XLOC_002679 (slc5a1)


Basic Information

Item Value
gene id XLOC_002679
gene name slc5a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17135631 ~ 17159761 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004979
TAAGTGAGCACACACTCGCACATGCATGCACAGTGTCTTGAGCATCGAGGGACGCACTTGCCCTCCTCAAACACCGTCAGAATGGGTGCAGATTATTTTGGATTTTCACTGCTCCGCAATGATGTCAAAAGAAACACCACCATATATGTGAACAacccagctgacatttctgtgatTGTCATTTATTTTCTGGTGGTTCTGGCGGTGGGAGTATGGGCCATGGTACGGACCAATCGAGCCACGGTCGGTGGCTTTTTCCTGGCCGGCAGAAGTATGGTGTGGTGGCCGATTGGAGCCTCTCTCTTCGCAAGTAACATCGGAAGTGGTCATTTTGTGGGAATTGCAGGAACTGGAGCTGCTGCTGGAATCGCCATCGGAGGATTTGAGTGGAACGCTCTGGTTGTTGTGATTATTCTGGGATGGCTCTTTGTGCCCATCTACATAAAGGCTGGGGTTGTGACTATGCCAGAGTACCTAAAGAAGAGGTTTGGTGGTCAGCGAATCCGCATCTACCTCTCTGTGCTGTCACTGTGCCTCTACGTTTTCACCAAAATTTCGGCGGACATGTTTGCAGGAGCCATTTTCATCAACCAGGCTCTAGGACTGAACATTTACCTGGCTGTGGTAATTCTGCTGCTGATTACAGCTCTTTACACAGTAACAGGTGGTTTAGCTGCTGTCATCTACACAGACACACTGCAGACCATCATCATGGTGGTGGGATCGTTCATCCTCATGGGCTTTGCATTTAATAAGGTTGGAGGCTATGAGAACTTTAGGGACAGCTATATGACTGCCATCCCGTCAGTAATCGGTACAAACATCAGTGAATCTTGCTACACCCCTCGTGCAGACTCATTCCACATTTTCAGAGATCCCATTAATGGAGATCTGCCCTGGCCAGGACTCCTCTTTGGTCTTACAATCCAGGCCGGCTGGTACTGGTGCACGGACCAGGTGATTGTTCAGCGTTGTCTGTCTGCGAAGAACCTCTCTCATGTGAAGGCTggctgtattttgtgtggttaCCTCAAGCTGCTGCCCATGTTCCTCATGGTCTTCCCTGGCATGATCAGCAGAGTGCTGTACCCAGATGAAATTGCCTGTGTGGATCCGGATGAGTGTAAAGCTGTCTGTGGAGCCGAAGTGGGCTGCACTAACATCGCTTATCCCAAACTTGTGGTGGACCTGATGCCAAATGgtCTCCGAGGGCTGATGTTGTCCGTCATGTTGGCTTCACTCATGAGTTCACTCACCTCCATCTTCAACAGCGCCAGCACACTCTTCACCATGGACATTTACACCAAGATCAGGCCCAAAGCCAAGGAAAAGGAGCTGATGATTGCCGGCAGgttgtTTATGCTGCTGTTGATCGGCATCAGTATCGCATGGATCCCCATCGTTCAGACAGCTCAGAGTGGTCAGCTCTTCGACTACATTCAGTCCATCACCAGTTATCTGGCTCCACCAATCGCTGCTGTCTTTGCACTTGCTATTTTCTGCAAGCGAGTCAATGAACCTGGTGCTTTCTATGGGTTGTGTGTTGGTCTGCTGGTGGGTCTGGCGCGTATGATAACAGAGTTTGCCTACGGCACAGGCAGCTGCGTGAATCCCAGTAACTGTCCCACGATCATCTGCGGTGTCCACTACCTCTACTTCGCCCTCATCCTCTTCGGCCTGTCCTGCATATTGATCCTGTCCATCTCACTTATGACCAAACCAATTGAAGACAAACATCTCTACAGGCTGTGCTGGAGTTTGAGGAACAACACAGAGGAGAGGATTGACCTGGAGGCAGACGACTGGACTGAGGACCAGGACTCCAACTCTATGGAAACAGATGAGATGCGTGAGGAGCCAGGCTGTTGTAAGAAGGCCTACAACTGGTTCTGCGGCTTCGATCAAGGCAATGCTCCCAAACTGACTAAAGAACAGGAGGCTGAGCTGAAGATGAAGCTCACCGACACCACTGAGAAACCTCTATGGAGAAATGTGGTCAACGCTAACGCCGTTATCCTCCTCACCGTCTGCGTCTTTTTCCACGGTTTCTTCGGTTAAACATCACTGGACAGAAATGTTACTTTGTCAGTAACATCAAGCGAAATTGTGATTCATCTGATTGTAAGAGGCTACAAAGTTCATCTTGAAGAACTCAGTACTTCCTTTTCCTCAACAGAAACTCTTCCCTTCCGTATAGattaattaatatatacagttttgGCTCCTTTCTCTCTGTTTTCATTTGTAAGCCTGGACCAGAACTGATACATataatcatgttttgttttttgtttttttgttgttttttacaggAGCTGATAATTTAACATGTTCTTGATGGTTTTactgtaaattcagtattgtttACAGTCCAAAGCTGCACATTCTTTTTCATTTTACACAGCAATAGTTTCAACTTACATTATGAAGTTCTGGTCTTCTAATGTATTATGATCAATTCAATGCAAAGCTTTTTCAACTGTCTCACATCTACTAAATTACTGTTAGATAAGTTGgagcttaaatatatatatatttgtttaagacaagggtattttatttaataatattcatatttttggCATGTTATATACGTGCTCTCTGTAATATATTAATGTGGCTGTCTTTATTGTAATAAAGAgaaattaattgtca
>TCONS_00004980
TTTATTTCcttcgttgaacacaaaagaaactaTTCTGAattcgaagaatgttggaagccaGTAGCTATATGAATactaatactatggaaatcaataactgccggttttcaacatttttctaaatatcttattttgcggTCAACGGAAAGAAGAAACTCAAAGGCTTGGAACAATTTGAGCATTGGAGCCTCTCTCTTCGCAAGTAACATCGGAAGTGGTCATTTTGTGGGAATTGCAGGAACTGGAGCTGCTGCTGGAATCGCCATCGGAGGATTTGAGTGGAACGCTCTGGTTGTTGTGATTATTCTGGGATGGCTCTTTGTGCCCATCTACATAAAGGCTGGGGTTGTGACTATGCCAGAGTACCTAAAGAAGAGGTTTGGTGGTCAGCGAATCCGCATCTACCTCTCTGTGCTGTCACTGTGCCTCTACGTTTTCACCAAAATTTCGGCGGACATGTTTGCAGGAGCCATTTTCATCAACCAGGCTCTAGGACTGAACATTTACCTGGCTGTGGTAATTCTGCTGCTGATTACAGCTCTTTACACAGTAACAGGTGGTTTAGCTGCTGTCATCTACACAGACACACTGCAGACCATCATCATGGTGGTGGGATCGTTCATCCTCATGGGCTTTGCATTTAATAAGGTTGGAGGCTATGAGAACTTTAGGGACAGCTATATGACTGCCATCCCGTCAGTAATCGGTACAAACATCAGTGAATCTTGCTACACCCCTCGTGCAGACTCATTCCACATTTTCAGAGATCCCATTAATGGAGATCTGCCCTGGCCAGGACTCCTCTTTGGTCTTACAATCCAGGCCGGCTGGTACTGGTGCACGGACCAGGTGATTGTTCAGCGTTGTCTGTCTGCGAAGAACCTCTCTCATGTGAAGGCTggctgtattttgtgtggttaCCTCAAGCTGCTGCCCATGTT

Function

symbol description
slc5a1 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; pronephric duct; pronephric proximal convoluted tubule; and pronephric proximal straight tubule. Orthologous to human SLC5A1 (solute carrier family 5 member 1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005412 glucose molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko04976 Bile secretion
ko04973 Carbohydrate digestion and absorption
ko04978 Mineral absorption
ko02000 Transporters
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-1524 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; pronephric duct; pronephric proximal convoluted tubule; and pronephric proximal straight tubule. Orthologous to human SLC5A1 (solute carrier family 5 member 1).

Ensembl:

ensembl_id ENSDARG00000013871

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004979 False 2655 mRNA 0.46 15 17135631 17159761
TCONS_00004980 True 941 processed_transcript 0.46 8 17145819 17156675

Neighbor

gene id symbol gene type direction distance location
XLOC_002678 BX324123.4 coding downstream 2721 17104298 ~ 17132910 (-)
XLOC_002677 RNF208 coding downstream 31980 17102902 ~ 17103651 (-)
XLOC_002676 NA coding downstream 46720 17085524 ~ 17088911 (-)
XLOC_002675 fam166b coding downstream 52254 17077177 ~ 17083377 (-)
XLOC_002674 NA coding downstream 108520 17016799 ~ 17027111 (-)
XLOC_002680 ywhah coding upstream 6274 17166035 ~ 17170086 (-)
XLOC_002681 depdc5 coding upstream 11843 17171604 ~ 17222083 (-)
XLOC_002682 rab36 coding upstream 63920 17223681 ~ 17232372 (-)
XLOC_002683 GNAZ coding upstream 94741 17254502 ~ 17284055 (-)
XLOC_002684 FP091248.1 coding upstream 182604 17342365 ~ 17342481 (-)
XLOC_002673 NA non-coding downstream 124733 17006225 ~ 17010898 (-)
XLOC_002666 NA non-coding downstream 1411527 15716739 ~ 15724104 (-)
XLOC_002685 NA non-coding upstream 277729 17437490 ~ 17442421 (-)
XLOC_002688 NA non-coding upstream 350219 17509980 ~ 17519034 (-)
XLOC_002689 BX927385.3 non-coding upstream 373849 17533610 ~ 17543022 (-)
XLOC_002692 BX927385.1 non-coding upstream 467367 17627128 ~ 17627253 (-)

Expression


Co-expression Network