XLOC_026799 (soul5)


Basic Information

Item Value
gene id XLOC_026799
gene name soul5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53476155 ~ 53486169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052130
tcagaaactgctgatctactgggattttcacgcacaaccatcactagggtttacagtgaatgttctgaaaaagagaaaatatccagtgagcggcagatctgtgggcgcaaatgccttgatgccagaggagaatggccagactggtttcagctgatagaaaggcgacagttactcaaataaccactcgttcaCCATGTGatgaagcgtgaatcatctcagactggtttcacgaacatgacattgagttcactgtactcagatggccttcacagtcaccagatctcaatccaatagagcaccttaagatgtggtggaacaggagattcgcatcagccgataaatctgcagagactgcttgatgctatcatgtcaatatggaccaaaatctctgaggaatatttccagtaccttgtttaacctatgccacaaaggattaagccagttctgaaggcaaaaaggggtccaacacgATATGGGTATGGTGTACCtaaacactgtatatatataaacattaaaattaaagtcAAACCCACAGCTACAGTAATACATTTTGTAGATTTACAGTAACTGACTGATTgaacaaataattttaaagtgATCTCTTAATATTTTCATAGCTTTTAAGTATCCAGTTTGGTTCCCGAAGTTGTTATAACCTTAATAAAACCCTTTTTACcaataaaaattatgttttttacttcatttgacattaaatatacaaataaaaagtgattttttcttttgttacaaAACTACATATACAACAGggatttaaaaagaaagaaaaaaaagaaagaaagaaatattgcCCCTAGTGGTTAGAAAACTCTTACTTAACGTGCTTACATGACAGCAGAGCTGGGGTGTGTTTTGGAGGCGGGAGCAGATTTCATAacattgcatgtacagtataagTATCAGCCTGCAGGCACACATGCACACGTTTCCTCTCTGCTCAGCCTGAAGCTACAAAATTCTGCAACATGATTGGCTTGACAGGGGTGATCGTGCTGCTCATTGCAGTGACTGTAGATGGAAGAATTGGAGACTCCACTAGTGAATCCAGTTACTGCTCCGAGACGAAAGAGTGCTTGCTGTTTGACTTGGTTTGTGCGGGAAGTGATTATGAGGTACGCCACTATGATGCTGCCAAGTGGGTGACCACAGAAGCTGAATCTTATGTCATGGAAATTGCGGTTTCAAGAGCATTCAGGAAACTTTTTAAGTACATCACCGGAGAAAACGAGGCTGGTGCAAAGATTGACATGACCGGGCCAGTCACCATAAAAGTCAACGGGAGCTCGAACATGTGGCAGTCGTCAGTGTATGTGCTCAGCTTCCTCCTGCCCTCCAACTACCAGAGCAAACCACCCAGACCAACTGATCCATCTGTATACTTCACAGACAGTCCAGATATGAAGGTGTACGTCAAAAGCTTCGGTGGCTGGATGTTTTCACTCGTGTCCAAATATCAGACTCAGAGTCTGAAGACAGCGCTGGACAATGCACAGGCTACATATGAGACAGACTACCACTATAATGTGGGCTATAACAGCCCAATGAAGATTACGAACAGGCACAATGAAGTGTGGTTTATTGTGAAGGGTGAGCCTGTGTGTCCTAAGAGTGAATAACTTCAAGTATTTGAGAGAGCTACAAAGAACAGCAGTGCATTACCCTACACTACAGTCCCTGAAAACTAACCTTCctctttttatacatttttaaaatgtgtgttattTTATTCAGCATTAACTGGATTTTACACCATAAATACTTACAATTTTAACGGGTACACCAAAAAAATGTGCATAgcattaactaaaactaaaaaaaatacaa

Function

symbol description
soul5 Predicted to enable heme binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110718-2 Predicted to enable heme binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000075015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052130 True 1842 mRNA 0.40 8 53476155 53486169

Neighbor

gene id symbol gene type direction distance location
XLOC_026798 nr5a5 coding downstream 10906 53457192 ~ 53465249 (-)
XLOC_026797 NA coding downstream 23373 53449116 ~ 53452782 (-)
XLOC_026796 NA coding downstream 243660 53230710 ~ 53232495 (-)
XLOC_026795 AL954361.1 coding downstream 361856 53097587 ~ 53114299 (-)
XLOC_026794 lpar2a coding downstream 383646 53081027 ~ 53092509 (-)
XLOC_026800 shfl coding upstream 4936 53491105 ~ 53508580 (-)
XLOC_026801 notch3 coding upstream 39856 53526025 ~ 53559581 (-)
XLOC_026802 NA coding upstream 86962 53573131 ~ 53589177 (-)
XLOC_026803 rdh8a coding upstream 201476 53687645 ~ 53722182 (-)
XLOC_026804 BX004869.1 coding upstream 203141 53689310 ~ 53689428 (-)
XLOC_026793 NA non-coding downstream 399244 53074847 ~ 53076911 (-)
XLOC_026786 BX897682.1 non-coding downstream 1258904 52215045 ~ 52217251 (-)
XLOC_026785 NA non-coding downstream 1279331 52194623 ~ 52196824 (-)
XLOC_026805 NA non-coding upstream 356363 53842532 ~ 53842784 (-)
XLOC_026811 NA non-coding upstream 1262227 54748396 ~ 54784321 (-)
XLOC_026812 NA non-coding upstream 1305384 54791553 ~ 54820900 (-)

Expression


Co-expression Network