XLOC_026788 (si:dkey-210j14.3)


Basic Information

Item Value
gene id XLOC_026788
gene name si:dkey-210j14.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52641737 ~ 52644737 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052117
ATCCTGTTCTGCAAATTGCTAGATATGCTATGATTCTGTTCTCAGAAATACACTGAATACAGTGCTGTTGTTTGTTGAGAATACAAAGGCAGCTCTGCACTTATAGATTACTCGTTAGCAGTGCGGGGGACGGATGTTTACAATATACATCACTGATTAATGGTCCCGTAAACAATGAACGTCATGAATACAGCTGATTTTCAGACGCAGTTAACATCCATACTGGAAATGTTAGCGAAAAGCGCCGTTGTTGAAATAAGCAAACTATTCGAGGAGAATTCATTGTTGCTGCGGTTGGAGATTTCACGATGTACAAACGAAAATGAATCTCTGAAAAAGAAATGCCATTTTCTGGAGAGCGAACTTCAGTCTGCTCGAAAAACCGCTGCAAAGATGAACGGGACAGAAGCTCCGTTCAGCCGCACGGGACTTACAGGGTCTGCCCGACGCCCTTCCATCGACAATGCGTTCAGTAAGGAATGGTGCATGAACCTCTGGAGACACGAGGAGTCAAATGCTGGAGAGCAGGAGGAATCACATCAGGACTCTTCGGGCATGGCTGAAGATCCAGTAAGTTTGCTGGATGATGAAGAGGATGAGGAGCCAGATATGATCATGATCAAGGAGGAGACGTTTGACGATTGCTCTGGAAAGAATAAACCTGATGAAGACGAAATGAGCAGTTTGGCAGGACCAGCAATGCCCAGTGATGGGAGATCACAGAACTGTGAAGATTACATAACATACACTGTGCCTTCAGATGAACAAGCCCGACCGAACGTACAGCAGCCACAACCAGAAGAGGAAAGTCTTCACGGGACGATTTCTACACATGGACACAACACAGCAGAGCAAAATTTCCCCAGCACACACAACCCCACGAGTTTTTCAGAAGAGAAAaggtttgagtgtgtgttttgtcaaAGAACTTTCAACAAACTAACCTACCTAAAAGCACACATGCGAACACACTCTGGAGAAAAGCCTTTTGTCTGTACTGTGTGTGGTAAAAGATTTGCGCAAAAAACGTACCTCCGAATACACCAGCGCACTCACTCCGGTGAAAGGCCGTACTCGTGCATGGAGTGCGGAAAGAGTTTTGCCCAAAAAAGCTCTCTAAACGTGCATCTCCGAagccacactggagaaaagccgtaCAGCTGCTCAGAGTGCGGTAAAAGCTACGCGTACAAACAGGGTTTCAATACACACCAGTGCTTTAGTTAGATTGGTACATACTgcagtaggg

Function

symbol description
si:dkey-210j14.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-88 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000089883

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052117 True 1249 mRNA 0.46 4 52641737 52644737

Neighbor

gene id symbol gene type direction distance location
XLOC_026787 trim35-13 coding downstream 26990 52607039 ~ 52614747 (-)
XLOC_026786 BX897682.1 coding downstream 424486 52215045 ~ 52217251 (-)
XLOC_026785 NA coding downstream 444913 52194623 ~ 52196824 (-)
XLOC_026784 BX908776.1 coding downstream 551733 52064001 ~ 52090004 (-)
XLOC_026782 aatka coding downstream 729718 51899578 ~ 51912019 (-)
XLOC_026789 zgc:113210 coding upstream 2407 52647144 ~ 52661242 (-)
XLOC_026790 si:dkey-210j14.4 coding upstream 22962 52667699 ~ 52674118 (-)
XLOC_026791 si:dkey-210j14.5 coding upstream 31840 52676577 ~ 52683241 (-)
XLOC_026792 CT573476.1 coding upstream 247934 52892671 ~ 52899394 (-)
XLOC_026793 NA coding upstream 430110 53074847 ~ 53076911 (-)
XLOC_026783 dre-mir-338-3 non-coding downstream 734175 51907486 ~ 51907562 (-)
XLOC_026781 NA non-coding downstream 743954 51892719 ~ 51897783 (-)
XLOC_026796 NA non-coding upstream 585973 53230710 ~ 53232495 (-)
XLOC_026797 NA non-coding upstream 804379 53449116 ~ 53452782 (-)
XLOC_026802 NA non-coding upstream 928394 53573131 ~ 53589177 (-)
XLOC_026804 BX004869.1 non-coding upstream 1044573 53689310 ~ 53689428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01530888_01533572 NA coding CI01000113 null 1530791 ~ 1533572 (+)