XLOC_026790 (si:dkey-210j14.4)


Basic Information

Item Value
gene id XLOC_026790
gene name si:dkey-210j14.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52667699 ~ 52674118 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052119
ATTTATGGTTTGTTTCTACAAAACGATCGTGAAGAAATTTGAGGTTGTCTGTCGAGAAGAAGATAACACTGCCGTTGGGGGATCTTACgggtattttttttaactttctccGGGATCCCGTTAATGACAGACACCATGAACACAGTCGATTTTCAGACACATTTAACGGCTATAATTGAAATCATGGCGAGAAGCGCTGCTGCGGAAATAAGCAAACTATTCGAGGAGAACTCACTGCTGCTGCGAATGGAGATTTTACGATGTTCAAACGAAAACGAGTCTCTAAAAAAGAAATGTCAGTTTCTGGAGACTGAACTTCAGTCCGCTCGGGAAACCGCAGGGGAGATGAACGGGACACAAGCTCTTCACAGCGTGACAGAAACTGGACAACCTCCCACAATCGACAATGTGTTTGGTAAGGAATGGTGCATGAACCTCTGGAGACAGGAGGAGTCCAGGGTTGGAGAGCAAGAGGATGCACAAAAGCCAATAGATTTGCTGGGTGAAGAACCAGATGTGATTATGATTAAGGATGAGTCGATGAAGAATGCCAGTTGCTCTTTAAACAGTATACCGGAGGACAACAAAAGCAGCAGTCTGACAGGACCAGCGATGTCCAATGATGAGAGATGTGGAGACCGGAACTCTGATGATTATATCACATACACTGTGCCTTCAGACGAACAACCCCAACCGAACATACAGCAGCCACAACCAGAAGAACAAAATCTTCATGGGACAGTTCATGCGCATGGACACATTACGACAGGTGTAAATTTCAACCACATAAAAGTTGAAGCACAAAGGTTGAAATACAGGTGTGTGTTCTGTGACAGACCCTTTAGATATATAAGCCACTTGCAAAGACATATGCGGAAACACTCTGGAGAAAAACCATACATCTGCGCAGTCTGTGGTCGACGGTTCGCTCAGAAAACGTATCTCACAACTCACAAACGCACACACTCCGGCGAAAGGCCGTATGCTTGCATTGATTGCGGAAAGACTTTCTCTCAGAAAAGCTCTCTAAACGTGCATCTCCGttgccacactggagagaagccattTAGCTGCTCGAAGTGCGGCAAAAGCTACGCGTACAAAATTGCTCTTAAAACACACCGATGTTAGAGTAGAAACGAGCCGTTACTGAATATCTTGTGTGCTTTTAGTTTTGGTTTGAAACTGTTCTGGGTCATTATTAAAATACTAtcgttttttgtttgttgaaaCAAAAGGAAATACATGTTAACTGAAAGATATTAGAAACTGAAAAAAGTTGATTGAATTGTTTAGCTCAAAGATTGCTCGattataaatgcaatatatttaGGAGAGTATAAATGTAAATGCTCACCTACACCCTACACTAAAAAGTGTACCATAGTTAATTCCTTTAAGCAATATGTAATTGTTTATacagtgtgaaatgtgttcttgTGAAGCTCCTAGAGAGAATGAACTCTGGATTTGTTATTGCTGTAATTTTGTAGCTGACCTTCATAACTTAatcttaataatatttttacttttatctttTACCCTCTTTGAAGTGTTTACTGTTTTCTAAATTAAAcatcagttttatttaa
>TCONS_00052120
TGAAGAAATTTGAGGTTGTCTGTCGAGAAGAAGATAACACTGCCGTTGGGGGATCTTACgggtattttttttaactttctccGGGATCCCGTTAATGACAGACACCATGAACACAGTCGATTTTCAGACACATTTAACGGCTATAATTGAAATCATGGCGAGAAGCGCTGCTGCGGAAATAAGCAAACTATTCGAGGAGAACTCACTGCTGCTGCGAATGGAGATTTTACGATGTTCAAACGAAAACGAGTCTCTAAAAAAGAAATGTCAGTTTCTGGAGACTGAACTTCAGTCCGCTCGGGAAACCGCAGGGGAGATGAACGGGACACAAGCTCTTCACAGCGTGACAGAAACTGGACAACCTCCCACAATCGACAATGTGTTTGGTAAGGAATGGTGCATGAACCTCTGGAGACAGGAGGAGTCCAGGGTTGGAGAGCAAGAGGATGCACAAAAGCCAATAGATTTGCTGGGTGAAGAACCAGATGTGATTATGATTAAGGATGAGTCGATGAAGAATGCCAGTTGCTCTTTAAACAGTATACCGGAGGACAACAAAAGCAGCAGTCTGACAGcatgtagattgctgaagcactcgtcagaaaaatgatgggaacacagcacaaggctggggctataatgctgagGACCAGCGATGTCCAATGATGAGAG

Function

symbol description
si:dkey-210j14.4 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090871

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052119 False 1592 mRNA 0.40 4 52667699 52674118
TCONS_00052120 True 672 mRNA 0.46 5 52668662 52674089

Neighbor

gene id symbol gene type direction distance location
XLOC_026789 zgc:113210 coding downstream 6457 52647144 ~ 52661242 (-)
XLOC_026788 si:dkey-210j14.3 coding downstream 22962 52641737 ~ 52644737 (-)
XLOC_026787 trim35-13 coding downstream 52952 52607039 ~ 52614747 (-)
XLOC_026786 BX897682.1 coding downstream 450448 52215045 ~ 52217251 (-)
XLOC_026785 NA coding downstream 470875 52194623 ~ 52196824 (-)
XLOC_026791 si:dkey-210j14.5 coding upstream 2459 52676577 ~ 52683241 (-)
XLOC_026792 CT573476.1 coding upstream 218553 52892671 ~ 52899394 (-)
XLOC_026793 NA coding upstream 400729 53074847 ~ 53076911 (-)
XLOC_026794 lpar2a coding upstream 406909 53081027 ~ 53092509 (-)
XLOC_026795 AL954361.1 coding upstream 423469 53097587 ~ 53114299 (-)
XLOC_026784 BX908776.1 non-coding downstream 577695 52064001 ~ 52090004 (-)
XLOC_026783 dre-mir-338-3 non-coding downstream 760137 51907486 ~ 51907562 (-)
XLOC_026781 NA non-coding downstream 769916 51892719 ~ 51897783 (-)
XLOC_026796 NA non-coding upstream 556592 53230710 ~ 53232495 (-)
XLOC_026797 NA non-coding upstream 774998 53449116 ~ 53452782 (-)
XLOC_026802 NA non-coding upstream 899013 53573131 ~ 53589177 (-)
XLOC_026804 BX004869.1 non-coding upstream 1015192 53689310 ~ 53689428 (-)

Expression


Co-expression Network