XLOC_026813 (ubald1b)


Basic Information

Item Value
gene id XLOC_026813
gene name ubald1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 54833658 ~ 54846444 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052144
GTTTACTACGTTTGTCCAGCAGGGGCGCTCAGCAGGACCCTCCAACTCACAACAATTTTTGTTTCCAATCGACAAGTTGATGTGTTAGTGCGGCGTTTTTAAAAGACTGCAGATTAAAACCTTAACCTGACGACTTTGTATCGGTTTCTTGAGTAAATATGGACGAACTAAGACATCAAGTTATGATAAATCAGTTTGTTCTTACAGCAGGATGCGCGGCGGATCAAGCAAAGCAGTTTTTACAAGCTTCACACTGGCAGTTTGAGGCTGCCCTCAGTACATTTTTCCAAGAGGCTAATATTCCTTACAGCCATCAAATGATGTGCACTCCAGCCAACACGCCAGCAACACCTCCAAACTTTCCCGATGCCCTGGCCATGTTCTCTCGCCTAAAAGCCTCCGAAAGCTTCGGTAGCAGTAGCCCCATTACTTCAATGGCCGCATCGCCAGCTCCTCACCCCAACTGGGCCATGAGTCCTCCGCCAACCCCGGGCCTGCAGGGGCGATGGACTCCAGCTCAGTTCATGCCCCAGCCGCCCTCTCCAGCCTGGCCTTCAGCCGTGAGTCAGCAAGCCTCCGCTGAGCACATCAGTATTATGATGGAGGCCGAGAGATAGAGACTGCTTTAACTGGCCATCACACCTTACAGGAAGACGAGGACGGAGCTTCCTCTTGATGATATCAGCAGCTGTGGATGCAAAAGAGAGCAAGCGGATTGACTGTGGAACGGAGCGCATTCGCTCCATCTGTGGACATCTGGGAGTGTTTTCAAATGCTTTCTGTTGGCAATTACCAAAAACGTGGATCAGAGCGAGTAATTATGTAGCATATTCACGGATAACCTCAGACAAATAAATGTGTTACTGAATATTGTGTTTAATTTCAGCAGTTCTCATTTAATGGTGGATATTTAACCTACAGTGCATGCTTTAAAGTCTACATTCCTCAAAAGAGTTTCCACATCAATGCTATTGAAGAACCATTTTGGGATACACAAAGAATTTAGTGACCAATTCTTAAAAAAGCTACCTTAGTGTGCACATTAGTGTTGTCATGATATTGGATTTTGGTCCCAATCAGTActggaattttaaaaacatccattttccactaacatttgagcactattgagcatgttcttaaacagcgctgatttgccattgtgttcatgtgctcaacagaaatgactgtgattggccgtgaagatcATCACTGAACTcatcgctgtttactgagtgtcatcacagatacagggacattaGAGTTTTAGAGGTGCGATTCGTCAGTGGATTACTCTTATGTCGGCTtaaagacaaaccagctgatcgacgtgtTATTAAATGCTCCAGTGTTCCTGTATCAGTGGGTTAccctaaggcaggggtgtcaaactcaattcctggagggccgaagccctgcacagtttagttccaacccagctccaacacacttacctgtaggttgcaaacaagcctgaaggactcgattagtttgatcaggtgtgtttaattagggttggaactatactgtgcagagctgcggcctttttggaacggagtttgacacctgtgctctaaggAAACGGGTGAGTTtgatgaactgatgaccttcacagccaatcacagtcatttctgttgagcacatcaACACAATTggaaatcagtgctgtttaagaatgtgttaaacagcgctcaaatgttagtgggaaatggactcTATGTATTGATTTGTACCGAATTTCAGTATAgggggttgtcacgatactggaattcgataccaatttTGAAAACGTCCATTTCCTTCTAACAATAAATCGCTGTGGAGCACGTTATTAagcagcgctgatttgccattgtgttcatgtgctcaacagaaatgactgtgattggccgtgaaggtcaccAGTTtactgaactcaccgctgtttactgagtgtaatcaCAGAGTCAAGGACACTTAGCTGTATGATAGCTAAGAGATAGATAGGGTTTGATAGCTGCGATTCATCAGTGGATTACTCTTATGTCAGTTTATAggcaaaccagctgatcgatgtgactttaaaacactcaaatgtccctgtatctgtggttaaacTGAGTAAATGGGTGAGTTTGATGAACTGATGATCtacacggccaatcacagtcatttctgttgagcacatcaACACAATTGCAAATCAGCGCTGATTAAGAACgagctcaacagcgctcaaatgttggTGGGAAATGTACTGAATGTATTGATTTGTTCCGGATTTCAGTAtggggttgtcacgatactggaattcgataccagtCGGTACGGAAGtcttaaaaatgtccatttcctacAACCATTTAAGCGCTGTTGAGGACATTATTAggcagcgctgatttgccattgtgttcaagtgctctgtgattggccgtgaaggtcaccAGTTCACCGATCTCAcctctgtttactgagtgtaatcgcagatacagggacacttgTGGGTTTGATAGCTGTGATTCATCAGTGGATTACtcttatgtcagcttatagacaaaccagctgatcgacgtgactttaaaacactccaatgtccctgtatctgtggttaaacTGAGTAAATGGGTGAGTTtgatgaactgatgaccttcacggccaatcacagtcatttctgttgagcacatcaACACAATTGCAAATCAGCGCTGATTAAGAACgagctcaacagcgctcaaatgttagtgggaaatgtaCTGGATATATTGATTTGTACCGGATTTCAGTAtggggttgtcacgatactggaattcgataccagtCGTTACTGAAGtcttaaaaatgtccatttcctgcGACCATTTAAGTGCTGTTGAGGACATTATTAAGCAGTGCTAATTTGCCATTGTGTTAACGtcttcaacagaaatgactgggattggccatgaaggtcaccagttcaccgaactcaccgctgtttactgagtgtaatcaCAGAtatagggacactggagcattacAAAGACATGTTGGttagctggtttgtctataagctgacatacgggCGATCTGCTGATGAATCTCCCCTTTAAAACGCTTCAAATGgaagtttttaaaacttcagtactaATTAATAtggaattccagtatcgtgacaaacCGAGTGCAGACTCttttaataatctaaagaacAGTTTTGTACTACAAAGAGCATTTCGTTTTTTCTTAGAACCATTGATACTCACCGTCAAGCCGTTTCAAACTGGGATTATTTCATTTCTTTTGATTCCATTGACTGCTTAATGACCTAAATTAATATTCTTCTTATATATTTCAGGGAAGAGTGCACGTTTTATGGGTTTAGAGAGACATGAGAGTGAGCAAATGATTACAGCAAGTTCCTATTTGTGTGATCTGCCCTTtaactgacatgtttactgtagaAACTCAAGACTCTAGAATTATTGACTTCCTCACAACTCTGTGATAAACTACTATGGCATTTTGTGCAAAGAGAATGCTATAGGAAGCATTTCATACCCAGAACGTTCTGCTCAGCACTTACAGCACATTTGTCTGTTTTatcatgaatcttttttttttttccttttttttaattaatatatataaagcAGAAATATTTTCCTCCTGTGTCATCTCCCTGTAATGGTGTTCACACTGCCTCCACAATATTTGTGGGCTATATGTGATGGTTATCACTTCCTGTTTGTTGtttttgaataaatattgtatatattgcAAAACGCCTGCTCGTGCTGCTTATGTCTATGCTAACTAACCAACTAGTGTTTAGCTTGAAGTGTAGTCTGGCCCACTGTGTGTATACCTGAACTTTGTATTGTGTTATACCATAGTAAATGATTAGACAGAGACCCAGAGGTGAGTTTAATTTAGCAAAAGGCTAATAAGTGTCATTAATTGACCATAACTGCAGTCATTTATagttcatgttttatttattattaatgaattgtttttaGGATTGCATAACATTGTTATATGTAAAGTGTGTGTGCACTTTAATGTTCCCCGGTTTAAAACAGAATATGTAATAGCAAACAAAATGTCAAAGAAAATCACACATATGGAAAACTTTCAGGAATAAGTGGTTTAGAGATAtaggaaaagaaaaacatattatcTAAAAATTCTTGAAAAATTCATCAGTCATTTTTGGGGGgagtctcctcatccaccatggGCAGCATCGACCAGGATGATGTGATAGCAGCCATAGACTGCACACCAGACcacaataatatccagctgcaggcctgcAGAAcaacacacgttttaggcacacacaatctaggcaagcCATATATGGTCAcgacggatgttaatgttattaacgtctttttgaacatcttcatcgatatattttgatatatatgataaataaatattgtacacaataaacaatagtgtttactttattttacaaatattgcgATTGAGACGGCTGAATAGGGAgcattgtttccgatcgccattcaatataatagactgacCAAGTTTTTAATtagtcattatagctgatcagtcattattatc

Function

symbol description
ubald1b Orthologous to human UBALD1 (UBA like domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-446 Orthologous to human UBALD1 (UBA like domain containing 1).

Ensembl:

ensembl_id ENSDARG00000020976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052144 True 4551 mRNA 0.41 3 54833658 54846444

Neighbor

gene id symbol gene type direction distance location
XLOC_026812 NA coding downstream 12758 54791553 ~ 54820900 (-)
XLOC_026811 NA coding downstream 49337 54748396 ~ 54784321 (-)
XLOC_026810 s1pr2 coding downstream 164473 54616015 ~ 54669185 (-)
XLOC_026809 dnmt1 coding downstream 226492 54591218 ~ 54607166 (-)
XLOC_026808 angptl6 coding downstream 289046 54524227 ~ 54544612 (-)
XLOC_026814 NA coding upstream 26957 54873401 ~ 54884180 (-)
XLOC_026815 rhbdf1a coding upstream 49887 54896331 ~ 54993027 (-)
XLOC_026816 nprl3 coding upstream 198902 55045346 ~ 55079742 (-)
XLOC_026817 hbba2 coding upstream 244786 55091230 ~ 55092051 (-)
XLOC_026818 hbba1 coding upstream 252013 55098457 ~ 55099272 (-)
XLOC_026805 NA non-coding downstream 990874 53842532 ~ 53842784 (-)
XLOC_026804 BX004869.1 non-coding downstream 1144230 53689310 ~ 53689428 (-)
XLOC_026802 NA non-coding downstream 1244481 53573131 ~ 53589177 (-)
XLOC_026831 NA non-coding upstream 992010 55838454 ~ 55839514 (-)
XLOC_026834 CU855917.1 non-coding upstream 1564697 56411141 ~ 56413023 (-)
XLOC_026840 NA non-coding upstream 2190650 57037094 ~ 57037670 (-)
XLOC_026851 CT583687.2 non-coding upstream 3211170 58057614 ~ 58059819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00473025_00476254 NA coding CI01000113 null 472132 ~ 478063 (-)