XLOC_026807 (si:ch73-208g10.1)


Basic Information

Item Value
gene id XLOC_026807
gene name si:ch73-208g10.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54502350 ~ 54524194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052139
ATCCTGTTCTGAGACACACAACACCATGCTtatcacatttaaaacaaaataaacccaTTTCGCCCACAACAGCAAAGGAGATTCTGCATTCCCAGCGTCACCACCAGCATTGTTGCCTATCATTGTCAGTTTTGATGCTGACAATGCCTCGGCTTCAACAGTTTATAGCCCTGCTGCTCATCACTCTTGCTTATGGCGACGACTGCCCCATTTCCTTCAACATTCCTGAGGTGGTTGAATATGGAGCTTCATTCTCAGTGAACTGCTCCACCAACGTCACTGATCATTTGGGCTTGAGTTGGGAGCCAAATAAAGAGGCTGCGGAGAAAACTGGCGAGATCTCCAAAACTCTAGTGGGAGAGTGGGAGAGCGAATTCTCTTGCTACATCTACTTCAATGAAACACAGCCGTGTTCACAGAATCTCTCAGTTACCATTTATAAGACTCCAGACAGTGTTTCTATCAGCGCCTTGAATCACATTGGACCAATGATAGAGGGAATTCAGTATGAGCTCCAGTGTGATGTTTACAATGTGGCTCCTGCTCAAAGTCTCACTGTCAACTGGTACAAAGGAAAAACTCTGGTGAATCAAACCAGCTTCACTGACACCAGCAAGAGTTCAGTCAACATGACATCTAATCTCCTGATCCAACCGGACAGAACTGATAATGAAGCTCAGTACAGGTGTGAAGCAGCGTTAAACCTGGGAGAAGAAGGACCTCAACCTCCTCCTACAGTCACATCAGAACCTCTCAGCATTACTGTTGAATatgactgcccCATTTCCTTCAACTTTTCTGAGGTGGTGGTTGAATATGGAACTTCATTCTCAGTAAACTGCTCTGCTGAAACCACCAAATATTTGGGCTTGAGTTGGGAGCTAAATGAAGAGACAGTGGAGATCACTAGTGAGATCTCCAAAACCGTGGATCAAATGACGGAGTGGGAGGGCAAATTCTCTTGCTACATCTACTTCAATAACACACAGCCGTGTTCCCGGACTGTCTCAGTTACCATTTATAAGACTCCAGATAGTGTTTCCATCAGCACTGTGAATCACACTGGACCAATGACGGTGGGAAAGCAGTATGAGCTCCAGTGTGATGTTCACAATGTGGCTCCTGCTCAGAGTCTCACTGTCAAATGGTACAAAGGAGAAACTCTGGTGAATCAAACCAGCTTCACTGACACCAGCAAGAGTCCAGTCAGTAAAACATCTAAACTCCTGATCCATCCAAACAGAAATGATGATAGAGCTCAGTACAGGTGTGAAGCGGAGCTGAATCTGGGAGAAGAAGGACCACAACCTCCTcctaaaaacaaatcaaaacctCTCAGCATTACTGTACAATCACATCATATTCTAGATGGTGGATGTCCGATTGAACTAAAGCCAAGGAGAGCTGTTGTGAAATATGGCAGTAGTGTTTCAGCTGACTGCAAATCATTTGTCCCACATGATGGGATAGGATGGGAAGCCACTGTGGGAGGAGTGCCCCTGTCCAAAGCCAGTCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGGAGATACAGCCACCATTCTGCTACATAAACTACAAACAGCAGTGTGAAGTAGCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCTATCAGCGCTGTGGATCAAATAATAAAGGAGGGAAACCAGTATGAGCTCCAgtgtgacatttataatgtgGCTCCTGCTGAGAGTCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTCACAGACACTACCAAGAGTCCAGTCAACATAACATCTTATCTCCTGATCCATCCAGTCAGAGCTGATAATGGAGCTCAGTTCAGATGTGAAACAGAGCTGAACCTGGGAGAAGAAGGACCTCAACCGCCTCCTAAAAACACATCTGAACCTCTCAGCATTCCTGTACACTATGCTCCAGAAATTAAATCTTGTCAGCCCTGGTCACCAAAGAAAGGGTCTACCTTAGATTCATATCCAAAACATTTACATTCTGTTGTGGGCAACCCCCATCCAAGCATCTCCTGGAAACATAATTCATCGCCAGTCAATGCTTCTGCACCTCTTACCGAAACAGATTCTGGCCAATATGAAATCACTGCTAGTAATCATTATGGTGAATCCAATTGCACCATAAGCATCACAGTAGAGTATTCTCCAGAGTTGATCTGCGGAGAAAGCTATGAAGTGAAAGAGAAAACAGTTTTCAGTCCTTGTGATGTTGAGGGAGAACCAAAGCCAGAGTTATCCCTCTACAAAGAAGGAAAAAGGATCCAGCTTTTCAATGGTTTCAGATGGAATGACAGTGGCTTGTATCAGTTAACTGCAAGAAACAAACATGGATCTGTGAATAAAAGCCTTACTATCAACGTCCAGTATGCTCCAAGACTGTTTGCTAGCCAACAGGATTTTGTTGTGGCAAAAGACTACAGGATAATTCTACAGTGCAACTCCTCTGGTAACCCAGAACCAGAGATGTGGTGGAGCTTCAATAACAAGAACATCTCCACCGGGCGGCGCTACATCACCGTCAACATCGAGAAGGCCACGTCTACCAGTGCTGGAAATTATACATGCATTGCCAGGAATGAAATTGGACGACAGGAGAAGGTCTTCACTGTCAAGATAAAAGACAACTCTCGGAGCTACCTTCTAATTGCTGTAGTGGTTATTCCACTGCTTGTTTTATTATTGACATGCCTGTTGTTCTTGTGGAGAAGGCAAAGAGCAAGTGGACGTTATGATGTAACGACACTTAAGTCAAATGAAATGGTTCCGTTAAGCAATGGGGGCACTTAGTGAGTTTTAGCTTGATTTGAAAAGTTGTAAATATGGTTACATGAACAAAGCTGATATAATGAACATCATTTGGGTTTCaagaaataaataacttaaattaaaagACAAACTGTGGCAGATAAATTCAAGAAGAGAGGGCCATTTACCTGAATTCACCATATAAAAGATCATATTATACTCAGATAATCGGCCACTTATGTTGTTGTAAATGTcactgagaaataaaaaaaaaaaaggtgaaattaattgaaaaataaaaaaataaaagagtataacaacccagcaggcacacattgTCTTAAGATGTTtatattaagttagatttaggtcaaGACAACATtgttttgacgtccaataacgacgtcaaatgacattgacatttggttgattttaggttgtgttggacagtgaccaaaatccaacatcaagctaACATCATAAACCAACgtaatattgatgtcaaatactgacatttatttgtcaggtatggcaaccaaaatccaacgtttgaCAGACGCCATAGTGGTAActtccacacaatgtcaagctgtaacatcattagacgttgatatatggttaattttaggttgggtGTTGGACATTGATatcagcctgatgttgggttttgacgtcaaccagattttcatttccgaacaaaatgcaatgtccccacaatgTCAGGGTACTACGTCAATCTGatatcatgttgacgtcctgtgcctgctggaaaGTGCATCAAAGGCAATATTTAACTCCTCGAACTGAATGggcatttttaaaatctttataagCTAAAATTTCCCTAAATATAGTGTCTGTGTTGTCTTTTACGTTAAAGGTGCCGTAAGTGATCTGCCACAATGCTAGCCTGTTAGCATAAACCTCTGAAACAATATAGAGAGCGCGTCACAGGtcatcattgttcaaaaatgaatcaATGTGCCTATAAAatcaacttcacctcagtaaagcaggctaggcagaatagcacTGTGTActtctgttttgttgttaaactaaataaaaatcgacattattgatgctgtaaaaggaccgaatgaaactgaaaatagtcacatcaatctatcggaagattttagtggctgaacaacacttctgtgcatataacccattcataagaACTCGATCTGCTCTGCGTGacaaaaatagctttaaaacagaacattaccagTCTAACAGAAaaacttcagccatggtgtcttccttcctccagcatgcaaaagtaactacAATATCGATTCAGGATTTAAGAAAAAAGTTtggattcagcatgtttttaccgctcactttcgctctctctctctctaatgaaTGCGCAGCACGTGTATGCACAAACGGCAGAGCTGCTAACAAACAGGTACGCAGTAGCTCTTGTCTGCATTTGTttacagacagtttgggctacttatcggaattacgGGAGATGTAGGTCCGACattattttaattggatgaacattttttagttttatgcctcacccagaatataaaaatacatataaacacatttagatcatttactttaatcattaatattggaatgtgaagagacttttaaccagcacaactaaacatgtttctgaagacactcacctactgcacctttaacatttcAGTTTAACCAATTTCTCTAAACCAGCGGTCAccgaacttgttcctggagggccggtgtccttcagattttagctccaactctaattaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacacccaggcaggtgtattgaggTAATTTGGagcaaaaccctgcagggacaccggccctcctggaccgagattggtgacccctgctctaaacagtCAGAATACTAACTGCTGTGATGaaaacaaactgtttaaaatCCTGTTGTAAATATAAACTAATGACAGGGGTCAGCtgttatattgtaaaaaaataaaaatcattattgTCAATATTGCTCTTGATGTTGTAATTAAATATtgatcaaaaatgtttttgtatttaaacaAATAGTGTGATATATTCTGACTATACACATGCAAAACATGCTGGTTCTTTGTAGTGAGTCATCTTTTATGTAAATGCATCTGATTGTCTAAAGGGTTCATTTGATTGCTTATCAGAGTCATAAAAAAGAAATCTGAGGCAAAGTATACAGATCGAAATAGCCTAATAATAttaacacaaaaatgttttaaatctttaCTCATTTGAACATTGAATTTTAATTTCGGGAGAGCACATCATTTAATTTAACTGTGCAAGAGGCCTCTTGAATTTATAGAAAAATTTTGCAACAAACTCACATTCATTGACAAAATGTTGTCCTATGTGTTggctatttacatttacattttatttacatgacttttatttactgtattaaagATATGCCCACTTTTTCTTATTATACTGTCAGatttggttttaattttaattttatttttgataaataacataatattacTAAGATTTTCATGCAATTAAACTGCCAAAAGACAATGAACCACTTCCAAGACAAGACATTTGCATGCGTTCtgcaattttcatatttttcttctttttttatactTCTTGTTTCATTGATTTGACTTTCATCTGTAAATACATTTGATAACGGTTCTGTCTCAGTTATGATGCAATAAACAAGATTTATTAACAAAAGTAATACCAAA
>TCONS_00052140
ATCCTGTTCTGAGACACACAACACCATGCTtatcacatttaaaacaaaataaacccaTTTCGCCCACAACAGCAAAGGAGATTCTGCATTCCCAGCGTCACCACCAGCATTGTTGCCTATCATTGTCAGTTTTGATGCTGACAATGCCTCGGCTTCAACAGTTTATAGCCCTGCTGCTCATCACTCTTGCTTATGGCGACGACTGCCCCATTTCCTTCAACATTCCTGAGGTGGTTGAATATGGAGCTTCATTCTCAGTGAACTGCTCCACCAACGTCACTGATCATTTGGGCTTGAGTTGGGAGCCAAATAAAGAGGCTGCGGAGAAAACTGGCGAGATCTCCAAAACTCTAGTGGGAGAGTGGGAGAGCGAATTCTCTTGCTACATCTACTTCAATGAAACACAGCCGTGTTCACAGAATCTCTCAGTTACCATTTATAAGACTCCAGACAGTGTTTCTATCAGCGCCTTGAATCACATTGGACCAATGATAGAGGGAATTCAGTATGAGCTCCAGTGTGATGTTTACAATGTGGCTCCTGCTCAAAGTCTCACTGTCAACTGGTACAAAGGAAAAACTCTGGTGAATCAAACCAGCTTCACTGACACCAGCAAGAGTTCAGTCAACATGACATCTAATCTCCTGATCCAACCGGACAGAACTGATAATGAAGCTCAGTACAGGTGTGAAGCAGCGTTAAACCTGGGAGAAGAAGGACCTCAACCTCCTCCTACAGTCACATCAGAACCTCTCAGCATTACTGTTGAATatgactgcccCATTTCCTTCAACTTTTCTGAGGTGGTGGTTGAATATGGAACTTCATTCTCAGTAAACTGCTCTGCTGAAACCACCAAATATTTGGGCTTGAGTTGGGAGCTAAATGAAGAGACAGTGGAGATCACTAGTGAGATCTCCAAAACCGTGGATCAAATGACGGAGTGGGAGGGCAAATTCTCTTGCTACATCTACTTCAATAACACACAGCCGTGTTCCCGGACTGTCTCAGTTACCATTTATAAGACTCCAGATAGTGTTTCCATCAGCACTGTGAATCACACTGGACCAATGACGGTGGGAAAGCAGTATGAGCTCCAGTGTGATGTTCACAATGTGGCTCCTGCTCAGAGTCTCACTGTCAAATGGTACAAAGGAGAAACTCTGGTGAATCAAACCAGCTTCACTGACACCAGCAAGAGTCCAGTCAGTAAAACATCTAAACTCCTGATCCATCCAAACAGAAATGATGATAGAGCTCAGTACAGGTGTGAAGCGGAGCTGAATCTGGGAGAAGAAGGACCACAACCTCCTcctaaaaacaaatcaaaacctCTCAGCATTACTGTACAATCACATCATATTCTAGATGGTGGATGTCCGATTGAACTAAAGCCAAGGAGAGCTGTTGTGAAATATGGCAGTAGTGTTTCAGCTGACTGCAAATCATTTGTCCCACATGATGGGATAGGATGGGAAGCCACTGTGGGAGGAGTGCCCCTGTCCAAAGCCAGTCTGATCACATGGAGAGTGTCACAGCTGACAGACTGGGAGATACAGCCACCATTCTGCTACATAAACTACAAACAGCAGTGTGAAGTAGCTCTCCCAGTCACTATTTACAAGACTCCAGACAGTGTTTCTATCAGCGCTGTGGATCAAATAATAAAGGAGGGAAACCAGTATGAGCTCCAgtgtgacatttataatgtgGCTCCTGCTGAGAGTCTCACTGTCAACTGGTACAAAGGAGAAACTCTGGTGAATCAAACCAACTTCACAGACACTACCAAGAGTCCAGTCAACATAACATCTTATCTCCTGATCCATCCAGTCAGAGCTGATAATGGAGCTCAGTTCAGATGTGAAACAGAGCTGAACCTGGGAGAAGAAGGACCTCAACCGCCTCCTAAAAACACATCTGAACCTCTCAGCATTCCTGTACACTATGCTCCAGAAATTAAATCTTGTCAGCCCTGGTCACCAAAGAAAGGGTCTACCTTAGATTCATATCCAAAACATTTACATTCTGTTGTGGGCAACCCCCATCCAAGCATCTCCTGGAAACATAATTCATCGCCAGTCAATGCTTCTGCACCTCTTACCGAAACAGATTCTGGCCAATATGAAATCACTGCTAGTAATCATTATGGTGAATCCAATTGCACCATAAGCATCACAGTAGAGTATTCTCCAGAGTTGATCTGCGGAGAAAGCTATGAAGTGAAAGAGAAAACAGTTTTCAGTCCTTGTGATGTTGAGGGAGAACCAAAGCCAGAGTTATCCCTCTACAAAGAAGGAAAAAGGATCCAGCTTTTCAATGGTTTCAGATGGAATGACAGTGGCTTGTATCAGTTAACTGCAAGAAACAAACATGGATCTGTGAATAAAAGCCTTACTATCAACGTCCAGTATGCTCCAAGACTGTTTGCTAGCCAACAGGATTTTGTTGTGGCAAAAGACTACAGGATAATTCTACAGTGCAACTCCTCTGGTAACCCAGAACCAGAGATGTGGTGGAGCTTCAATAACAAGAACATCTCCACCGGGCGGCGCTACATCACCGTCAACATCGAGAAGGCCACGTCTACCAGTGCTGGAAATTATACATGCATTGCCAGGAATGAAATTGGACGACAGGAGAAGGTCTTCACTGTCAAGATAAAAGACAACTCTCGGAGCTACCTTCTAATTGCTGTAGTGGTTATTCCACTGCTTGTTTTATTATTGACATGCCTGTTGTTCTTGTGGAGAAGGCAAAGAGCAAGTGGACGTTATGATGTAACGACACTTAAGTCAAATGAAATGGTTCCGTTAAGCAATGGGGGCACTTAGTGAGTTTTAGCTTGATTTGAAAAGTTGTAAATATGGTTACATGAACAAAGCTGATATAATGAACATCATTTGGGTTTCaagaaataaataacttaaattaaaagACAAACTGTGGCAGATAAATTCAAGAAGAGAGGGCCATTTACCTGAATTCACCATATAAAAGATCATATTATACTCAGATAATCGGCCACTTATGTTGTTGTAAATGTcactgagaaataaaaaaaaaaaaggtgaaattaattgaaaaataaaaaaataaaagagtataacaacccagcaggcacacattgTCTTAAGATGTTtatattaagttagatttaggtcaaGACAACATtgttttgacgtccaataacgacgtcaaatgacattgacatttggttgattttaggttgtgttggacagtgaccaaaatccaacatcaagctaACATCATAAACCAACgtaatattgatgtcaaatactgacatttatttgtcaggtatggcaaccaaaatccaacgtttgaCAGACGCCATAGTGGTAActtccacacaatgtcaagctgtaacatcattagacgttgatatatggttaattttaggttgggtGTTGGACATTGATatcagcctgatgttgggttttgacgtcaaccagattttcatttccgaacaaaatgcaatgtccccacaatgTCAGGGTACTACGTCAATCTGatatcatgttgacgtcctgtgcctgctggaaaGTGCATCAAAGGCAATATTTAACTCCTCGAACTGAATGggcatttttaaaatctttataagCTAAAATTTCCCTAAATATAGTGTCTGTGTTGTCTTTTACGTTAAAGGTGCCGTAAGTGATCTGCCACAATGCTAGCCTGTTAGCATAAACCTCTGAAACAATATAGAGAGCGCGTCACAGGtcatcattgttcaaaaatgaatcaATGTGCCTATAAAatcaacttcacctcagtaaagcaggctaggcagaatagcacTGTGTActtctgttttgttgttaaactaaataaaaatcgacattattgatgctgtaaaaggaccgaatgaaactgaaaatagtcacatcaatctatcggaagattttagtggctgaacaacacttctgtgcatataacccattcataagaACTCGATCTGCTCTGCGTGacaaaaatagctttaaaacagaacattaccagTCTAACAGAAaaacttcagccatggtgtcttccttcctccagcatgcaaaagtaactacAATATCGATTCAGGATTTAAGAAAAAAGTTtggattcagcatgtttttaccgctcactttcgctctctctctctctaatgaaTGCGCAGCACGTGTATGCACAAACGGCAGAGCTGCTAACAAACAGtttgggctacttatcggaattacgGGAGATGTAGGTCCGACattattttaattggatgaacattttttagttttatgcctcacccagaatataaaaatacatataaacacatttagatcatttactttaatcattaatattggaatgtgaagagacttttaaccagcacaactaaacatgtttctgaagacactcacctactgcacctttaacatttcAGTTTAACCAATTTCTCTAAACCAGCGGTCAccgaacttgttcctggagggccggtgtccttcagattttagctccaactctaattaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacacccaggcaggtgtattgaggTAATTTGGagcaaaaccctgcagggacaccggccctcctggaccgagattggtgacccctgctctaaacagtCAGAATACTAACTGCTGTGATGaaaacaaactgtttaaaatCCTGTTGTAAATATAAACTAATGACAGGGGTCAGCtgttatattgtaaaaaaataaaaatcattattgTCAATATTGCTCTTGATGTTGTAATTAAATATtgatcaaaaatgtttttgtatttaaacaAATAGTGTGATATATTCTGACTATACACATGCAAAACATGCTGGTTCTTTGTAGTGAGTCATCTTTTATGTAAATGCATCTGATTGTCTAAAGGGTTCATTTGATTGCTTATCAGAGTCATAAAAAAGAAATCTGAGGCAAAGTATACAGATCGAAATAGCCTAATAATAttaacacaaaaatgttttaaatctttaCTCATTTGAACATTGAATTTTAATTTCGGGAGAGCACATCATTTAATTTAACTGTGCAAGAGGCCTCTTGAATTTATAGAAAAATTTTGCAACAAACTCACATTCATTGACAAAATGTTGTCCTATGTGTTggctatttacatttacattttatttacatgacttttatttactgtattaaagATATGCCCACTTTTTCTTATTATACTGTCAGatttggttttaattttaattttatttttgataaataacataatattacTAAGATTTTCATGCAATTAAACTGCCAAAAGACAATGAACCACTTCCAAGACAAGACATTTGCATGCGTTCtgcaattttcatatttttcttctttttttatactTCTTGTTTCATTGATTTGACTTTCATCTGTAAATACATTTGATAACGGTTCTGTCTCAGTTATGATGCAATAAACAAGATTTATT

Function

symbol description
si:ch73-208g10.1 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in macrophage and notochord.

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-6 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in macrophage and notochord.

Ensembl:

ensembl_id ENSDARG00000079808

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052139 False 5532 mRNA 0.39 11 54502350 54524194
TCONS_00052140 True 5476 mRNA 0.39 12 54502368 54524194

Neighbor

gene id symbol gene type direction distance location
XLOC_026806 trip10a coding downstream 1996 54431093 ~ 54500354 (-)
XLOC_026805 NA coding downstream 659566 53842532 ~ 53842784 (-)
XLOC_026803 rdh8a coding downstream 780168 53687645 ~ 53722182 (-)
XLOC_026804 BX004869.1 coding downstream 812922 53689310 ~ 53689428 (-)
XLOC_026802 NA coding downstream 913173 53573131 ~ 53589177 (-)
XLOC_026808 angptl6 coding upstream 33 54524227 ~ 54544612 (-)
XLOC_026809 dnmt1 coding upstream 67024 54591218 ~ 54607166 (-)
XLOC_026810 s1pr2 coding upstream 91821 54616015 ~ 54669185 (-)
XLOC_026811 NA coding upstream 224202 54748396 ~ 54784321 (-)
XLOC_026812 NA coding upstream 267359 54791553 ~ 54820900 (-)
XLOC_026797 NA non-coding downstream 1049568 53449116 ~ 53452782 (-)
XLOC_026796 NA non-coding downstream 1269855 53230710 ~ 53232495 (-)
XLOC_026814 NA non-coding upstream 349207 54873401 ~ 54884180 (-)
XLOC_026831 NA non-coding upstream 1314260 55838454 ~ 55839514 (-)
XLOC_026834 CU855917.1 non-coding upstream 1886947 56411141 ~ 56413023 (-)

Expression


Co-expression Network