XLOC_026796


Basic Information

Item Value
gene id XLOC_026796
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53230710 ~ 53232495 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053139
CAAGGAGAATGGCCAAGGAGAACCATCCGACTTTGATTCCAGctagtgagtaaatgacagagGTGACTTGTTATGGTGCAGCAGGTACGGCTAATCTTCAGGCTTATTTAAGGAGCTTCCAAGTTGCGTTCGGGAGACTGCCTTGGAGTATCATTTTTTGTTTGACTTTCTTTGGCTTACccactgcttatattatttttgtttatttgaaatttgcTCCAATGTAATTTGTTGTTTTCAACGTTATGTTAGACATTTAATTTGGTTACTTTGATACCCCTTTgcactatttttttgtttttttgtaacctttaaataaatatctttttgcATTTTTTCGTTTAACTTCGTTTGGCTTCCCTTCATTTTGTTGCGTGATTGAGCTGGTACGTAACAATTATGAGCAGCACCTACACTTATTTCCTTTGTTCTCTATTTCCTCCTGGGGATACTTATCTTCGTCATATCTTATTAACACGCTTAGAAGTAGAAATGATATTACCATTTATGAACTTTGATAATGTTTATAGTCTAACAAACCCATACAAAGTCAAGAGATATCCATGCATTTCCAcatcacataaacaaataaaatgaacaagaacTAGGCAACTTCCATAATCTAGCCTCGTCCCAACTGTACAATGCACTTAATGTAATTGTCCCAAAAGTTTAGTATTTTAACCTACAAGAAAAAATATCTTAAGTACAGCACCAAATCACTTTGCATCATGATGACCATTTGCCAGTGTAAGTATTTTCCTCCAGGAGGCAGTGTTCAACCGTATTTCCACAACTAATAAAATGCCTGAAATGAAAATAATGGAGCATTTCAATACaagattttacattatttttaataataattaaaaaatcaacaGCAACAGACCAATGTTTTTTCAGCCATTAAGAATGTCATGTTACACACAAATAAAGTCAAATCAAGTTCAAAGACAagttatatatttacaaaaatatacacatttccCCACCAATTTCTGAACTTCTTATCTAACGCTTTAGGAAAGGCATTTCAAAGTTGCACATAAAGCCTTAATCCGAAAGTCAATCCTTTGTGGCGCTAAAATGAGGAAgatgtagttttatttttatacaattataATGATATGTATATAAATTATTCCTCAGAGGACATGTTCATCTGTTTCAGCATCTTCTGCTCTCTGCGGATCCTCATACGCTGCTTAAAATCCTCCAATTCTTGCCTCTGAAAAACAGCACATAGAAAACAGACTTATCATTGAAGCTCACTTCTTGCCGACTAAAAAGGGGTTTCAAGCATCAAGACAAATAAGTGTACAAtaacaatcttttaaaaaaagcatacatCACATGtgtagctttgttttttttttcttagcaaaAATAACGCatgttgtacatttttgtactaaTTTACACTAAAATGtatggcaacactttattttgatggttcacttgagtattag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053139 True 1469 lncRNA 0.33 2 53230710 53232495

Neighbor

gene id symbol gene type direction distance location
XLOC_026795 AL954361.1 coding downstream 116411 53097587 ~ 53114299 (-)
XLOC_026794 lpar2a coding downstream 138201 53081027 ~ 53092509 (-)
XLOC_026793 NA coding downstream 153799 53074847 ~ 53076911 (-)
XLOC_026792 CT573476.1 coding downstream 331316 52892671 ~ 52899394 (-)
XLOC_026791 si:dkey-210j14.5 coding downstream 547469 52676577 ~ 52683241 (-)
XLOC_026797 NA coding upstream 216621 53449116 ~ 53452782 (-)
XLOC_026798 nr5a5 coding upstream 224697 53457192 ~ 53465249 (-)
XLOC_026799 soul5 coding upstream 243660 53476155 ~ 53486169 (-)
XLOC_026800 shfl coding upstream 258610 53491105 ~ 53508580 (-)
XLOC_026801 notch3 coding upstream 293530 53526025 ~ 53559581 (-)
XLOC_026786 BX897682.1 non-coding downstream 1013459 52215045 ~ 52217251 (-)
XLOC_026785 NA non-coding downstream 1033886 52194623 ~ 52196824 (-)
XLOC_026784 BX908776.1 non-coding downstream 1140706 52064001 ~ 52090004 (-)
XLOC_026783 dre-mir-338-3 non-coding downstream 1323148 51907486 ~ 51907562 (-)
XLOC_026802 NA non-coding upstream 340636 53573131 ~ 53589177 (-)
XLOC_026804 BX004869.1 non-coding upstream 456815 53689310 ~ 53689428 (-)
XLOC_026805 NA non-coding upstream 610037 53842532 ~ 53842784 (-)
XLOC_026811 NA non-coding upstream 1515901 54748396 ~ 54784321 (-)

Expression


Co-expression Network