G762080 (LOC106595063)


Basic Information

Item Value
gene id G762080
gene name LOC106595063
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 630642 ~ 634437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU866583
TGCCCTCTCCCATGGCCCCactctggcttcctgtcctatacaatagacaatgtaccttaccagaatggcaaatgcatcCCTCTTTTATATAGGACAGTATATTTATCCATATATGTACCTAATTTCTCCCACATAACCCCCCTCTGGTGCTTTAATAAGCACCAAAAACTTAAAAAGGACATATATGGAACATAATATCAACAGTCGATtatcaaaaaaaaatatttttaaataaaaaataaaaaataattaaaaaataaaacttcCTAATCACCTACACCA
>TU866582
AGCATGTAAATACATAACCTTGTCTGAGGTTCTCAGCTACGCgaaaaagaaaaatatatataataaagcaATGAGTCAAATAATAAATTGAATGAGAAAACACTAGGCCTCCATGCAGTTACAAAATAAAATTGACACATCATTCTACATTTAAGCTTTCCACATGATTCTCCCTCTCAGACACCTCTCCAACAACCGTGATACCATCAATACCAACTTCTGTTAGAAGATTAAGGACATGGTCCGTAGACACTTGTAACTGGGATATCCCACTGTTACCTACATGTTTTTAAATATAACCTAGCATTTTAGAAGGCAAAACTAACTTTTAATTAAAAGAAACCAGATATATTCATTGATATACCTATAAAAACATTTGATAAAACATACTAAAACACAAGGCCGTGAGCAAAAGTAGACCTTACATAACACCTCTTGTACTTACTACGGAAATGACCCTTTTTGTGGATATGCATCAGTTGACTTTCTTATGAATTTGGAATGACAGCATAACTGTCCATTTTCATCAGTATAGTGGCCTGGCCTACCCGGCACAGGATCAACTATCACCGGAGTGTCAGCTCTACTTACAAACATCTGTTTAACCGTTGTCTGGATCACAAGTGATTTCACCCAGGGTAAAACACAACAAAATACAATACCCAGAGCCAATAACCTTCCAGCATAAAGGCCGTCCTAGCAAACATGGCTCCCCATTTCCCCAATGCTAAGTCCAACCAATCCCAAACATGAGAGTCCACCCCAGCATTTTTCTTAACCTCTTTTCTTAACCCTTTAAGTTTAGCCATAGCGATTGCAAGGGATCCATTAGGCACAGTGTTATTGGGAATAAAGGTGCAACAATCATCCCCGAACATAACAAACTCCACCCTTCTCTGCAAAAAGCCAATTGAGAGCCTGTCTATTTTGGCAAGACATTTTACTGGTATCCTGTACCTGTTCCCCCAACGCCGTTAAAGCCGAGTCAGTATAGTTAATGAATCTCTGTTGGTTATAGTATATGTAATTAATCCACTCTAAGTTCTTATTTGATGTTATCCACAAAAATTAAGATTCAAATCCAGATTTAACTTCATCTCTTGCCTTGAACTCCCAACCCAGTCTAATTTAATATGGTTCTGCCTCTAGTGCTCCCTCGAGCAATCCTACATTCTATGTCACACAAGGGAATGTAGTATTTTCTCTGAATattgaacattttacatttaacgCATTCTTCAAATGATGCAGGTTCAGGTACTATCAAAAGATCAGACAAAGGTGATTTTCTACACAAAATACAATTGTCCCTCCTATGTTTATTTCTGCTGTATACTTAGCCTAATCGTACCACTCATTCTTCACTATTCATTTCATGTGGTGTCCTTGAGTGGTTCAGAGTCtggtatgtctgtgtctgtcatcTTTGCAATGTTCTTATCTTGAGGTAGGTCATTAAAGTTAGTCAAAAAGttcaaaatgtcagtaaagaaccCTCCTGGTTCTGATGCTTTCTAGCTACCGCAGGCTCTTCCTGTTTAGGTATTGGCGTAAGACCAATTCTGAATGACTGAGGAACTACTCCCTTCAGCCAATCTTGTTCTCATTATTTCACCTATTAATTCTTCACCTTCAACTGGTTCAATCTGATTCATGGTGAGCACCCACTCGTCTACTTCTTTGGTTAACGTCAGGTCACATCCTTTTGAGTCCCAAATGACTTCTCTCTTCGTTCGATGATATGTCCATCCACCAAATGCAATCTCCGGTAAGGGTTTGATCCTTTTGTCTTCTCTTCTTCTGTTTCAGTTATATGTTGAGGTGGGACAGAGATTCTAACCTTGTCAGTCTTTTTAGATTGTTTGACtggttcctctcttctcttcctgtttccACCCTACATCTTGATTGTGCGTGAGTCTGTTGTTGCTATACTAGCGTTCACTGTTACTTCTGTTATGTCAATATCATTGTTCTTCTGTGGCTCTAACTTCAAGTGTCTGTTAAGGAGACAATTCAAGAGCTGAAAAGTCAATTTTGGGGAAATCCCCATTTTCTTCAGCTTGCTGGACTTTTCCTCCTCTTTGCGGGGTCTCTCCTTCTGTTCCtgtgaggcctctcctcctctgtcttcccCTGAGGCTCCCTCCTCAGGCCGGACTGTGCTTCCATCTGGAAGGTGACCATTTCAGGGAAGAGATGTTCACATTCTTTAGGCGATACCTCGGGGTCCCACTGTAGAAGGCTTCCGTCAACAGAGTCTGCCCCAACAAGTATATCATCAGGAGTGGCAGACATGTTACCCCCTCCCACTTCTGGGCTTTCTGGCCATACTGGAGGAAACTTTGGTTGTTTGTCTCTTTTCTTTTCAGGCTCTTTTTCCCTGGTTCGTTCTTCTGAGTATGTTAGCCGATGCACTCGTTGTATCTGGTCTGCCATTTTCTTGATTCCTCCCCGGCGCTTTGATCGATTCCGCTGCTCCTGCTCCCTCCGGGGTCCCTTCTGGTGAATCAGCATCCTCTGTGTCCTCATCTCTGTATGGTTGTGTCCTTCTCTCCGTCGGGACTCGGGTGCAGTGGTTTAGATGATACCACGTCTTGCTTCCTTTCACTTGGACGGCCGTGTTTGTGGCTGTTGCC

Function

NR:

description
uncharacterized protein LOC110500403

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU866583 False 282 lncRNA 0.33 1 630642 630923
TU866582 True 2639 lncRNA 0.42 2 631007 634437
Loading

Neighbor

gene id symbol gene type direction distance location
slc25a11 slc25a11 coding upstream 3900 599485 ~ 626742 (+)
trappc1 trappc1 coding upstream 41928 585248 ~ 588714 (+)
kif1c LOC106578242 coding upstream 97697 447784 ~ 532945 (+)
LOC110532983 NA coding upstream 243565 385104 ~ 387077 (+)
LOC110531307 NA coding upstream 332105 296281 ~ 298537 (+)
eno3 LOC100196671 coding downstream 40612 675049 ~ 692088 (+)
LOC110531348 NA coding downstream 67536 701973 ~ 716790 (+)
LOC110494899 LOC108250468 coding downstream 93510 727947 ~ 861366 (+)
LOC110518852 LOC105009281 coding downstream 283115 917552 ~ 979359 (+)
LOC118965950 NA coding downstream 394989 1029367 ~ 1031408 (+)
G762079 NA non-coding upstream 809 629625 ~ 629833 (+)
G762073 NA non-coding upstream 10078 620134 ~ 620564 (+)
G762069 NA non-coding upstream 31629 598773 ~ 599013 (+)
G762068 NA non-coding upstream 31992 598436 ~ 598650 (+)
G762066 NA non-coding upstream 34965 595446 ~ 595677 (+)
G762081 NA non-coding downstream 5599 640036 ~ 640401 (+)
G762082 NA non-coding downstream 6668 641105 ~ 641491 (+)
G762084 NA non-coding downstream 13508 647945 ~ 649581 (+)
G762098 NA non-coding downstream 62021 696458 ~ 696910 (+)
G762100 NA non-coding downstream 65709 700146 ~ 700359 (+)
G762071 NA other upstream 12399 616674 ~ 618243 (+)
G762053 NA other upstream 88719 541213 ~ 541923 (+)
G762031 NA other upstream 185886 443582 ~ 444756 (+)
G761998 NA other upstream 234938 394431 ~ 395704 (+)
G761956 NA other upstream 321213 301531 ~ 309429 (+)
LOC110510452 LOC106589966 other downstream 1167177 1801614 ~ 2053687 (+)
LOC110514165 mog other downstream 1190535 1824907 ~ 2106829 (+)
G762593 NA other downstream 1420302 2054739 ~ 2097429 (+)
G762598 NA other downstream 1435771 2070208 ~ 2071965 (+)
LOC110531331 LOC106578192 other downstream 2657469 3273715 ~ 3299102 (+)

Expression

G762080(LOC106595063) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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G762080(LOC106595063) Expression in each Bioproject

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G762080(LOC106595063) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network