XLOC_026797


Basic Information

Item Value
gene id XLOC_026797
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53449116 ~ 53452782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053140
gaaaatgtatataaaatgccAAAAGCTGATTTAATGAACGTAACTTACAAAACGTAAACTTAGTGATGATGGTGAAAAATAATTgagattatttaaaaatgattttatttttctaatcCTGTCAGATGGGAATGATCCATAATCAAAAGAACTTAGGAGAAAACAAAATCTACCGACATGAACATGGAAACAGCAAAAGGAAAATATACAAAACATCAATGTGCTTTCTGAAATGAACGAGTGAATCACCACAATTGCcagaacataaataataaatctgaGACTACACAGAAAACTCTAGCTCATCCTTACCCAAATAAATACACCTCAGGTGACCTAACATACTACAAAATTGCACAGAATCCAGTTACGTTAAACCATCACGTTCCACCCAGCAGACAATCACATGCAGACTACACAACTCCCACTCATTTGACACAGAAACATCATTCAACCatttcaaaaatgatttttttttttttgctctttacaAAAATATGTACATAAAGTTAGTCTGATTCTCGACAGGAGACGGCAGCCTAACCGAATCAGCTCTTTTAGTGCTTTGATGAGGAGGAACAGATTAAATGCCactattttctttacaaaaaGACAACTAGAGCCATTCAAGAAACCAATAAGGCCAAGTTAGACAGTTTGAAGACAATTCATAGACCTTCATTAGAAAGGCGGCTCATCTGCCCAATCATTCACTTTCTGTTAAGAGTTTCTTGCTATTGGTATGTCACATTTCAGTGTGTACATTTAATTTCACCAAACAAGACCACTTGTTCACTCAGCTCTAGGTCCGTAAGCGAGATTCAAGATCAGACTTGCGTTTATTGTCTCATTCCGTCCCGCtcacactcccattcacaccaGCACATCCAGCTCTACAAGTGAAGCAGCAGGGTAGCTTATTCATGTCTTACAAATCTCCACAATATACAAATCATCGTCAAAAAAGGAAAGAATTCAGCattcaaatatacagtatattaaatcagccttggaattttttttcttatattattatttcaggtACAGCTAAACAGAATACAAAGACATCCTTCATCTTTTTTATATAAGTGGAAATCGAAAGCACGTTCTGGCATCTTTTTgcttcttttttcattcattcttaaTTAAAGCAAGAGTGGAGGAAAGATCTTCAACATGCTCTCTCCTGAGTTCCAAAAGCTTGAGAGATCCAGTTCGATTAGTTCCCAAGTAAGAAAACAAACATCCAGGTGTCTATGACTGACTTTAGGAAGGCAGAATAACGGGGCGGTTTCGGTTAGACTGAGAGGCTGTTGACAATGAACAGACGATAAGAAGGCTTGTGTTGGTTTGTGCCCTACATTCATCAAAGATCTGATTTCATCCGCGGCATCCTTTCACACATCAAACCTTTAGGCTCAATGAGCAAACAAAAGGagcgtttcttttttttatttgcgttgtGGGGGACATTCATGGTACTTAAATAACGAGAATGGAAGATTCGCCAAGTTGAAACGCTGAGTATTGTTTTCTTCTAAACATGACTTGAGATCTCTTGAGTTACCTGAAGAAAATGGCAATGGAGTTTTATGAACAGACCTTTGTAACCTGACCTGTAGTTATGCGCAAAGAGGCTTTGCACGGTCACCTCTGAGGGCACTTCATTTTAGGGTTTCTGTATTAGGGCCTGTTTTATTTGTTATCCCACTTTTTCATCTGGCAAGCACGTCCCCGTGTCCCTGCATCTCTACTAAAGACGGGACAGAAACCTGGCGTGACGTGGCCAGCTCGGGCATTGTTGGTATTTGCAGCAAGGTTTATTTTGGGGTCCCGAGCTTCTTTGGGGTTCCCGGGCGCTTGCGCTCCCAGAGGTGGCTGGGAATGGTGAAGGCATCCACACTCATGGACATGGTTTTGGACGGGATGGCTGTGAACTGCTTGCGGTCAGAGCTGTACTTGTAGATCGACTCCACCATGATGGGACTGATTACTCGTGGGCCAATACCAACGAGCCGAACCATCTCCTCGGTCTCAGGGTTCATGGTGTAAACTGCCCGGAATTGACAGCTGGCGTCCCGGAACAGGATGAGGAAATGGTTTGCAGCacttttctccatttccttttaGCATAGAAGAAAC
>TCONS_00053141
TTTTCCAGCAGACAATCACATGCAGACTACACAACTCCCACTCATTTGACACAGAAACATCATTCAACCatttcaaaaatgatttttttttttttgctctttacaAAAATATGTACATAAAGTTAGTCTGATTCTCGACAGGAGACGGCAGCCTAACCGAATCAGCTCTTTTAGTGCTTTGATGAGGAGGAACAGATTAAATGCCactattttctttacaaaaaGACAACTAGAGCCATTCAAGAAACCAATAAGGCCAAGTTAGACAGTTTGAAGACAATTCATAGACCTTCATTAGAAAGGCGGCTCATCTGCCCAATCATTCACTTTCTGTTAAGAGTTTCTTGCTATTGGTATGTCACATTTCAGTGTGTACATTTAATTTCACCAAACAAGACCACTTGTTCACTCAGCTCTAGGTCCGTAAGCGAGATTCAAGATCAGACTTGCGTTTATTGTCTCATTCCGTCCCGCtcacactcccattcacaccaGCACATCCAGCTCTACAAGTGAAGCAGCAGGGTAGCTTATTCATGTCTTACAAATCTCCACAATATACAAATCATCGTCAAAAAAGGAAAGAATTCAGCattcaaatatacagtatattaaatcagccttggaattttttttcttatattattatttcaggtACAGCTAAACAGAATACAAAGACATCCTTCATCTTTTTTATATAAGTGGAAATCGAAAGCACGTTCTGGCATCTTTTTgcttcttttttcattcattcttaaTTAAAGCAAGAGTGGAGGAAAGATCTTCAACATGCTCTCTCCTGAGTTCCAAAAGCTTGAGAGATCCAGTTCGATTAGTTCCCAAGTAAGAAAACAAACATCCAGGTGTCTATGACTGACTTTAGGAAGGCAGAATAACGGGGCGGTTTCGTTATTTCGTTAGAGCAAGACAGACACGAAACGCACAGCAGCAGGGGACTTTTTCTTATAACGTCACATAAAGGTTAAGTTGCTGCGCCCATTTGTAATACAATTCAACAGTCAAGTCAGGTTAGACTGAGAGGCTGTTGACAATGAACAGACGATAAGAAGGCTTGTGTTGGTTTGTGCCCTACATTCATCAAAGATCTGATTTCATCCGCGGCATCCTTTCACACATCAAACCTTTAGGCTCAATGAGCAAACAAAAGGagcgtttcttttttttatttgcgttgtGGGGGACATTCATGGTACTTAAATAACGAGAATGGAAGATTCGCCAAGTTGAAACGCTGAGTATTGTTTTCTTCTAAACATGACTTGAGATCTCTTGAGTTACCTGAAGAAAATGGCAATGGAGTTTTATGAACAGACCTTTGTAACCTGACCTGTAGTTATGCGCAAAGAGGCTTTGCACGGTCACCTCTGAGGGCACTTCATTTTAGGGTTTCTGTATTAGGGCCTGTTTTATTTGTTATCCCACTTTTTCATCTGGCAAGCACGTCCCCGTGTCCCTGCATCTCTACTAAAGACGGGACAGAAACCTGGCGTGACGTGGCCAGCTCGGGCATTGTTGGTATTTGCAGCAAGGTTTATTTTGGGGTCCCGAGCTTCTTTGGGGTTCCCGGGCGCTTGCGCTCCCAGAGGTGGCTGGGAATGGTGAAGGCATCCACACTCATGGACATGGTTTTGGACGGGATGGCTGTGAACTGCTTGCGGTCAGAGCTGTACTTGTAGATCGACTCCACCATGATGGGACTGATTACTCGTGGGCCAATACCAACGAGCCGAACCATCTCCTCGGTCTCAGGGTTCATGGTGTAAACTGCCCGGAATTGACAGCTGGCGTCCCGGAACAGGATGAGGAAATGGTTTGCAGCacttttctccatttccttttaGCATAGAAGAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053140 False 2142 lncRNA 0.41 2 53449116 53451376
TCONS_00053141 True 1874 lncRNA 0.42 2 53449116 53452782

Neighbor

gene id symbol gene type direction distance location
XLOC_026796 NA coding downstream 216621 53230710 ~ 53232495 (-)
XLOC_026795 AL954361.1 coding downstream 334817 53097587 ~ 53114299 (-)
XLOC_026794 lpar2a coding downstream 356607 53081027 ~ 53092509 (-)
XLOC_026793 NA coding downstream 372205 53074847 ~ 53076911 (-)
XLOC_026792 CT573476.1 coding downstream 549722 52892671 ~ 52899394 (-)
XLOC_026798 nr5a5 coding upstream 4410 53457192 ~ 53465249 (-)
XLOC_026799 soul5 coding upstream 23373 53476155 ~ 53486169 (-)
XLOC_026800 shfl coding upstream 38323 53491105 ~ 53508580 (-)
XLOC_026801 notch3 coding upstream 73243 53526025 ~ 53559581 (-)
XLOC_026802 NA coding upstream 120349 53573131 ~ 53589177 (-)
XLOC_026786 BX897682.1 non-coding downstream 1231865 52215045 ~ 52217251 (-)
XLOC_026785 NA non-coding downstream 1252292 52194623 ~ 52196824 (-)
XLOC_026784 BX908776.1 non-coding downstream 1359112 52064001 ~ 52090004 (-)
XLOC_026804 BX004869.1 non-coding upstream 236528 53689310 ~ 53689428 (-)
XLOC_026805 NA non-coding upstream 389750 53842532 ~ 53842784 (-)
XLOC_026811 NA non-coding upstream 1295614 54748396 ~ 54784321 (-)
XLOC_026812 NA non-coding upstream 1338771 54791553 ~ 54820900 (-)

Expression


Co-expression Network