G842847 NA non-coding upstream 18694 77744029 ~ 77744896 (-)
G842848 NA non-coding upstream 20725 77746060 ~ 77746263 (-)
G842849 NA non-coding upstream 22540 77747875 ~ 77748096 (-)
G842543 NA other downstream 332740 77365019 ~ 77365360 (-)
G842449 NA other downstream 654705 77042589 ~ 77043395 (-)
G842335 NA other downstream 838135 76856457 ~ 76859965 (-)
zgc:113363 LOC106572953 other downstream 1035041 76656942 ~ 76669135 (-)
G842858 NA other upstream 38766 77764101 ~ 77764737 (-)
G842859 NA other upstream 40976 77766311 ~ 77766840 (-)
G842978 NA other upstream 220813 77946148 ~ 77946428 (-)
G843107 NA other upstream 355813 78081148 ~ 78081551 (-)
G843375 NA other upstream 716891 78442226 ~ 78442622 (-)
G842834 NA non-coding upstream 16512 77715249 ~ 77717305 (-)
G842835 NA non-coding upstream 18840 77717577 ~ 77718287 (-)

Expression


Co-expression Network