XLOC_026793


Basic Information

Item Value
gene id XLOC_026793
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53074847 ~ 53076911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053134
TTGTTTTTCACACtagattattttattagtttttgtttttctaataAGGAACACTACAATTTTctcatatttcttttttttctctctcactaGAACAGTTCTAAAGTTGAGGTATAAAAGGAGTTTATACAGACTACCAAGTCTGAAAATGGGGGGGTTTATATACAAGTGAAATGGAGAGAGGAGAGGTAGAGAGGAGGGAGAGAATGGTAAATACAGAAGGAAGCGTGTACTACAAttctactaaaataataataataatcgagaAATAAAATGCTGATGGCGTTTGAGTCGGTGCTGCGGATTCAAACTCCGATTACAATCCAAAATATCCCAGAGTTGTGTGACAAATTGTCCAACATGTAGTGTATCGTATCGTCTGTAGCGTAGCTTATGCAGATACTCAAATAAGACGGTTGATCCTGTAAAATTTGTTTAACGGCACTTCAAACAAACGCCATCAGCTTTGACAAAACCACACAAACAAAATAACACTCGAGACTCCCGATCCAAATAAAAGGTAACTGAAACGCTAAAATGAATATTACAAAGACTAACAAATGTTACTCCAAAACCCCCCAGCgagaatttaaaaataataaaaaagcaaaagcatacaaaaagagaaaaatacaCTGAAACATTCCACAATCTGTACAGTGACATCCATAGATGACtgatagaaaaaagaaaagaaagaaattttGGTGTAGTAATAGCATTAGTCGGAGATATCCATATGAAATGTTTCGAACTAATCTATAGAGGACACGGTGATGATCTTGAAGAAACGCTTGAAAAGCTCCTCAGAGTTTGTTTTTCCATGTGTACATATATAAACAAAACCCCAATTTACATTTCAACCTTATTTAGTCCTTTGTGTAATATATAGAATTTCCATTCATATATCAAAAACGCCCTGCTGCTTCCGCCCATAAAGAGAAAACTAAACGGagaaacgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaacacggACAACTCGTTCTCTGTAACTTcgggaaaacaaaaaaaatcctctACAAGCTGTGGTCCATCTGTTTCAAATCACAACACATCCAGTGCTTATTTTTGGTTAAATTTCGACAGGAGAAAAGCCCTTGTTGCTTGGCTATGTTAACTGATTACCAAAAAAACAGAGTTCCTTAGTTTAGTGAAATTGtaggcaacaacaacaaaacgtaaaaataaaaaaggtcaaattAAAGAGAGACAGCATGCTTTACCAAGAAACAGGTGCTTTCAATTGCACGTACAATACAATCAGTTCAAAAGCACGAGTGAGTGACGAGACAACCCAACCCttagaaaacacacaacacacaccagTAAGACGAGAGGCCGCAGTGTGTGtcacagatgaaaaaaaaaaaacgtgctatTTAAAATACCACGGAAACCCTAGAGAAACCAAACCCCAGCCCGAAGCACTGGATCACCGGGCAGTATGACGTCCTTTTACTTGTTCACTTGTTTATTTGGTCTGTTACTTTCCCACCCTCTCCTTTTAtagtatatttagtttttttttttttgtttattaaaaaaacgaaaggaaaaaactaaaagaaaaacgTAACGTTAGGCTAAATGGAATC
>TCONS_00053136
AATAACTGACTCTACATCTGCTGTAATGTTTGCAAATAGAAAGCTCCACCTGAAACGATGGCCTCATTTTGTTTTTGTGGTTTCTAATTTTACTTTGTGCAGACTGCGGggctttgtttcatttcagcagGCCGAGTTGTTACAGAGCGCGTAATCAATTTGAGATGAGGAGAAAAGGTCTGATTTATTGTGATCCTCATATTATTGTCCTTACGCCGCATAAATATTCAGACAGGGCGACACAATTGGCTGAAAGATGGCAGACTCATTCATAACCGCCGTAACGAGATCATTTTACGCATGGCAACATGCAAATCAGCCCCTTAATGAACAGCAACAAGGAAAGAACTACAGGCTCAAAAGCACACtagattattttattagtttttgtttttctaataAGGAACACTACAATTTTctcatatttcttttttttctctctcactaGAACAGTTCTAAAGTTGAGGTATAAAAGGAGTTTATACAGACTACCAAGTCTGAAAATGGGGGGGTTTATATACAAGTGAAATGGAGAGAGGAGAGGTAGAGAGGAGGGAGAGAATGGTAAATACAGAAGGAAGCGTGTACTACAAttctactaaaataataataataatcgagaAATAAAATGTAACTGAAACGCTAAAATGAATATTACAAAGACTAACAAATGTTACTCCAAAACCCCCCAGCgagaatttaaaaataataaaaaagcaaaagcatacaaaaagagaaaaatacaCTGAAACATTCCACAATCTGTACAGTGACATCCATAGATGACtgatagaaaaaagaaaagaaagaaattttGGTGTAGTAATAGCATTAGTCGGAGATATCCATATGAAATGTTTCGAACTAATCTATAGAGGACACGGTGATGATCTTGAAGAAACGCTTGAAAAGCTCCTCAGAGTTTGTTTTTCCATGTGTACATATATAAACAAAACCCCAATTTACATTTCAACCTTATTTAGTCCTTTGTGTAATATATAGAATTTCCATTCATATATCAAAAACGCCCTGCTGCTTCCGCCCATAAAGAGAAAACTAAACGGagaaacgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaacacggACAACTCGTTCTCTGTAACTTcgggaaaacaaaaaaaatcctctACAAGCTGTGGTCCATCTGTTTCAAATCACAACACATCCAGTGCTTATTTTTGGTTAAATTTCGACAGGAGAAAAGCCCTTGTTGCTTGGCTATGTTAACTGATTACCAAAAAAACAGAGTTCCTTAGTTTAGTGAAATTGtaggcaacaacaacaaaacgtaaaaataaaaaaggtcaaattAAAGAGAGACAGCATGCTTTACCAAGAAACAGGTGCTTTCAATTGCACGTACAATACAATCAGTTCAAAAGCACGAGTGAGTGACGAGACAACCCAACCCttagaaaacacacaacacacaccagTAAGACGAGAGGCCGCAGTGTGTGtcacagatgaaaaaaaaaaaacgtgctatTTAAAATACCACGGAAACCCTAGAGAAACCAAACCCCAGCCCGAAGCACTGGATCACCGGGCAGTATGACGTCCTTTTACTTGTTCACTTGTTTATTTGGTCTGTTACTTTCCCACCCTCTCCTTTTAtagtatatttagtttttttttttttgtttattaaaaaaacgaaaggaaaaaactaaaagaaaaacgTAACGTTAGGCTAAATGGAATC
>TCONS_00053135
AATAACTGACTCTACATCTGCTGTAATGTTTGCAAATAGAAAGCTCCACCTGAAACGATGGCCTCATTTTGTTTTTGTGGTTTCTAATTTTACTTTGTGCAGACTGCGGggctttgtttcatttcagcagGCCGAGTTGTTACAGAGCGCGTAATCAATTTGAGATGAGGAGAAAAGGTCTGATTTATTGTGATCCTCATATTATTGTCCTTACGCCGCATAAATATTCAGACAGGGCGACACAATTGGCTGAAAGATGGCAGACTCATTCATAACCGCCGTAACGAGATCATTTTACGCATGGCAACATGCAAATCAGCCCCTTAATGAACAGCAACAAGGAAAGAACTACAGGCTCAAAAGCACACtagattattttattagtttttgtttttctaataAGGAACACTACAATTTTctcatatttcttttttttctctctcactaGAACAGTTCTAAAGTTGAGGTATAAAAGGAGTTTATACAGACTACCAAGTCTGAAAATGGGGGGGTTTATATACAAGTGAAATGGAGAGAGGAGAGGTAGAGAGGAGGGAGAGAATGGTAAATACAGAAGGAAGCGTGTACTACAAttctactaaaataataataataatcgagaAATAAAATGCTGATGGCGTTTGAGTCGGTGCTGCGGATTCAAACTCCGATTACAATCCAAAATATCCCAGAGTTGTGTGACAAATTGTCCAACATGTAGTGTATCGTATCGTCTGTAGCGTAGCTTATGCAGATACTCAAATAAGACGGTTGATCCTGTAAAATTTGTTTAACGGCACTTCAAACAAACGCCATCAGCTTTGACAAAACCACACAAACAAAATAACACTCGAGACTCCCGATCCAAATAAAAGGTAACTGAAACGCTAAAATGAATATTACAAAGACTAACAAATGTTACTCCAAAACCCCCCAGCgagaatttaaaaACGGTGATGATCTTGAAGAAACGCTTGAAAAGCTCCTCAGAGTTTGTTTTTCCATGTGTACATATATAAACAAAACCCCAATTTACATTTCAACCTTATTTAGTCCTTTGTGTAATATATAGAATTTCCATTCATATATCAAAAACGCCCTGCTGCTTCCGCCCATAAAGAGAAAACTAAACGGagaaacgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaacacggACAACTCGTTCTCTGTAACTTcgggaaaacaaaaaaaatcctctACAAGCTGTGGTCCATCTGTTTCAAATCACAACACATCCAGTGCTTATTTTTGGTTAAATTTCGACAGGAGAAAAGCCCTTGTTGCTTGGCTATGTTAACTGATTACCAAAAAAACAGAGTTCCTTAGTTTAGTGAAATTGtaggcaacaacaacaaaacgtaaaaataaaaaaggtcaaattAAAGAGAGACAGCATGCTTTACCAAGAAACAGGTGCTTTCAATTGCACGTACAATACAATCAGTTCAAAAGCACGAGTGAGTGACGAGACAACCCAACCCttagaaaacacacaacacacaccagTAAGACGAGAGGCCGCAGTGTGTGtcacagatgaaaaaaaaaaaacgtgctatTTAAAATACCACGGAAACCCTAGAGAAACCAAACCCCAGCCCGAAGCACTGGATCACCGGGCAGTATGACGTCCTTTTACTTGTTCACTTGTTTATTTGGTCTGTTACTTTCCCACCCTCTCCTTTTAtagtatatttagtttttttttttttgtttattaaaaaaacgaaaggaaaaaactaaaagaaaaacgTAACGTTAGGCTAAATGGAATC
>TCONS_00053138
GAAAGAGGGCCCTGTCATAAGCACACCACATTCTGCAGGCCCAAACAAGCCCTTGTTTTCTTGATCATGTAGTAATGATTATAAATAACTGACTCTACATCTGCTGTAATGTTTGCAAATAGAAAGCTCCACCTGAAACGATGGCCTCATTTTGTTTTTGTGGTTTCTAATTTTACTTTGTGCAGACTGCGGggctttgtttcatttcagcagGCCGAGTTGTTACAGAGCGCGTAATCAATTTGAGATGAGGAGAAAAGGTCTGATTTATTGTGATCCTCATATTATTGTCCTTACGCCGCATAAATATTCAGACAGGGCGACACAATTGGCTGAAAGATGGCAGACTCATTCATAACCGCCGTAACGAGATCATTTTACGCATGGCAACATGCAAATCAGCCCCTTAATGAACAGCAACAAGGAAAGAACTACAGGCTCAAAAGCACACtagattattttattagtttttgtttttctaataAGGAACACTACAATTTTctcAATCCAAAATATCCCAGAGTTGTGTGACAAATTGTCCAACATGTAGTGTATCGTATCGTCTGTAGCGTAGCTTATGCAGATACTCAAATAAGACGGTTGATCCTGTAAAATTTGTTTAACGGCACTTCAAACAAACGCCATCAGCTTTGACAAAACCACACAAACAAAATAACACTCGAGACTCCCGATCCAAATAAAAGGTAACTGAAACGCTAAAATGAATATTACAAAGACTAACAAATGTTACTCCAAAACCCCCCAGCgagaatttaaaaataataaaaaagcaaaagcatacaaaaagagaaaaatacaCTGAAACATTCCACAATCTGTACAGTGACATCCATAGATGACtgatagaaaaaagaaaagaaagaaattttGGTGTAGTAATAGCATTAGTCGGAGATATCCATATGAAATGTTTCGAACTAATCTATAGAGGACACGGTGATGATCTTGAAGAAACGCTTGAAAAGCTCCTCAGAGTTTGTTTTTCCATGTGTACATATATAAACAAAACCCCAATTTACATTTCAACCTTATTTAGTCCTTTGTGTAATATATAGAATTTCCATTCATATATCAAAAACGCCCTGCTGCTTCCGCCCATAAAGAGAAAACTAAACGGagaaacgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaacacggACAACTCGTTCTCTGTAACTTcgggaaaacaaaaaaaatcctctACAAGCTGTGGTCCATCTGTTTCAAATCACAACACATCCAGTGCTTATTTTTGGTTAAATTTCGACAGGAGAAAAGCCCTTGTTGCTTGGCTATGTTAACTGATTACCAAAAAAACAGAGTTCCTTAGTTTAGTGAAATTGtaggcaacaacaacaaaacgtaaaaataaaaaaggtcaaattAAAGAGAGACAGCATGCTTTACCAAGAAACAGGTGCTTTCAATTGCACGTACAATACAATCAGTTCAAAAGCACGAGTGAGTGACGAGACAACCCAACCCttagaaaacacacaacacacaccagTAAGACGAGAGGCCGCAGTGTGTGtcacagatgaaaaaaaaaaaacgtgctatTTAAAATACCACGGAAACCCTAGAGAAACCAAACCCCAGCCCGAAGCACTGGATCACCGGGCAGTATGACGTCCTTTTACTTGTTCACTTGTTTATTTGGTCTGTTACTTTCCCACCCTCTCCTTTTAtagtatatttagtttttttttttttgtttattaaaaaaacgaaaggaaaaaactaaaagaaaaacgTAACGTTAGGCTAAATGGAATC
>TCONS_00053137
GAAAGAGGGCCCTGTCATAAGCACACCACATTCTGCAGGCCCAAACAAGCCCTTGTTTTCTTGATCATGTAGTAATGATTATAAATAACTGACTCTACATCTGCTGTAATGTTTGCAAATAGAAAGCTCCACCTGAAACGATGGCCTCATTTTGTTTTTGTGGTTTCTAATTTTACTTTGTGCAGACTGCGGggctttgtttcatttcagcagGCCGAGTTGTTACAGAGCGCGTAATCAATTTGAGATGAGGAGAAAAGGTCTGATTTATTGTGATCCTCATATTATTGTCCTTACGCCGCATAAATATTCAGACAGGGCGACACAATTGGCTGAAAGATGGCAGACTCATTCATAACCGCCGTAACGAGATCATTTTACGCATGGCAACATGCAAATCAGCCCCTTAATGAACAGCAACAAGGAAAGAACTACAGGCTCAAAAGCACACtagattattttattagtttttgtttttctaataAGGAACACTACAATTTTctcatatttcttttttttctctctcactaGAACAGTTCTAAAGTTGAGGGAGAGAATGGTAAATACAGAAGGAAGCGTGTACTACAAttctactaaaataataataataatcgagaAATAAAATGCTGATGGCGTTTGAGTCGGTGCTGCGGATTCAAACTCCGATTACAATCCAAAATATCCCAGAGTTGTGTGACAAATTGTCCAACATGTAGTGTATCGTATCGTCTGTAGCGTAGCTTATGCAGATACTCAAATAAGACGGTTGATCCTGTAAAATTTGTTTAACGGCACTTCAAACAAACGCCATCAGCTTTGACAAAACCACACAAACAAAATAACACTCGAGACTCCCGATCCAAATAAAAGGTAACTGAAACGCTAAAATGAATATTACAAAGACTAACAAATGTTACTCCAAAACCCCCCAGCgagaatttaaaaataataaaaaagcaaaagcatacaaaaagagaaaaatacaCTGAAACATTCCACAATCTGTACAGTGACATCCATAGATGACtgatagaaaaaagaaaagaaagaaattttGGTGTAGTAATAGCATTAGTCGGAGATATCCATATGAAATGTTTCGAACTAATCTATAGAGGACACGGTGATGATCTTGAAGAAACGCTTGAAAAGCTCCTCAGAGTTTGTTTTTCCATGTGTACATATATAAACAAAACCCCAATTTACATTTCAACCTTATTTAGTCCTTTGTTGCTTATTTTTGGTTAAATTTCGACAGGAGAAAAGCCCTTGTTGCTTGGCTATGTTAACTGATTACCAAAAAAACAGAGTTCCTTAGTTTAGTGAAATTGtaggcaacaacaacaaaacgtaaaaataaaaaaggtcaaattAAAGAGAGACAGCATGCTTTACCAAGAAACAGGTGCTTTCAATTGCACGTACAATACAATCAGTTCAAAAGCACGAGTGAGTGACGAGACAACCCAACCCttagaaaacacacaacacacaccagTAAGACGAGAGGCCGCAGTGTGTGtcacagatgaaaaaaaaaaaacgtgctatTTAAAATACCACGGAAACCCTAGAGAAACCAAACCCCAGCCCGAAGCACTGGATCACCGGGCAGTATGACGTCCTTTTACTTGTTCACTTGTTTATTTGGTCTGTTACTTTCCCACCCTCTCCTTTTAtagtatatttagtttttttttttttgtttattaaaaaaacgaaaggaaaaaactaaaagaaaaacgTAACGTTAGGCTAAATGGAATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053134 False 1627 lncRNA 0.35 2 53074847 53076760
TCONS_00053136 False 1737 lncRNA 0.36 2 53074847 53076828
TCONS_00053135 False 1807 lncRNA 0.37 2 53074847 53076828
TCONS_00053138 False 1811 lncRNA 0.37 2 53074847 53076911
TCONS_00053137 True 1767 lncRNA 0.37 3 53074847 53076911

Neighbor

gene id symbol gene type direction distance location
XLOC_026792 CT573476.1 coding downstream 175453 52892671 ~ 52899394 (-)
XLOC_026791 si:dkey-210j14.5 coding downstream 391606 52676577 ~ 52683241 (-)
XLOC_026790 si:dkey-210j14.4 coding downstream 400729 52667699 ~ 52674118 (-)
XLOC_026789 zgc:113210 coding downstream 413605 52647144 ~ 52661242 (-)
XLOC_026788 si:dkey-210j14.3 coding downstream 430110 52641737 ~ 52644737 (-)
XLOC_026794 lpar2a coding upstream 4116 53081027 ~ 53092509 (-)
XLOC_026795 AL954361.1 coding upstream 20676 53097587 ~ 53114299 (-)
XLOC_026796 NA coding upstream 153799 53230710 ~ 53232495 (-)
XLOC_026797 NA coding upstream 372205 53449116 ~ 53452782 (-)
XLOC_026798 nr5a5 coding upstream 380281 53457192 ~ 53465249 (-)
XLOC_026786 BX897682.1 non-coding downstream 857596 52215045 ~ 52217251 (-)
XLOC_026785 NA non-coding downstream 878023 52194623 ~ 52196824 (-)
XLOC_026784 BX908776.1 non-coding downstream 984843 52064001 ~ 52090004 (-)
XLOC_026783 dre-mir-338-3 non-coding downstream 1167285 51907486 ~ 51907562 (-)
XLOC_026781 NA non-coding downstream 1177064 51892719 ~ 51897783 (-)
XLOC_026802 NA non-coding upstream 496220 53573131 ~ 53589177 (-)
XLOC_026804 BX004869.1 non-coding upstream 612399 53689310 ~ 53689428 (-)
XLOC_026805 NA non-coding upstream 765621 53842532 ~ 53842784 (-)

Expression


Co-expression Network